data_5NEV # _model_server_result.job_id wYN4UGlJv3FeVk1IDaCq1A _model_server_result.datetime_utc '2024-12-22 07:03:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nev # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 5NEV # _exptl.entry_id 5NEV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 442.493 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[[6-(3-phenylphenyl)-7~{H}-purin-2-yl]amino]benzenesulfonamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NEV _cell.length_a 73.527 _cell.length_b 132.053 _cell.length_c 149.22 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NEV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 164 A TYR 159 1_555 A N TPO 165 A TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C TPO 165 A TPO 160 1_555 A N HIS 166 A HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale3 C C TYR 164 C TYR 159 1_555 C N TPO 165 C TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 C C TPO 165 C TPO 160 1_555 C N HIS 166 C HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C23 H18 N6 O2 S' _chem_comp.formula_weight 442.493 _chem_comp.id 72L _chem_comp.mon_nstd_flag . _chem_comp.name 4-[[6-(3-phenylphenyl)-7~{H}-purin-2-yl]amino]benzenesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CE1 C15 72L doub 1 n y CE1 CD1 72L sing 2 n y C15 CE2 72L sing 3 n y CD1 CG 72L doub 4 n y CE2 C18 72L sing 5 n n CE2 CD2 72L doub 6 n y C19 C18 72L doub 7 n y C19 C20 72L sing 8 n y C18 C23 72L sing 9 n y C23 C22 72L doub 10 n y C20 C21 72L doub 11 n y CG CD2 72L sing 12 n y CG CB 72L sing 13 n n C22 C21 72L sing 14 n y N CA 72L sing 15 n y N C5 72L sing 16 n y OH S1 72L doub 17 n n CB CA 72L doub 18 n y CB N1 72L sing 19 n y CA C 72L sing 20 n y C5 N3 72L doub 21 n y N1 C2 72L doub 22 n y C N3 72L sing 23 n y C N2 72L doub 24 n y S1 O2 72L doub 25 n n S1 N6 72L sing 26 n n S1 C9 72L sing 27 n n C8 C7 72L doub 28 n y C8 C9 72L sing 29 n y C7 C6 72L sing 30 n y C2 N2 72L sing 31 n y C2 N5 72L sing 32 n n C9 C10 72L doub 33 n y C6 N5 72L sing 34 n n C6 C11 72L doub 35 n y C10 C11 72L sing 36 n y C5 H1 72L sing 37 n n C11 H3 72L sing 38 n n C7 H4 72L sing 39 n n C8 H5 72L sing 40 n n C10 H6 72L sing 41 n n N H8 72L sing 42 n n N5 H9 72L sing 43 n n N6 H10 72L sing 44 n n N6 H11 72L sing 45 n n CD1 H12 72L sing 46 n n CE1 H13 72L sing 47 n n C15 H14 72L sing 48 n n CD2 H15 72L sing 49 n n C19 H16 72L sing 50 n n C20 H17 72L sing 51 n n C21 H18 72L sing 52 n n C22 H19 72L sing 53 n n C23 H20 72L sing 54 n n # _atom_sites.entry_id 5NEV _atom_sites.fract_transf_matrix[1][1] 0.0136 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 72L A 1 301 1 72L DRG . F 3 72L C 1 301 2 72L DRG . G 4 HOH A 1 401 3 HOH HOH . G 4 HOH A 2 402 13 HOH HOH . G 4 HOH A 3 403 17 HOH HOH . G 4 HOH A 4 404 7 HOH HOH . G 4 HOH A 5 405 1 HOH HOH . G 4 HOH A 6 406 15 HOH HOH . G 4 HOH A 7 407 4 HOH HOH . G 4 HOH A 8 408 9 HOH HOH . G 4 HOH A 9 409 11 HOH HOH . G 4 HOH A 10 410 5 HOH HOH . G 4 HOH A 11 411 2 HOH HOH . G 4 HOH A 12 412 16 HOH HOH . H 4 HOH B 1 501 10 HOH HOH . H 4 HOH B 2 502 12 HOH HOH . I 4 HOH C 1 401 14 HOH HOH . J 4 HOH D 1 501 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 72L . . . E 3 -9.358 -20.551 22.199 1 99.51 ? C5 72L 301 A 1 HETATM 2 C C6 72L . . . E 3 -5.232 -25.146 25.497 1 113.88 ? C6 72L 301 A 1 HETATM 3 C C11 72L . . . E 3 -4.785 -25.799 26.646 1 115.7 ? C11 72L 301 A 1 HETATM 4 C C7 72L . . . E 3 -4.532 -25.347 24.3 1 116.42 ? C7 72L 301 A 1 HETATM 5 C C8 72L . . . E 3 -3.42 -26.157 24.266 1 120.78 ? C8 72L 301 A 1 HETATM 6 C C9 72L . . . E 3 -3.013 -26.797 25.406 1 122.59 ? C9 72L 301 A 1 HETATM 7 C C10 72L . . . E 3 -3.678 -26.612 26.602 1 120.03 ? C10 72L 301 A 1 HETATM 8 N N1 72L . . . E 3 -5.848 -22.878 23.742 1 109.55 ? N1 72L 301 A 1 HETATM 9 N N2 72L . . . E 3 -8.044 -22.883 24.51 1 104.49 ? N2 72L 301 A 1 HETATM 10 N N3 72L . . . E 3 -9.519 -21.39 23.25 1 99.96 ? N3 72L 301 A 1 HETATM 11 C CB 72L . . . E 3 -6.113 -21.981 22.751 1 107.98 ? CB 72L 301 A 1 HETATM 12 C C2 72L . . . E 3 -6.776 -23.33 24.608 1 107.81 ? C2 72L 301 A 1 HETATM 13 C C 72L . . . E 3 -8.375 -21.985 23.54 1 102.88 ? C 72L 301 A 1 HETATM 14 C CA 72L . . . E 3 -7.424 -21.522 22.635 1 104.47 ? CA 72L 301 A 1 HETATM 15 N N 72L . . . E 3 -8.109 -20.571 21.739 1 102.03 ? N 72L 301 A 1 HETATM 16 N N5 72L . . . E 3 -6.414 -24.289 25.612 1 109.69 ? N5 72L 301 A 1 HETATM 17 S S1 72L . . . E 3 -1.617 -27.793 25.27 1 128.5 ? S1 72L 301 A 1 HETATM 18 O OH 72L . . . E 3 -1.736 -28.65 24.162 1 130.53 ? OH 72L 301 A 1 HETATM 19 N N6 72L . . . E 3 -0.498 -26.594 24.966 1 129.46 ? N6 72L 301 A 1 HETATM 20 O O2 72L . . . E 3 -1.336 -28.561 26.429 1 130.44 ? O2 72L 301 A 1 HETATM 21 C CG 72L . . . E 3 -5.015 -21.573 21.82 1 110.25 ? CG 72L 301 A 1 HETATM 22 C CD1 72L . . . E 3 -5.176 -20.702 20.706 1 108.95 ? CD1 72L 301 A 1 HETATM 23 C CE1 72L . . . E 3 -4.09 -20.406 19.876 1 111.28 ? CE1 72L 301 A 1 HETATM 24 C C15 72L . . . E 3 -2.845 -20.974 20.124 1 115.12 ? C15 72L 301 A 1 HETATM 25 C CE2 72L . . . E 3 -2.708 -21.817 21.202 1 116.55 ? CE2 72L 301 A 1 HETATM 26 C CD2 72L . . . E 3 -3.753 -22.133 22.035 1 114.15 ? CD2 72L 301 A 1 HETATM 27 C C18 72L . . . E 3 -1.419 -22.429 21.493 1 120.99 ? C18 72L 301 A 1 HETATM 28 C C19 72L . . . E 3 -1.326 -23.772 21.322 1 123.95 ? C19 72L 301 A 1 HETATM 29 C C20 72L . . . E 3 -0.145 -24.359 21.589 1 128.36 ? C20 72L 301 A 1 HETATM 30 C C21 72L . . . E 3 0.931 -23.601 22.02 1 129.82 ? C21 72L 301 A 1 HETATM 31 C C22 72L . . . E 3 0.816 -22.243 22.187 1 126.79 ? C22 72L 301 A 1 HETATM 32 C C23 72L . . . E 3 -0.375 -21.651 21.92 1 122.33 ? C23 72L 301 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #