data_5NF6 # _model_server_result.job_id cXNYfr4cWAUJaEv8DlFJHw _model_server_result.datetime_utc '2024-11-13 11:59:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nf6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 5NF6 # _exptl.entry_id 5NF6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NF6 _cell.length_a 130.138 _cell.length_b 56.071 _cell.length_c 87.516 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NF6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,K,L,M,N,P 1 1 A,C,D,E,F,G,H,I,J,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 K N N ? 2 L N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 203 B CYS 201 1_555 A SG CYS 257 B CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 203 A CYS 201 1_555 B SG CYS 257 A CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A OE1 GLU 44 B GLU 42 1_555 D ZN ZN . B ZN 302 4_557 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc2 A NE2 HIS 47 B HIS 45 1_555 D ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc3 A ND1 HIS 82 B HIS 80 1_555 E ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc4 A ND1 HIS 82 B HIS 80 1_555 E ZN ZN . B ZN 303 4_567 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc5 A NE2 HIS 95 B HIS 93 1_555 M ZN ZN . A ZN 303 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc6 A NZ LYS 99 B LYS 97 1_555 M ZN ZN . A ZN 303 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc7 A OD1 ASP 242 B ASP 240 1_555 C ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc8 A NZ LYS 243 B LYS 241 1_555 D ZN ZN . B ZN 302 4_557 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc9 A ND1 HIS 245 B HIS 243 1_555 C ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc10 C ZN ZN . B ZN 301 1_555 B ND1 HIS 95 A HIS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc11 C ZN ZN . B ZN 301 1_555 B OE1 GLU 98 A GLU 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? metalc ? metalc12 E ZN ZN . B ZN 303 1_555 G O ACT . B ACT 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc13 E ZN ZN . B ZN 303 1_555 G OXT ACT . B ACT 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc14 E ZN ZN . B ZN 303 1_555 G O ACT . B ACT 305 4_567 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc15 E ZN ZN . B ZN 303 1_555 G OXT ACT . B ACT 305 4_567 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc16 B NE2 HIS 47 A HIS 45 1_555 L ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc17 B ND1 HIS 82 A HIS 80 1_555 M ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc18 B OE1 GLU 196 A GLU 194 1_555 K ZN ZN . A ZN 301 4_557 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc19 B OE2 GLU 196 A GLU 194 1_555 K ZN ZN . A ZN 301 4_557 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? metalc ? metalc20 B NE2 HIS 245 A HIS 243 1_555 K ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? metalc ? metalc21 B NZ LYS 248 A LYS 246 1_555 K ZN ZN . A ZN 301 4_557 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc22 B OE2 GLU 249 A GLU 247 1_555 K ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? metalc ? metalc23 L ZN ZN . A ZN 302 1_555 P O HOH . A HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5NF6 _atom_sites.fract_transf_matrix[1][1] 0.007684 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011426 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN B 1 301 301 ZN ZN . D 2 ZN B 1 302 302 ZN ZN . E 2 ZN B 1 303 303 ZN ZN . F 3 8VN B 1 304 304 8VN 8VN . G 4 ACT B 1 305 305 ACT ACT . H 5 GOL B 1 306 306 GOL GOL . I 5 GOL B 1 307 307 GOL GOL . J 6 CL B 1 308 308 CL CL . K 2 ZN A 1 301 301 ZN ZN . L 2 ZN A 1 302 302 ZN ZN . M 2 ZN A 1 303 303 ZN ZN . N 3 8VN A 1 304 304 8VN 8VN . O 7 HOH B 1 401 401 HOH HOH . O 7 HOH B 2 402 402 HOH HOH . O 7 HOH B 3 403 403 HOH HOH . O 7 HOH B 4 404 404 HOH HOH . O 7 HOH B 5 405 405 HOH HOH . O 7 HOH B 6 406 406 HOH HOH . O 7 HOH B 7 407 407 HOH HOH . O 7 HOH B 8 408 408 HOH HOH . O 7 HOH B 9 409 409 HOH HOH . O 7 HOH B 10 410 410 HOH HOH . O 7 HOH B 11 411 411 HOH HOH . O 7 HOH B 12 412 412 HOH HOH . O 7 HOH B 13 413 413 HOH HOH . O 7 HOH B 14 414 414 HOH HOH . O 7 HOH B 15 415 415 HOH HOH . O 7 HOH B 16 416 416 HOH HOH . O 7 HOH B 17 417 417 HOH HOH . O 7 HOH B 18 418 418 HOH HOH . O 7 HOH B 19 419 419 HOH HOH . O 7 HOH B 20 420 420 HOH HOH . O 7 HOH B 21 421 421 HOH HOH . O 7 HOH B 22 422 422 HOH HOH . O 7 HOH B 23 423 423 HOH HOH . O 7 HOH B 24 424 424 HOH HOH . O 7 HOH B 25 425 425 HOH HOH . O 7 HOH B 26 426 426 HOH HOH . O 7 HOH B 27 427 427 HOH HOH . O 7 HOH B 28 428 428 HOH HOH . O 7 HOH B 29 429 429 HOH HOH . O 7 HOH B 30 430 430 HOH HOH . O 7 HOH B 31 431 431 HOH HOH . O 7 HOH B 32 432 432 HOH HOH . O 7 HOH B 33 433 433 HOH HOH . O 7 HOH B 34 434 434 HOH HOH . O 7 HOH B 35 435 435 HOH HOH . O 7 HOH B 36 436 436 HOH HOH . O 7 HOH B 37 437 437 HOH HOH . O 7 HOH B 38 438 438 HOH HOH . O 7 HOH B 39 439 439 HOH HOH . O 7 HOH B 40 440 440 HOH HOH . O 7 HOH B 41 441 441 HOH HOH . O 7 HOH B 42 442 442 HOH HOH . O 7 HOH B 43 443 443 HOH HOH . O 7 HOH B 44 444 444 HOH HOH . O 7 HOH B 45 445 445 HOH HOH . O 7 HOH B 46 446 446 HOH HOH . O 7 HOH B 47 447 447 HOH HOH . O 7 HOH B 48 448 448 HOH HOH . O 7 HOH B 49 449 449 HOH HOH . O 7 HOH B 50 450 450 HOH HOH . P 7 HOH A 1 401 401 HOH HOH . P 7 HOH A 2 402 402 HOH HOH . P 7 HOH A 3 403 403 HOH HOH . P 7 HOH A 4 404 404 HOH HOH . P 7 HOH A 5 405 405 HOH HOH . P 7 HOH A 6 406 406 HOH HOH . P 7 HOH A 7 407 407 HOH HOH . P 7 HOH A 8 408 408 HOH HOH . P 7 HOH A 9 409 409 HOH HOH . P 7 HOH A 10 410 410 HOH HOH . P 7 HOH A 11 411 411 HOH HOH . P 7 HOH A 12 412 412 HOH HOH . P 7 HOH A 13 413 413 HOH HOH . P 7 HOH A 14 414 414 HOH HOH . P 7 HOH A 15 415 415 HOH HOH . P 7 HOH A 16 416 416 HOH HOH . P 7 HOH A 17 417 417 HOH HOH . P 7 HOH A 18 418 418 HOH HOH . P 7 HOH A 19 419 419 HOH HOH . P 7 HOH A 20 420 420 HOH HOH . P 7 HOH A 21 421 421 HOH HOH . P 7 HOH A 22 422 422 HOH HOH . P 7 HOH A 23 423 423 HOH HOH . P 7 HOH A 24 424 424 HOH HOH . P 7 HOH A 25 425 425 HOH HOH . P 7 HOH A 26 426 426 HOH HOH . P 7 HOH A 27 427 427 HOH HOH . P 7 HOH A 28 428 428 HOH HOH . P 7 HOH A 29 429 429 HOH HOH . P 7 HOH A 30 430 430 HOH HOH . P 7 HOH A 31 431 431 HOH HOH . P 7 HOH A 32 432 432 HOH HOH . P 7 HOH A 33 433 433 HOH HOH . P 7 HOH A 34 434 434 HOH HOH . P 7 HOH A 35 435 435 HOH HOH . P 7 HOH A 36 436 436 HOH HOH . P 7 HOH A 37 437 437 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 2 _atom_site.Cartn_x 13.873 _atom_site.Cartn_y -0.52 _atom_site.Cartn_z 83.058 _atom_site.occupancy 0.87 _atom_site.B_iso_or_equiv 39.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #