data_5NEL # _model_server_result.job_id wObqkLu7GHCeXeBYmApXbQ _model_server_result.datetime_utc '2024-11-25 03:07:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nel # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":304}' # _entry.id 5NEL # _exptl.entry_id 5NEL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.1 _cell.angle_gamma 90 _cell.entry_id 5NEL _cell.length_a 49.437 _cell.length_b 117.975 _cell.length_c 98.199 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NEL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 51 A ASP 77 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc2 A NE2 HIS 100 A HIS 126 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc3 A NE2 HIS 104 A HIS 130 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc4 E ZN ZN . A ZN 301 1_555 F O ACT . A ACT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc5 E ZN ZN . A ZN 301 1_555 F OXT ACT . A ACT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc6 E ZN ZN . A ZN 301 1_555 P O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc7 B OD1 ASP 51 B ASP 77 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc8 B NE2 HIS 100 B HIS 126 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc9 B NE2 HIS 104 B HIS 130 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc10 G ZN ZN . B ZN 301 1_555 H O4 NHT . B NHT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc11 G ZN ZN . B ZN 301 1_555 H O6 NHT . B NHT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc12 C OD1 ASP 51 C ASP 77 1_555 K ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc13 C NE2 HIS 100 C HIS 126 1_555 K ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc14 C NE2 HIS 104 C HIS 130 1_555 K ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc15 K ZN ZN . C ZN 301 1_555 L O ACT . C ACT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc16 K ZN ZN . C ZN 301 1_555 L OXT ACT . C ACT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc17 K ZN ZN . C ZN 301 1_555 R O HOH . C HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc18 D OD1 ASP 51 D ASP 77 1_555 M ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc19 D NE2 HIS 100 D HIS 126 1_555 M ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc20 D NE2 HIS 104 D HIS 130 1_555 M ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc21 M ZN ZN . D ZN 301 1_555 N O6 NHT . D NHT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc22 M ZN ZN . D ZN 301 1_555 N O4 NHT . D NHT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 96 n n C1 C2 EDO sing 97 n n C1 H11 EDO sing 98 n n C1 H12 EDO sing 99 n n O1 HO1 EDO sing 100 n n C2 O2 EDO sing 101 n n C2 H21 EDO sing 102 n n C2 H22 EDO sing 103 n n O2 HO2 EDO sing 104 n n # _atom_sites.entry_id 5NEL _atom_sites.fract_transf_matrix[1][1] 0.020228 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004336 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008476 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010415 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 301 280 ZN ZN . F 3 ACT A 1 302 300 ACT ACT . G 2 ZN B 1 301 280 ZN ZN . H 4 NHT B 1 302 300 NHT LIG . I 5 PGE B 1 303 1 PGE PGE . J 6 EDO B 1 304 1 EDO EDO . K 2 ZN C 1 301 280 ZN ZN . L 3 ACT C 1 302 300 ACT ACT . M 2 ZN D 1 301 280 ZN ZN . N 4 NHT D 1 302 300 NHT LIG . O 7 CIT D 1 303 1 CIT CIT . P 8 HOH A 1 401 50 HOH HOH . P 8 HOH A 2 402 59 HOH HOH . P 8 HOH A 3 403 35 HOH HOH . P 8 HOH A 4 404 45 HOH HOH . P 8 HOH A 5 405 36 HOH HOH . P 8 HOH A 6 406 22 HOH HOH . P 8 HOH A 7 407 11 HOH HOH . P 8 HOH A 8 408 10 HOH HOH . P 8 HOH A 9 409 17 HOH HOH . P 8 HOH A 10 410 56 HOH HOH . P 8 HOH A 11 411 44 HOH HOH . P 8 HOH A 12 412 4 HOH HOH . P 8 HOH A 13 413 53 HOH HOH . P 8 HOH A 14 414 42 HOH HOH . P 8 HOH A 15 415 24 HOH HOH . Q 8 HOH B 1 401 12 HOH HOH . Q 8 HOH B 2 402 9 HOH HOH . Q 8 HOH B 3 403 1 HOH HOH . Q 8 HOH B 4 404 26 HOH HOH . Q 8 HOH B 5 405 21 HOH HOH . Q 8 HOH B 6 406 32 HOH HOH . Q 8 HOH B 7 407 15 HOH HOH . Q 8 HOH B 8 408 57 HOH HOH . Q 8 HOH B 9 409 25 HOH HOH . Q 8 HOH B 10 410 28 HOH HOH . Q 8 HOH B 11 411 5 HOH HOH . Q 8 HOH B 12 412 55 HOH HOH . Q 8 HOH B 13 413 2 HOH HOH . Q 8 HOH B 14 414 38 HOH HOH . Q 8 HOH B 15 415 23 HOH HOH . Q 8 HOH B 16 416 27 HOH HOH . Q 8 HOH B 17 417 52 HOH HOH . Q 8 HOH B 18 418 49 HOH HOH . Q 8 HOH B 19 419 37 HOH HOH . R 8 HOH C 1 401 20 HOH HOH . R 8 HOH C 2 402 14 HOH HOH . R 8 HOH C 3 403 58 HOH HOH . R 8 HOH C 4 404 40 HOH HOH . R 8 HOH C 5 405 3 HOH HOH . R 8 HOH C 6 406 29 HOH HOH . R 8 HOH C 7 407 33 HOH HOH . R 8 HOH C 8 408 47 HOH HOH . R 8 HOH C 9 409 31 HOH HOH . R 8 HOH C 10 410 39 HOH HOH . R 8 HOH C 11 411 16 HOH HOH . R 8 HOH C 12 412 43 HOH HOH . R 8 HOH C 13 413 19 HOH HOH . R 8 HOH C 14 414 34 HOH HOH . S 8 HOH D 1 401 48 HOH HOH . S 8 HOH D 2 402 13 HOH HOH . S 8 HOH D 3 403 7 HOH HOH . S 8 HOH D 4 404 46 HOH HOH . S 8 HOH D 5 405 6 HOH HOH . S 8 HOH D 6 406 18 HOH HOH . S 8 HOH D 7 407 8 HOH HOH . S 8 HOH D 8 408 51 HOH HOH . S 8 HOH D 9 409 30 HOH HOH . S 8 HOH D 10 410 54 HOH HOH . S 8 HOH D 11 411 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 6 29.799 24.871 129.904 1 59.06 ? C1 EDO 304 B 1 HETATM 2 O O1 EDO . . . J 6 28.802 25.59 130.636 1 56.93 ? O1 EDO 304 B 1 HETATM 3 C C2 EDO . . . J 6 30.167 25.634 128.633 1 62.52 ? C2 EDO 304 B 1 HETATM 4 O O2 EDO . . . J 6 31.151 24.926 127.858 1 63 ? O2 EDO 304 B 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 100 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #