data_5NEL
#
_model_server_result.job_id            tCY_li061vKC1Bt_1undWQ 
_model_server_result.datetime_utc      '2024-11-25 02:28:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nel 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":302}' 
#
_entry.id    5NEL 
#
_exptl.entry_id    5NEL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              248.299 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3AR,5R,6S,7R,7AR)-2-(ETHYLAMINO)-5-(HYDROXYMETHYL)-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D][1,3]THIAZOLE-6,7-DIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.1 
_cell.angle_gamma         90 
_cell.entry_id            5NEL 
_cell.length_a            49.437 
_cell.length_b            117.975 
_cell.length_c            98.199 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NEL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 51 A ASP 77 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc2 A NE2 HIS 100 A HIS 126 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc3 A NE2 HIS 104 A HIS 130 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc4 E ZN ZN . A ZN 301 1_555 F O ACT . A ACT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc5 E ZN ZN . A ZN 301 1_555 F OXT ACT . A ACT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc6 E ZN ZN . A ZN 301 1_555 P O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc7 B OD1 ASP 51 B ASP 77 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc8 B NE2 HIS 100 B HIS 126 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc9 B NE2 HIS 104 B HIS 130 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc10 G ZN ZN . B ZN 301 1_555 H O4 NHT . B NHT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc11 G ZN ZN . B ZN 301 1_555 H O6 NHT . B NHT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc12 C OD1 ASP 51 C ASP 77 1_555 K ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc13 C NE2 HIS 100 C HIS 126 1_555 K ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc14 C NE2 HIS 104 C HIS 130 1_555 K ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc15 K ZN ZN . C ZN 301 1_555 L O ACT . C ACT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? 
metalc ? metalc16 K ZN ZN . C ZN 301 1_555 L OXT ACT . C ACT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc17 K ZN ZN . C ZN 301 1_555 R O HOH . C HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc18 D OD1 ASP 51 D ASP 77 1_555 M ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc19 D NE2 HIS 100 D HIS 126 1_555 M ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc20 D NE2 HIS 104 D HIS 130 1_555 M ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc21 M ZN ZN . D ZN 301 1_555 N O6 NHT . D NHT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc22 M ZN ZN . D ZN 301 1_555 N O4 NHT . D NHT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
#
_chem_comp.formula           'C9 H16 N2 O4 S' 
_chem_comp.formula_weight    248.299 
_chem_comp.id                NHT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3AR,5R,6S,7R,7AR)-2-(ETHYLAMINO)-5-(HYDROXYMETHYL)-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D][1,3]THIAZOLE-6,7-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O6 C6 NHT sing 259 n n 
C6 C5 NHT sing 260 n n 
C5 O5 NHT sing 261 n n 
C5 C4 NHT sing 262 n n 
O5 C1 NHT sing 263 n n 
C4 O4 NHT sing 264 n n 
C4 C3 NHT sing 265 n n 
C3 O3 NHT sing 266 n n 
C3 C2 NHT sing 267 n n 
C2 N2 NHT sing 268 n n 
C2 C1 NHT sing 269 n n 
N2 C7 NHT doub 270 n n 
C1 S1 NHT sing 271 n n 
S1 C7 NHT sing 272 n n 
C7 N1 NHT sing 273 n n 
N1 C9 NHT sing 274 n n 
C9 C10 NHT sing 275 n n 
O6 H6 NHT sing 276 n n 
C6 H6C1 NHT sing 277 n n 
C6 H6C2 NHT sing 278 n n 
C5 H5 NHT sing 279 n n 
C4 H4 NHT sing 280 n n 
C1 H1 NHT sing 281 n n 
O4 HA NHT sing 282 n n 
C3 H3 NHT sing 283 n n 
O3 HB NHT sing 284 n n 
C2 H2 NHT sing 285 n n 
C9 H9C1 NHT sing 286 n n 
C9 H9C2 NHT sing 287 n n 
C10 H8 NHT sing 288 n n 
C10 H11 NHT sing 289 n n 
C10 H12 NHT sing 290 n n 
N1 H13 NHT sing 291 n n 
#
_atom_sites.entry_id                     5NEL 
_atom_sites.fract_transf_matrix[1][1]    0.020228 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004336 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008476 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010415 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 301 280 ZN ZN . 
F 3 ACT A 1 302 300 ACT ACT . 
G 2 ZN B 1 301 280 ZN ZN . 
H 4 NHT B 1 302 300 NHT LIG . 
I 5 PGE B 1 303 1 PGE PGE . 
J 6 EDO B 1 304 1 EDO EDO . 
K 2 ZN C 1 301 280 ZN ZN . 
L 3 ACT C 1 302 300 ACT ACT . 
M 2 ZN D 1 301 280 ZN ZN . 
N 4 NHT D 1 302 300 NHT LIG . 
O 7 CIT D 1 303 1 CIT CIT . 
P 8 HOH A 1 401 50 HOH HOH . 
P 8 HOH A 2 402 59 HOH HOH . 
P 8 HOH A 3 403 35 HOH HOH . 
P 8 HOH A 4 404 45 HOH HOH . 
P 8 HOH A 5 405 36 HOH HOH . 
P 8 HOH A 6 406 22 HOH HOH . 
P 8 HOH A 7 407 11 HOH HOH . 
P 8 HOH A 8 408 10 HOH HOH . 
P 8 HOH A 9 409 17 HOH HOH . 
P 8 HOH A 10 410 56 HOH HOH . 
P 8 HOH A 11 411 44 HOH HOH . 
P 8 HOH A 12 412 4 HOH HOH . 
P 8 HOH A 13 413 53 HOH HOH . 
P 8 HOH A 14 414 42 HOH HOH . 
P 8 HOH A 15 415 24 HOH HOH . 
Q 8 HOH B 1 401 12 HOH HOH . 
Q 8 HOH B 2 402 9 HOH HOH . 
Q 8 HOH B 3 403 1 HOH HOH . 
Q 8 HOH B 4 404 26 HOH HOH . 
Q 8 HOH B 5 405 21 HOH HOH . 
Q 8 HOH B 6 406 32 HOH HOH . 
Q 8 HOH B 7 407 15 HOH HOH . 
Q 8 HOH B 8 408 57 HOH HOH . 
Q 8 HOH B 9 409 25 HOH HOH . 
Q 8 HOH B 10 410 28 HOH HOH . 
Q 8 HOH B 11 411 5 HOH HOH . 
Q 8 HOH B 12 412 55 HOH HOH . 
Q 8 HOH B 13 413 2 HOH HOH . 
Q 8 HOH B 14 414 38 HOH HOH . 
Q 8 HOH B 15 415 23 HOH HOH . 
Q 8 HOH B 16 416 27 HOH HOH . 
Q 8 HOH B 17 417 52 HOH HOH . 
Q 8 HOH B 18 418 49 HOH HOH . 
Q 8 HOH B 19 419 37 HOH HOH . 
R 8 HOH C 1 401 20 HOH HOH . 
R 8 HOH C 2 402 14 HOH HOH . 
R 8 HOH C 3 403 58 HOH HOH . 
R 8 HOH C 4 404 40 HOH HOH . 
R 8 HOH C 5 405 3 HOH HOH . 
R 8 HOH C 6 406 29 HOH HOH . 
R 8 HOH C 7 407 33 HOH HOH . 
R 8 HOH C 8 408 47 HOH HOH . 
R 8 HOH C 9 409 31 HOH HOH . 
R 8 HOH C 10 410 39 HOH HOH . 
R 8 HOH C 11 411 16 HOH HOH . 
R 8 HOH C 12 412 43 HOH HOH . 
R 8 HOH C 13 413 19 HOH HOH . 
R 8 HOH C 14 414 34 HOH HOH . 
S 8 HOH D 1 401 48 HOH HOH . 
S 8 HOH D 2 402 13 HOH HOH . 
S 8 HOH D 3 403 7 HOH HOH . 
S 8 HOH D 4 404 46 HOH HOH . 
S 8 HOH D 5 405 6 HOH HOH . 
S 8 HOH D 6 406 18 HOH HOH . 
S 8 HOH D 7 407 8 HOH HOH . 
S 8 HOH D 8 408 51 HOH HOH . 
S 8 HOH D 9 409 30 HOH HOH . 
S 8 HOH D 10 410 54 HOH HOH . 
S 8 HOH D 11 411 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NHT . . . N 4 15.21 22.694 107.575 0.85 74.68 ? C1 NHT 302 D 1 
HETATM 2 C C2 NHT . . . N 4 14.958 23.302 108.992 0.85 90.75 ? C2 NHT 302 D 1 
HETATM 3 C C3 NHT . . . N 4 13.991 24.478 109.012 0.85 82.91 ? C3 NHT 302 D 1 
HETATM 4 C C4 NHT . . . N 4 14.17 25.366 107.856 0.85 83.73 ? C4 NHT 302 D 1 
HETATM 5 C C5 NHT . . . N 4 13.846 24.519 106.606 0.85 64.22 ? C5 NHT 302 D 1 
HETATM 6 C C6 NHT . . . N 4 13.551 25.353 105.362 0.85 43.46 ? C6 NHT 302 D 1 
HETATM 7 C C7 NHT . . . N 4 13.615 21.14 108.958 0.85 97.77 ? C7 NHT 302 D 1 
HETATM 8 C C10 NHT . . . N 4 11.487 17.98 109.145 0.85 75.15 ? C10 NHT 302 D 1 
HETATM 9 N N2 NHT . . . N 4 13.969 22.337 109.802 0.85 102.12 ? N2 NHT 302 D 1 
HETATM 10 O O3 NHT . . . N 4 14.165 25.178 110.239 0.85 76.1 ? O3 NHT 302 D 1 
HETATM 11 O O4 NHT . . . N 4 13.412 26.53 107.938 0.85 90.65 ? O4 NHT 302 D 1 
HETATM 12 O O5 NHT . . . N 4 15.036 23.636 106.427 0.85 66.99 ? O5 NHT 302 D 1 
HETATM 13 N N1 NHT . . . N 4 12.755 20.087 109.341 0.85 93.38 ? N1 NHT 302 D 1 
HETATM 14 O O6 NHT . . . N 4 14.154 26.682 105.507 0.85 47.12 ? O6 NHT 302 D 1 
HETATM 15 S S1 NHT . . . N 4 14.406 21.289 107.537 0.85 165.31 ? S1 NHT 302 D 1 
HETATM 16 C C9 NHT . . . N 4 12.468 18.969 108.479 0.85 86.03 ? C9 NHT 302 D 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           16 
#