data_5NFJ
#
_model_server_result.job_id            pFfrz4EXtpoXdTwRySwHRw 
_model_server_result.datetime_utc      '2024-11-21 13:23:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nfj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":502}' 
#
_entry.id    5NFJ 
#
_exptl.entry_id    5NFJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NFJ 
_cell.length_a            82.64 
_cell.length_b            82.64 
_cell.length_c            148.62 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NFJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,R 1 1 
B,J,K,L,M,N,O,S 2 1 
C,P,Q,T 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 Q N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     5NFJ 
_atom_sites.fract_transf_matrix[1][1]    0.012101 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012101 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006729 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 SAM A 1 501 500 SAM SAM . 
E 3 GOL A 1 502 1 GOL GOL . 
F 3 GOL A 1 503 2 GOL GOL . 
G 3 GOL A 1 504 3 GOL GOL . 
H 4 EDO A 1 505 2 EDO EDO . 
I 4 EDO A 1 506 5 EDO EDO . 
J 2 SAM B 1 501 500 SAM SAM . 
K 3 GOL B 1 502 4 GOL GOL . 
L 3 GOL B 1 503 5 GOL GOL . 
M 3 GOL B 1 504 8 GOL GOL . 
N 4 EDO B 1 505 6 EDO EDO . 
O 4 EDO B 1 506 7 EDO EDO . 
P 2 SAM C 1 501 500 SAM SAM . 
Q 3 GOL C 1 502 6 GOL GOL . 
R 5 HOH A 1 601 224 HOH HOH . 
R 5 HOH A 2 602 122 HOH HOH . 
R 5 HOH A 3 603 187 HOH HOH . 
R 5 HOH A 4 604 134 HOH HOH . 
R 5 HOH A 5 605 157 HOH HOH . 
R 5 HOH A 6 606 253 HOH HOH . 
R 5 HOH A 7 607 82 HOH HOH . 
R 5 HOH A 8 608 256 HOH HOH . 
R 5 HOH A 9 609 89 HOH HOH . 
R 5 HOH A 10 610 81 HOH HOH . 
R 5 HOH A 11 611 250 HOH HOH . 
R 5 HOH A 12 612 24 HOH HOH . 
R 5 HOH A 13 613 104 HOH HOH . 
R 5 HOH A 14 614 88 HOH HOH . 
R 5 HOH A 15 615 19 HOH HOH . 
R 5 HOH A 16 616 54 HOH HOH . 
R 5 HOH A 17 617 26 HOH HOH . 
R 5 HOH A 18 618 144 HOH HOH . 
R 5 HOH A 19 619 105 HOH HOH . 
R 5 HOH A 20 620 127 HOH HOH . 
R 5 HOH A 21 621 43 HOH HOH . 
R 5 HOH A 22 622 23 HOH HOH . 
R 5 HOH A 23 623 219 HOH HOH . 
R 5 HOH A 24 624 58 HOH HOH . 
R 5 HOH A 25 625 174 HOH HOH . 
R 5 HOH A 26 626 178 HOH HOH . 
R 5 HOH A 27 627 216 HOH HOH . 
R 5 HOH A 28 628 197 HOH HOH . 
R 5 HOH A 29 629 101 HOH HOH . 
R 5 HOH A 30 630 184 HOH HOH . 
R 5 HOH A 31 631 152 HOH HOH . 
R 5 HOH A 32 632 133 HOH HOH . 
R 5 HOH A 33 633 177 HOH HOH . 
R 5 HOH A 34 634 191 HOH HOH . 
R 5 HOH A 35 635 215 HOH HOH . 
R 5 HOH A 36 636 9 HOH HOH . 
R 5 HOH A 37 637 151 HOH HOH . 
R 5 HOH A 38 638 27 HOH HOH . 
R 5 HOH A 39 639 123 HOH HOH . 
R 5 HOH A 40 640 188 HOH HOH . 
R 5 HOH A 41 641 70 HOH HOH . 
R 5 HOH A 42 642 69 HOH HOH . 
R 5 HOH A 43 643 97 HOH HOH . 
R 5 HOH A 44 644 66 HOH HOH . 
R 5 HOH A 45 645 41 HOH HOH . 
R 5 HOH A 46 646 17 HOH HOH . 
R 5 HOH A 47 647 158 HOH HOH . 
R 5 HOH A 48 648 20 HOH HOH . 
R 5 HOH A 49 649 49 HOH HOH . 
R 5 HOH A 50 650 207 HOH HOH . 
R 5 HOH A 51 651 222 HOH HOH . 
R 5 HOH A 52 652 220 HOH HOH . 
R 5 HOH A 53 653 154 HOH HOH . 
R 5 HOH A 54 654 159 HOH HOH . 
R 5 HOH A 55 655 285 HOH HOH . 
R 5 HOH A 56 656 129 HOH HOH . 
R 5 HOH A 57 657 185 HOH HOH . 
R 5 HOH A 58 658 143 HOH HOH . 
R 5 HOH A 59 659 249 HOH HOH . 
R 5 HOH A 60 660 34 HOH HOH . 
R 5 HOH A 61 661 95 HOH HOH . 
R 5 HOH A 62 662 284 HOH HOH . 
R 5 HOH A 63 663 77 HOH HOH . 
R 5 HOH A 64 664 227 HOH HOH . 
S 5 HOH B 1 601 228 HOH HOH . 
S 5 HOH B 2 602 140 HOH HOH . 
S 5 HOH B 3 603 18 HOH HOH . 
S 5 HOH B 4 604 221 HOH HOH . 
S 5 HOH B 5 605 35 HOH HOH . 
S 5 HOH B 6 606 114 HOH HOH . 
S 5 HOH B 7 607 102 HOH HOH . 
S 5 HOH B 8 608 31 HOH HOH . 
S 5 HOH B 9 609 64 HOH HOH . 
S 5 HOH B 10 610 109 HOH HOH . 
S 5 HOH B 11 611 11 HOH HOH . 
S 5 HOH B 12 612 25 HOH HOH . 
S 5 HOH B 13 613 121 HOH HOH . 
S 5 HOH B 14 614 113 HOH HOH . 
S 5 HOH B 15 615 111 HOH HOH . 
S 5 HOH B 16 616 67 HOH HOH . 
S 5 HOH B 17 617 155 HOH HOH . 
S 5 HOH B 18 618 48 HOH HOH . 
S 5 HOH B 19 619 46 HOH HOH . 
S 5 HOH B 20 620 73 HOH HOH . 
S 5 HOH B 21 621 45 HOH HOH . 
S 5 HOH B 22 622 167 HOH HOH . 
S 5 HOH B 23 623 116 HOH HOH . 
S 5 HOH B 24 624 280 HOH HOH . 
S 5 HOH B 25 625 118 HOH HOH . 
S 5 HOH B 26 626 93 HOH HOH . 
S 5 HOH B 27 627 136 HOH HOH . 
S 5 HOH B 28 628 163 HOH HOH . 
S 5 HOH B 29 629 22 HOH HOH . 
S 5 HOH B 30 630 13 HOH HOH . 
S 5 HOH B 31 631 29 HOH HOH . 
S 5 HOH B 32 632 14 HOH HOH . 
S 5 HOH B 33 633 166 HOH HOH . 
S 5 HOH B 34 634 52 HOH HOH . 
S 5 HOH B 35 635 37 HOH HOH . 
S 5 HOH B 36 636 80 HOH HOH . 
S 5 HOH B 37 637 234 HOH HOH . 
S 5 HOH B 38 638 62 HOH HOH . 
S 5 HOH B 39 639 1 HOH HOH . 
S 5 HOH B 40 640 33 HOH HOH . 
S 5 HOH B 41 641 164 HOH HOH . 
S 5 HOH B 42 642 145 HOH HOH . 
S 5 HOH B 43 643 126 HOH HOH . 
S 5 HOH B 44 644 21 HOH HOH . 
S 5 HOH B 45 645 175 HOH HOH . 
S 5 HOH B 46 646 268 HOH HOH . 
S 5 HOH B 47 647 61 HOH HOH . 
S 5 HOH B 48 648 38 HOH HOH . 
S 5 HOH B 49 649 40 HOH HOH . 
S 5 HOH B 50 650 30 HOH HOH . 
S 5 HOH B 51 651 115 HOH HOH . 
S 5 HOH B 52 652 258 HOH HOH . 
S 5 HOH B 53 653 50 HOH HOH . 
S 5 HOH B 54 654 12 HOH HOH . 
S 5 HOH B 55 655 135 HOH HOH . 
S 5 HOH B 56 656 90 HOH HOH . 
S 5 HOH B 57 657 71 HOH HOH . 
S 5 HOH B 58 658 195 HOH HOH . 
S 5 HOH B 59 659 2 HOH HOH . 
S 5 HOH B 60 660 72 HOH HOH . 
S 5 HOH B 61 661 56 HOH HOH . 
S 5 HOH B 62 662 84 HOH HOH . 
S 5 HOH B 63 663 94 HOH HOH . 
S 5 HOH B 64 664 203 HOH HOH . 
S 5 HOH B 65 665 8 HOH HOH . 
S 5 HOH B 66 666 156 HOH HOH . 
S 5 HOH B 67 667 99 HOH HOH . 
S 5 HOH B 68 668 32 HOH HOH . 
S 5 HOH B 69 669 53 HOH HOH . 
S 5 HOH B 70 670 248 HOH HOH . 
S 5 HOH B 71 671 149 HOH HOH . 
S 5 HOH B 72 672 179 HOH HOH . 
S 5 HOH B 73 673 230 HOH HOH . 
S 5 HOH B 74 674 190 HOH HOH . 
S 5 HOH B 75 675 173 HOH HOH . 
S 5 HOH B 76 676 247 HOH HOH . 
S 5 HOH B 77 677 100 HOH HOH . 
S 5 HOH B 78 678 110 HOH HOH . 
S 5 HOH B 79 679 176 HOH HOH . 
S 5 HOH B 80 680 108 HOH HOH . 
S 5 HOH B 81 681 85 HOH HOH . 
S 5 HOH B 82 682 254 HOH HOH . 
S 5 HOH B 83 683 264 HOH HOH . 
S 5 HOH B 84 684 147 HOH HOH . 
S 5 HOH B 85 685 172 HOH HOH . 
S 5 HOH B 86 686 112 HOH HOH . 
S 5 HOH B 87 687 165 HOH HOH . 
S 5 HOH B 88 688 266 HOH HOH . 
T 5 HOH C 1 601 252 HOH HOH . 
T 5 HOH C 2 602 245 HOH HOH . 
T 5 HOH C 3 603 3 HOH HOH . 
T 5 HOH C 4 604 42 HOH HOH . 
T 5 HOH C 5 605 186 HOH HOH . 
T 5 HOH C 6 606 59 HOH HOH . 
T 5 HOH C 7 607 16 HOH HOH . 
T 5 HOH C 8 608 153 HOH HOH . 
T 5 HOH C 9 609 146 HOH HOH . 
T 5 HOH C 10 610 87 HOH HOH . 
T 5 HOH C 11 611 160 HOH HOH . 
T 5 HOH C 12 612 57 HOH HOH . 
T 5 HOH C 13 613 181 HOH HOH . 
T 5 HOH C 14 614 120 HOH HOH . 
T 5 HOH C 15 615 10 HOH HOH . 
T 5 HOH C 16 616 161 HOH HOH . 
T 5 HOH C 17 617 189 HOH HOH . 
T 5 HOH C 18 618 79 HOH HOH . 
T 5 HOH C 19 619 92 HOH HOH . 
T 5 HOH C 20 620 28 HOH HOH . 
T 5 HOH C 21 621 150 HOH HOH . 
T 5 HOH C 22 622 106 HOH HOH . 
T 5 HOH C 23 623 47 HOH HOH . 
T 5 HOH C 24 624 117 HOH HOH . 
T 5 HOH C 25 625 36 HOH HOH . 
T 5 HOH C 26 626 119 HOH HOH . 
T 5 HOH C 27 627 15 HOH HOH . 
T 5 HOH C 28 628 265 HOH HOH . 
T 5 HOH C 29 629 39 HOH HOH . 
T 5 HOH C 30 630 255 HOH HOH . 
T 5 HOH C 31 631 180 HOH HOH . 
T 5 HOH C 32 632 4 HOH HOH . 
T 5 HOH C 33 633 214 HOH HOH . 
T 5 HOH C 34 634 7 HOH HOH . 
T 5 HOH C 35 635 55 HOH HOH . 
T 5 HOH C 36 636 274 HOH HOH . 
T 5 HOH C 37 637 51 HOH HOH . 
T 5 HOH C 38 638 60 HOH HOH . 
T 5 HOH C 39 639 276 HOH HOH . 
T 5 HOH C 40 640 75 HOH HOH . 
T 5 HOH C 41 641 83 HOH HOH . 
T 5 HOH C 42 642 68 HOH HOH . 
T 5 HOH C 43 643 63 HOH HOH . 
T 5 HOH C 44 644 132 HOH HOH . 
T 5 HOH C 45 645 168 HOH HOH . 
T 5 HOH C 46 646 78 HOH HOH . 
T 5 HOH C 47 647 5 HOH HOH . 
T 5 HOH C 48 648 103 HOH HOH . 
T 5 HOH C 49 649 130 HOH HOH . 
T 5 HOH C 50 650 96 HOH HOH . 
T 5 HOH C 51 651 107 HOH HOH . 
T 5 HOH C 52 652 162 HOH HOH . 
T 5 HOH C 53 653 98 HOH HOH . 
T 5 HOH C 54 654 91 HOH HOH . 
T 5 HOH C 55 655 202 HOH HOH . 
T 5 HOH C 56 656 6 HOH HOH . 
T 5 HOH C 57 657 44 HOH HOH . 
T 5 HOH C 58 658 212 HOH HOH . 
T 5 HOH C 59 659 194 HOH HOH . 
T 5 HOH C 60 660 142 HOH HOH . 
T 5 HOH C 61 661 237 HOH HOH . 
T 5 HOH C 62 662 128 HOH HOH . 
T 5 HOH C 63 663 200 HOH HOH . 
T 5 HOH C 64 664 86 HOH HOH . 
T 5 HOH C 65 665 148 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 -28.701 38.223 -2.621 1 95.3 ? C1 GOL 502 A 1 
HETATM 2 O O1 GOL . . . E 3 -28.122 38.041 -1.321 1 104.94 ? O1 GOL 502 A 1 
HETATM 3 C C2 GOL . . . E 3 -28.074 37.209 -3.561 1 85.21 ? C2 GOL 502 A 1 
HETATM 4 O O2 GOL . . . E 3 -28.803 36.003 -3.473 1 81.5 ? O2 GOL 502 A 1 
HETATM 5 C C3 GOL . . . E 3 -28.163 37.599 -5.018 1 85.75 ? C3 GOL 502 A 1 
HETATM 6 O O3 GOL . . . E 3 -27.736 36.463 -5.782 1 68.61 ? O3 GOL 502 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#