data_5NEK
#
_model_server_result.job_id            1vACCyw48ae3Kf6BjahNOg 
_model_server_result.datetime_utc      '2024-11-25 04:43:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nek 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":302}' 
#
_entry.id    5NEK 
#
_exptl.entry_id    5NEK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              59.044 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ACETATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.09 
_cell.angle_gamma         90 
_cell.entry_id            5NEK 
_cell.length_a            49.388 
_cell.length_b            118.211 
_cell.length_c            98.265 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NEK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 D NE2 HIS 204 D HIS 230 1_555 L O2 AZM . D AZM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? 
metalc ? metalc1 A OD1 ASP 51 A ASP 77 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc2 A NE2 HIS 100 A HIS 126 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc3 A NE2 HIS 104 A HIS 130 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc4 E ZN ZN . A ZN 301 1_555 F O ACT . A ACT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? 
metalc ? metalc5 E ZN ZN . A ZN 301 1_555 F OXT ACT . A ACT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? 
metalc ? metalc6 B OD1 ASP 51 B ASP 77 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc7 B NE2 HIS 100 B HIS 126 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc8 B NE2 HIS 104 B HIS 130 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? 
metalc ? metalc9 G ZN ZN . B ZN 301 1_555 H O1 AZM . B AZM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? 
metalc ? metalc10 G ZN ZN . B ZN 301 1_555 H S1 AZM . B AZM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc11 C OD1 ASP 51 C ASP 77 1_555 I ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? 
metalc ? metalc12 C NE2 HIS 100 C HIS 126 1_555 I ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc13 C NE2 HIS 104 C HIS 130 1_555 I ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? 
metalc ? metalc14 I ZN ZN . C ZN 301 1_555 J O ACT . C ACT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc15 I ZN ZN . C ZN 301 1_555 J OXT ACT . C ACT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
metalc ? metalc16 D OD1 ASP 51 D ASP 77 1_555 K ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc17 D OD2 ASP 51 D ASP 77 1_555 K ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc18 D NE2 HIS 100 D HIS 126 1_555 K ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc19 D NE2 HIS 104 D HIS 130 1_555 K ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc20 K ZN ZN . D ZN 301 1_555 L N1 AZM . D AZM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? 
metalc ? metalc21 K ZN ZN . D ZN 301 1_555 L S1 AZM . D AZM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc22 K ZN ZN . D ZN 301 1_555 L O1 AZM . D AZM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
#
_chem_comp.formula           'C2 H3 O2 -1' 
_chem_comp.formula_weight    59.044 
_chem_comp.id                ACT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ACETATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O ACT doub 1 n n 
C OXT ACT sing 2 n n 
C CH3 ACT sing 3 n n 
CH3 H1 ACT sing 4 n n 
CH3 H2 ACT sing 5 n n 
CH3 H3 ACT sing 6 n n 
#
_atom_sites.entry_id                     5NEK 
_atom_sites.fract_transf_matrix[1][1]    0.020248 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004337 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008459 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010407 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 301 280 ZN ZN . 
F 3 ACT A 1 302 300 ACT ACT . 
G 2 ZN B 1 301 280 ZN ZN . 
H 4 AZM B 1 302 300 AZM AZM . 
I 2 ZN C 1 301 280 ZN ZN . 
J 3 ACT C 1 302 300 ACT ACT . 
K 2 ZN D 1 301 280 ZN ZN . 
L 4 AZM D 1 302 300 AZM AZM . 
M 5 PGE D 1 303 1 PGE PGE . 
N 6 HOH A 1 401 11 HOH HOH . 
N 6 HOH A 2 402 17 HOH HOH . 
N 6 HOH A 3 403 20 HOH HOH . 
N 6 HOH A 4 404 12 HOH HOH . 
N 6 HOH A 5 405 25 HOH HOH . 
O 6 HOH B 1 401 21 HOH HOH . 
O 6 HOH B 2 402 18 HOH HOH . 
O 6 HOH B 3 403 4 HOH HOH . 
O 6 HOH B 4 404 13 HOH HOH . 
O 6 HOH B 5 405 3 HOH HOH . 
O 6 HOH B 6 406 14 HOH HOH . 
O 6 HOH B 7 407 26 HOH HOH . 
O 6 HOH B 8 408 2 HOH HOH . 
O 6 HOH B 9 409 8 HOH HOH . 
P 6 HOH C 1 401 10 HOH HOH . 
P 6 HOH C 2 402 24 HOH HOH . 
P 6 HOH C 3 403 23 HOH HOH . 
P 6 HOH C 4 404 6 HOH HOH . 
P 6 HOH C 5 405 9 HOH HOH . 
Q 6 HOH D 1 401 22 HOH HOH . 
Q 6 HOH D 2 402 15 HOH HOH . 
Q 6 HOH D 3 403 1 HOH HOH . 
Q 6 HOH D 4 404 5 HOH HOH . 
Q 6 HOH D 5 405 7 HOH HOH . 
Q 6 HOH D 6 406 19 HOH HOH . 
Q 6 HOH D 7 407 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C ACT . . . J 3 28.505 33.852 139.405 1 87.66 ? C ACT 302 C 1 
HETATM 2 O O ACT . . . J 3 29.114 34.897 139.749 1 83.74 ? O ACT 302 C 1 
HETATM 3 O OXT ACT . . . J 3 27.348 33.71 139.872 1 85.06 ? OXT ACT 302 C 1 
HETATM 4 C CH3 ACT . . . J 3 29.123 32.836 138.485 1 84.58 ? CH3 ACT 302 C 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#