data_5NEQ
#
_model_server_result.job_id            jhOH61Q3-1zQBjQQD-ZDMA 
_model_server_result.datetime_utc      '2024-10-13 07:26:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5neq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":101}' 
#
_entry.id    5NEQ 
#
_exptl.entry_id    5NEQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              74.085 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            AMINOGUANIDINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5NEQ 
_cell.length_a            55.463 
_cell.length_b            55.463 
_cell.length_c            130.276 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NEQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L 1 1 
A,B,C,D,E,F,G,H,I,J,K,L 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_455 y-1/3,x+1/3,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -27.7315 16.010789 43.425333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A O3' A 16 A A 16 1_555 A P CBV 17 A CBV 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? 
covale ? covale2 A O3' CBV 17 A CBV 17 1_555 A P C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.596 ? 
metalc ? metalc1 A O6 G 7 A G 7 1_555 K NA NA . A NA 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? 
metalc ? metalc2 A OP1 A 8 A A 8 1_555 I NA NA . A NA 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc3 A OP2 G 10 A G 10 1_555 K NA NA . A NA 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? 
metalc ? metalc4 A OP2 C 12 A C 12 1_555 H NA NA . A NA 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? 
metalc ? metalc5 A OP2 C 13 A C 13 1_555 H NA NA . A NA 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? 
metalc ? metalc6 E NA NA . A NA 104 1_555 L O HOH . A HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? 
metalc ? metalc7 E NA NA . A NA 104 1_555 L O HOH . A HOH 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc8 I NA NA . A NA 108 1_555 L O HOH . A HOH 229 10_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc9 K NA NA . A NA 110 1_555 L O HOH . A HOH 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
hydrog WATSON-CRICK hydrog1 A N1 G 1 A G 1 1_555 A N3 C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N2 G 1 A G 1 1_555 A O2 C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O6 G 1 A G 1 1_555 A N4 C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N1 G 2 A G 2 1_555 A N3 CBV 17 A CBV 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N2 G 2 A G 2 1_555 A O2 CBV 17 A CBV 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O6 G 2 A G 2 1_555 A N4 CBV 17 A CBV 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N3 U 3 A U 3 1_555 A N1 A 16 A A 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A O4 U 3 A U 3 1_555 A N6 A 16 A A 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N1 G 4 A G 4 1_555 A N3 C 15 A C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N2 G 4 A G 4 1_555 A O2 C 15 A C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A O6 G 4 A G 4 1_555 A N4 C 15 A C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A N1 G 5 A G 5 1_555 A N3 C 14 A C 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N2 G 5 A G 5 1_555 A O2 C 14 A C 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A O6 G 5 A G 5 1_555 A N4 C 14 A C 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A N1 G 6 A G 6 1_555 A N3 C 13 A C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N2 G 6 A G 6 1_555 A O2 C 13 A C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A O6 G 6 A G 6 1_555 A N4 C 13 A C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A N1 G 7 A G 7 1_555 A N3 C 12 A C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A N2 G 7 A G 7 1_555 A O2 C 12 A C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A O6 G 7 A G 7 1_555 A N4 C 12 A C 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C H6 N4' 
_chem_comp.formula_weight    74.085 
_chem_comp.id                AGU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              AMINOGUANIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C N1 AGU doub 40 n n 
C N2 AGU sing 41 n n 
C N3 AGU sing 42 n n 
N1 HN1 AGU sing 43 n n 
N2 HN21 AGU sing 44 n n 
N2 HN22 AGU sing 45 n n 
N3 N4 AGU sing 46 n n 
N3 HN3 AGU sing 47 n n 
N4 HN41 AGU sing 48 n n 
N4 HN42 AGU sing 49 n n 
#
_atom_sites.entry_id                     5NEQ 
_atom_sites.fract_transf_matrix[1][1]    0.01803 
_atom_sites.fract_transf_matrix[1][2]    0.01041 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020819 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007676 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AGU A 1 101 1 AGU AGU . 
C 3 SO4 A 1 102 1 SO4 SO4 . 
D 3 SO4 A 1 103 2 SO4 SO4 . 
E 4 NA A 1 104 1 NA NA . 
F 4 NA A 1 105 2 NA NA . 
G 4 NA A 1 106 3 NA NA . 
H 4 NA A 1 107 4 NA NA . 
I 4 NA A 1 108 5 NA NA . 
J 4 NA A 1 109 6 NA NA . 
K 4 NA A 1 110 7 NA NA . 
L 5 HOH A 1 201 27 HOH HOH . 
L 5 HOH A 2 202 23 HOH HOH . 
L 5 HOH A 3 203 19 HOH HOH . 
L 5 HOH A 4 204 6 HOH HOH . 
L 5 HOH A 5 205 2 HOH HOH . 
L 5 HOH A 6 206 7 HOH HOH . 
L 5 HOH A 7 207 21 HOH HOH . 
L 5 HOH A 8 208 11 HOH HOH . 
L 5 HOH A 9 209 31 HOH HOH . 
L 5 HOH A 10 210 33 HOH HOH . 
L 5 HOH A 11 211 16 HOH HOH . 
L 5 HOH A 12 212 25 HOH HOH . 
L 5 HOH A 13 213 5 HOH HOH . 
L 5 HOH A 14 214 14 HOH HOH . 
L 5 HOH A 15 215 36 HOH HOH . 
L 5 HOH A 16 216 32 HOH HOH . 
L 5 HOH A 17 217 12 HOH HOH . 
L 5 HOH A 18 218 1 HOH HOH . 
L 5 HOH A 19 219 18 HOH HOH . 
L 5 HOH A 20 220 24 HOH HOH . 
L 5 HOH A 21 221 4 HOH HOH . 
L 5 HOH A 22 222 3 HOH HOH . 
L 5 HOH A 23 223 26 HOH HOH . 
L 5 HOH A 24 224 37 HOH HOH . 
L 5 HOH A 25 225 10 HOH HOH . 
L 5 HOH A 26 226 22 HOH HOH . 
L 5 HOH A 27 227 8 HOH HOH . 
L 5 HOH A 28 228 30 HOH HOH . 
L 5 HOH A 29 229 20 HOH HOH . 
L 5 HOH A 30 230 35 HOH HOH . 
L 5 HOH A 31 231 15 HOH HOH . 
L 5 HOH A 32 232 17 HOH HOH . 
L 5 HOH A 33 233 34 HOH HOH . 
L 5 HOH A 34 234 13 HOH HOH . 
L 5 HOH A 35 235 28 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C AGU . . . B 2 -14.601 16.402 21.304 1 50.05 ? C AGU 101 A 1 
HETATM 2 N N1 AGU . . . B 2 -15.411 15.528 21.739 1 38.9 ? N1 AGU 101 A 1 
HETATM 3 N N2 AGU . . . B 2 -14.935 17.81 21.135 1 68.61 ? N2 AGU 101 A 1 
HETATM 4 N N3 AGU . . . B 2 -13.261 15.944 20.988 1 40.66 ? N3 AGU 101 A 1 
HETATM 5 N N4 AGU . . . B 2 -12.992 14.567 21.155 1 44.44 ? N4 AGU 101 A 1 
HETATM 6 H HN1 AGU . . . B 2 -16.244 15.759 21.951 1 46.68 ? HN1 AGU 101 A 1 
HETATM 7 H HN21 AGU . . . B 2 -15.724 18.091 21.331 1 82.34 ? HN21 AGU 101 A 1 
HETATM 8 H HN22 AGU . . . B 2 -14.342 18.36 20.844 1 82.34 ? HN22 AGU 101 A 1 
HETATM 9 H HN3 AGU . . . B 2 -12.665 16.483 20.684 1 48.8 ? HN3 AGU 101 A 1 
HETATM 10 H HN41 AGU . . . B 2 -12.599 14.251 20.422 1 53.33 ? HN41 AGU 101 A 1 
HETATM 11 H HN42 AGU . . . B 2 -13.754 14.13 21.296 1 53.33 ? HN42 AGU 101 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           484 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           11 
#