data_5NEI # _model_server_result.job_id QDuWpeiDBDD4KaoSF2tQGQ _model_server_result.datetime_utc '2024-12-18 01:55:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nei # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 5NEI # _exptl.entry_id 5NEI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 549.335 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[[3-[[5-(3-iodanylphenyl)carbonylthiophen-2-yl]carbonylamino]phenyl]methyl]propanedioic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.71 _cell.angle_gamma 90 _cell.entry_id 5NEI _cell.length_a 33.35 _cell.length_b 91.36 _cell.length_c 35.94 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NEI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H16 I N O6 S' _chem_comp.formula_weight 549.335 _chem_comp.id 8VB _chem_comp.mon_nstd_flag . _chem_comp.name '2-[[3-[[5-(3-iodanylphenyl)carbonylthiophen-2-yl]carbonylamino]phenyl]methyl]propanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms JES107;polotyrin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAH CAK 8VB doub 1 n y CAH CAL 8VB sing 2 n y CAK CAZ 8VB sing 3 n y CAL CBA 8VB doub 4 n y OAC CAW 8VB doub 5 n n CAZ CAR 8VB sing 6 n n CAZ CAP 8VB doub 7 n y CBA CAP 8VB sing 8 n y CBA NAS 8VB sing 9 n n CAR CBE 8VB sing 10 n n CAW NAS 8VB sing 11 n n CAW CBC 8VB sing 12 n n OAF CAV 8VB doub 13 n n CBE CAV 8VB sing 14 n n CBE CAU 8VB sing 15 n n CAV OAB 8VB sing 16 n n CAN CBC 8VB doub 17 n y CAN CAO 8VB sing 18 n y CBC SAT 8VB sing 19 n y OAA CAU 8VB doub 20 n n CAU OAE 8VB sing 21 n n CAO CBD 8VB doub 22 n y SAT CBD 8VB sing 23 n y CBD CAX 8VB sing 24 n n CAX OAD 8VB doub 25 n n CAX CBB 8VB sing 26 n n CBB CAQ 8VB doub 27 n y CBB CAM 8VB sing 28 n y CAQ CAY 8VB sing 29 n y IAG CAY 8VB sing 30 n n CAM CAI 8VB doub 31 n y CAY CAJ 8VB doub 32 n y CAI CAJ 8VB sing 33 n y OAE H1 8VB sing 34 n n CBE H2 8VB sing 35 n n OAB H3 8VB sing 36 n n CAR H4 8VB sing 37 n n CAR H5 8VB sing 38 n n CAP H6 8VB sing 39 n n CAK H7 8VB sing 40 n n CAH H8 8VB sing 41 n n CAL H9 8VB sing 42 n n NAS H10 8VB sing 43 n n CAN H12 8VB sing 44 n n CAO H14 8VB sing 45 n n CAQ H15 8VB sing 46 n n CAJ H16 8VB sing 47 n n CAI H17 8VB sing 48 n n CAM H18 8VB sing 49 n n # _atom_sites.entry_id 5NEI _atom_sites.fract_transf_matrix[1][1] 0.029985 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005131 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010946 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028229 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8VB A 1 701 1 8VB DRG . C 3 HOH A 1 801 11 HOH HOH . C 3 HOH A 2 802 1 HOH HOH . C 3 HOH A 3 803 9 HOH HOH . C 3 HOH A 4 804 2 HOH HOH . C 3 HOH A 5 805 10 HOH HOH . C 3 HOH A 6 806 3 HOH HOH . C 3 HOH A 7 807 8 HOH HOH . C 3 HOH A 8 808 6 HOH HOH . C 3 HOH A 9 809 7 HOH HOH . C 3 HOH A 10 810 4 HOH HOH . C 3 HOH A 11 811 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA 8VB . . . B 2 12.896 20.065 3.041 1 82.24 ? OAA 8VB 701 A 1 HETATM 2 C CAU 8VB . . . B 2 13.77 20.964 3.125 1 84.64 ? CAU 8VB 701 A 1 HETATM 3 O OAE 8VB . . . B 2 14.013 21.655 4.148 1 80.09 ? OAE 8VB 701 A 1 HETATM 4 C CBE 8VB . . . B 2 14.623 21.324 1.861 1 84.64 ? CBE 8VB 701 A 1 HETATM 5 C CAV 8VB . . . B 2 16.093 21.033 2.138 1 78.21 ? CAV 8VB 701 A 1 HETATM 6 O OAF 8VB . . . B 2 16.521 19.9 1.81 1 77.66 ? OAF 8VB 701 A 1 HETATM 7 O OAB 8VB . . . B 2 16.738 21.94 2.7 1 74.85 ? OAB 8VB 701 A 1 HETATM 8 C CAR 8VB . . . B 2 14.374 22.774 1.254 1 82.09 ? CAR 8VB 701 A 1 HETATM 9 C CAZ 8VB . . . B 2 13.086 22.762 0.756 1 86.34 ? CAZ 8VB 701 A 1 HETATM 10 C CAP 8VB . . . B 2 11.994 22.673 1.593 1 85.7 ? CAP 8VB 701 A 1 HETATM 11 C CAK 8VB . . . B 2 12.848 22.87 -0.618 1 87.36 ? CAK 8VB 701 A 1 HETATM 12 C CAH 8VB . . . B 2 11.541 22.785 -1.076 1 88.78 ? CAH 8VB 701 A 1 HETATM 13 C CAL 8VB . . . B 2 10.513 22.583 -0.182 1 88.17 ? CAL 8VB 701 A 1 HETATM 14 C CBA 8VB . . . B 2 10.772 22.32 1.175 1 86.03 ? CBA 8VB 701 A 1 HETATM 15 N NAS 8VB . . . B 2 9.813 22.225 2.092 1 83.61 ? NAS 8VB 701 A 1 HETATM 16 C CAW 8VB . . . B 2 8.615 21.863 1.673 1 86.56 ? CAW 8VB 701 A 1 HETATM 17 O OAC 8VB . . . B 2 8.389 21.131 0.704 1 90.28 ? OAC 8VB 701 A 1 HETATM 18 C CBC 8VB . . . B 2 7.745 21.803 2.66 1 81.78 ? CBC 8VB 701 A 1 HETATM 19 S SAT 8VB . . . B 2 7.618 22.798 3.924 1 84.8 ? SAT 8VB 701 A 1 HETATM 20 C CAN 8VB . . . B 2 6.651 21.115 2.566 1 74.25 ? CAN 8VB 701 A 1 HETATM 21 C CAO 8VB . . . B 2 5.943 21.249 3.674 1 72.41 ? CAO 8VB 701 A 1 HETATM 22 C CBD 8VB . . . B 2 6.436 22.054 4.618 1 74.14 ? CBD 8VB 701 A 1 HETATM 23 C CAX 8VB . . . B 2 5.607 22.354 5.599 1 70.04 ? CAX 8VB 701 A 1 HETATM 24 O OAD 8VB . . . B 2 5.297 23.515 5.866 1 63.3 ? OAD 8VB 701 A 1 HETATM 25 C CBB 8VB . . . B 2 5.092 21.265 6.296 1 64.33 ? CBB 8VB 701 A 1 HETATM 26 C CAQ 8VB . . . B 2 5.942 20.181 6.46 1 63.67 ? CAQ 8VB 701 A 1 HETATM 27 C CAY 8VB . . . B 2 5.668 19.075 7.226 1 60.74 ? CAY 8VB 701 A 1 HETATM 28 I IAG 8VB . . . B 2 7.18 17.595 7.057 1 67.86 ? IAG 8VB 701 A 1 HETATM 29 C CAJ 8VB . . . B 2 4.478 19.068 7.984 1 59.36 ? CAJ 8VB 701 A 1 HETATM 30 C CAI 8VB . . . B 2 3.659 20.205 7.908 1 59.97 ? CAI 8VB 701 A 1 HETATM 31 C CAM 8VB . . . B 2 4.015 21.323 7.147 1 63.47 ? CAM 8VB 701 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #