data_5NF5 # _model_server_result.job_id APRivlwp9DO22gN0XdERTw _model_server_result.datetime_utc '2024-11-25 05:11:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nf5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 5NF5 # _exptl.entry_id 5NF5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.149 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3~{a}~{S},4~{S},6~{a}~{R})-4,5,6,6~{a}-tetrahydro-3~{a}~{H}-pyrrolo[3,4-d][1,2]oxazole-3,4-dicarboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NF5 _cell.length_a 70.334 _cell.length_b 70.334 _cell.length_c 231.913 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NF5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 202 B CYS 202 1_555 A SG CYS 256 B CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 202 A CYS 202 1_555 B SG CYS 256 A CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C7 H8 N2 O5' _chem_comp.formula_weight 200.149 _chem_comp.id 8VN _chem_comp.mon_nstd_flag . _chem_comp.name '(3~{a}~{S},4~{S},6~{a}~{R})-4,5,6,6~{a}-tetrahydro-3~{a}~{H}-pyrrolo[3,4-d][1,2]oxazole-3,4-dicarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 8VN sing 1 n n C1 C5 8VN sing 2 n n N1 C2 8VN sing 3 n n C5 O1 8VN sing 4 n n C5 C4 8VN sing 5 n n O5 C7 8VN doub 6 n n O1 N2 8VN sing 7 n n C2 C7 8VN sing 8 n n C2 C4 8VN sing 9 n n N2 C3 8VN doub 10 n n C7 O4 8VN sing 11 n n C4 C3 8VN sing 12 n n C3 C6 8VN sing 13 n n O2 C6 8VN doub 14 n n C6 O3 8VN sing 15 n n C1 H1 8VN sing 16 n n C1 H2 8VN sing 17 n n C2 H3 8VN sing 18 n n C4 H4 8VN sing 19 n n C5 H5 8VN sing 20 n n O3 H6 8VN sing 21 n n O4 H7 8VN sing 22 n n N1 H8 8VN sing 23 n n # _atom_sites.entry_id 5NF5 _atom_sites.fract_transf_matrix[1][1] 0.014218 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014218 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004312 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL B 1 301 301 CL CL . D 2 CL B 1 302 302 CL CL . E 3 8VN B 1 303 303 8VN 8VN . F 4 GOL B 1 304 304 GOL GOL . G 4 GOL B 1 305 305 GOL GOL . H 3 8VN A 1 301 301 8VN 8VN . I 5 SO4 A 1 302 302 SO4 SO4 . J 4 GOL A 1 303 303 GOL GOL . K 4 GOL A 1 304 304 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8VN . . . H 3 -1.094 -34.271 12.617 1 70.55 ? C1 8VN 301 A 1 HETATM 2 C C2 8VN . . . H 3 -3.367 -34.983 12.319 1 70.72 ? C2 8VN 301 A 1 HETATM 3 C C3 8VN . . . H 3 -2.247 -36.864 13.753 1 59.68 ? C3 8VN 301 A 1 HETATM 4 C C4 8VN . . . H 3 -2.875 -35.504 13.699 1 66.9 ? C4 8VN 301 A 1 HETATM 5 C C5 8VN . . . H 3 -1.646 -34.671 13.989 1 67.01 ? C5 8VN 301 A 1 HETATM 6 C C6 8VN . . . H 3 -2.989 -38.083 13.235 1 55.95 ? C6 8VN 301 A 1 HETATM 7 C C7 8VN . . . H 3 -4.663 -34.15 12.488 1 72.92 ? C7 8VN 301 A 1 HETATM 8 O O1 8VN . . . H 3 -0.73 -35.547 14.635 1 61.73 ? O1 8VN 301 A 1 HETATM 9 O O3 8VN . . . H 3 -4.234 -38.055 13.237 1 54.38 ? O3 8VN 301 A 1 HETATM 10 O O4 8VN . . . H 3 -5.613 -34.666 13.109 1 73.7 ? O4 8VN 301 A 1 HETATM 11 O O5 8VN . . . H 3 -4.758 -32.998 12.008 1 73.07 ? O5 8VN 301 A 1 HETATM 12 N N1 8VN . . . H 3 -2.288 -34.13 11.778 1 70.9 ? N1 8VN 301 A 1 HETATM 13 N N2 8VN . . . H 3 -1.084 -36.866 14.262 1 57.24 ? N2 8VN 301 A 1 HETATM 14 O O2 8VN . . . H 3 -2.311 -39.052 12.835 1 55.69 ? O2 8VN 301 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #