data_5NFM # _model_server_result.job_id PasU5Ki6Dm41j1xyfUFLdg _model_server_result.datetime_utc '2025-02-27 12:49:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nfm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 5NFM # _exptl.entry_id 5NFM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 6.941 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LITHIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NFM _cell.length_a 30.752 _cell.length_b 32.159 _cell.length_c 62.575 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NFM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 23 A ASP 25 1_555 B LI LI . A LI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? metalc ? metalc2 A O LEU 24 A LEU 26 1_555 B LI LI . A LI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc3 A OD1 ASP 27 A ASP 29 1_555 B LI LI . A LI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc4 A O HIS 30 A HIS 32 1_555 B LI LI . A LI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc5 A NE2 HIS 30 A HIS 32 1_555 C CU CU . A CU 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc6 A NE2 HIS 65 A HIS 67 1_555 C CU CU . A CU 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc7 C CU CU . A CU 102 1_555 D O HOH . A HOH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc8 C CU CU . A CU 102 1_555 D O HOH . A HOH 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc9 C CU CU . A CU 102 1_555 D O HOH . A HOH 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc10 C CU CU . A CU 102 1_555 D O HOH . A HOH 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? # _chem_comp.formula 'Li 1' _chem_comp.formula_weight 6.941 _chem_comp.id LI _chem_comp.mon_nstd_flag . _chem_comp.name 'LITHIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5NFM _atom_sites.fract_transf_matrix[1][1] 0.032518 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.031095 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015981 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LI A 1 101 80 LI LI . C 3 CU A 1 102 81 CU CU . D 4 HOH A 1 201 108 HOH HOH . D 4 HOH A 2 202 57 HOH HOH . D 4 HOH A 3 203 128 HOH HOH . D 4 HOH A 4 204 105 HOH HOH . D 4 HOH A 5 205 136 HOH HOH . D 4 HOH A 6 206 64 HOH HOH . D 4 HOH A 7 207 160 HOH HOH . D 4 HOH A 8 208 45 HOH HOH . D 4 HOH A 9 209 69 HOH HOH . D 4 HOH A 10 210 129 HOH HOH . D 4 HOH A 11 211 84 HOH HOH . D 4 HOH A 12 212 4 HOH HOH . D 4 HOH A 13 213 9 HOH HOH . D 4 HOH A 14 214 53 HOH HOH . D 4 HOH A 15 215 7 HOH HOH . D 4 HOH A 16 216 96 HOH HOH . D 4 HOH A 17 217 6 HOH HOH . D 4 HOH A 18 218 54 HOH HOH . D 4 HOH A 19 219 101 HOH HOH . D 4 HOH A 20 220 140 HOH HOH . D 4 HOH A 21 221 102 HOH HOH . D 4 HOH A 22 222 48 HOH HOH . D 4 HOH A 23 223 50 HOH HOH . D 4 HOH A 24 224 3 HOH HOH . D 4 HOH A 25 225 103 HOH HOH . D 4 HOH A 26 226 27 HOH HOH . D 4 HOH A 27 227 18 HOH HOH . D 4 HOH A 28 228 55 HOH HOH . D 4 HOH A 29 229 10 HOH HOH . D 4 HOH A 30 230 135 HOH HOH . D 4 HOH A 31 231 74 HOH HOH . D 4 HOH A 32 232 11 HOH HOH . D 4 HOH A 33 233 148 HOH HOH . D 4 HOH A 34 234 110 HOH HOH . D 4 HOH A 35 235 39 HOH HOH . D 4 HOH A 36 236 72 HOH HOH . D 4 HOH A 37 237 32 HOH HOH . D 4 HOH A 38 238 23 HOH HOH . D 4 HOH A 39 239 90 HOH HOH . D 4 HOH A 40 240 79 HOH HOH . D 4 HOH A 41 241 37 HOH HOH . D 4 HOH A 42 242 36 HOH HOH . D 4 HOH A 43 243 70 HOH HOH . D 4 HOH A 44 244 146 HOH HOH . D 4 HOH A 45 245 20 HOH HOH . D 4 HOH A 46 246 156 HOH HOH . D 4 HOH A 47 247 51 HOH HOH . D 4 HOH A 48 248 8 HOH HOH . D 4 HOH A 49 249 29 HOH HOH . D 4 HOH A 50 250 14 HOH HOH . D 4 HOH A 51 251 56 HOH HOH . D 4 HOH A 52 252 66 HOH HOH . D 4 HOH A 53 253 5 HOH HOH . D 4 HOH A 54 254 81 HOH HOH . D 4 HOH A 55 255 47 HOH HOH . D 4 HOH A 56 256 91 HOH HOH . D 4 HOH A 57 257 33 HOH HOH . D 4 HOH A 58 258 52 HOH HOH . D 4 HOH A 59 259 17 HOH HOH . D 4 HOH A 60 260 41 HOH HOH . D 4 HOH A 61 261 42 HOH HOH . D 4 HOH A 62 262 2 HOH HOH . D 4 HOH A 63 263 15 HOH HOH . D 4 HOH A 64 264 49 HOH HOH . D 4 HOH A 65 265 22 HOH HOH . D 4 HOH A 66 266 62 HOH HOH . D 4 HOH A 67 267 38 HOH HOH . D 4 HOH A 68 268 77 HOH HOH . D 4 HOH A 69 269 126 HOH HOH . D 4 HOH A 70 270 68 HOH HOH . D 4 HOH A 71 271 80 HOH HOH . D 4 HOH A 72 272 43 HOH HOH . D 4 HOH A 73 273 67 HOH HOH . D 4 HOH A 74 274 89 HOH HOH . D 4 HOH A 75 275 71 HOH HOH . D 4 HOH A 76 276 60 HOH HOH . D 4 HOH A 77 277 24 HOH HOH . D 4 HOH A 78 278 21 HOH HOH . D 4 HOH A 79 279 28 HOH HOH . D 4 HOH A 80 280 112 HOH HOH . D 4 HOH A 81 281 76 HOH HOH . D 4 HOH A 82 282 30 HOH HOH . D 4 HOH A 83 283 75 HOH HOH . D 4 HOH A 84 284 44 HOH HOH . D 4 HOH A 85 285 147 HOH HOH . D 4 HOH A 86 286 65 HOH HOH . D 4 HOH A 87 287 31 HOH HOH . D 4 HOH A 88 288 107 HOH HOH . D 4 HOH A 89 289 143 HOH HOH . D 4 HOH A 90 290 88 HOH HOH . D 4 HOH A 91 291 19 HOH HOH . D 4 HOH A 92 292 144 HOH HOH . D 4 HOH A 93 293 111 HOH HOH . D 4 HOH A 94 294 93 HOH HOH . D 4 HOH A 95 295 85 HOH HOH . D 4 HOH A 96 296 141 HOH HOH . D 4 HOH A 97 297 98 HOH HOH . D 4 HOH A 98 298 114 HOH HOH . D 4 HOH A 99 299 92 HOH HOH . D 4 HOH A 100 300 104 HOH HOH . D 4 HOH A 101 301 159 HOH HOH . D 4 HOH A 102 302 16 HOH HOH . D 4 HOH A 103 303 151 HOH HOH . D 4 HOH A 104 304 116 HOH HOH . D 4 HOH A 105 305 97 HOH HOH . D 4 HOH A 106 306 125 HOH HOH . D 4 HOH A 107 307 1 HOH HOH . D 4 HOH A 108 308 113 HOH HOH . D 4 HOH A 109 309 127 HOH HOH . D 4 HOH A 110 310 123 HOH HOH . D 4 HOH A 111 311 87 HOH HOH . D 4 HOH A 112 312 118 HOH HOH . D 4 HOH A 113 313 115 HOH HOH . D 4 HOH A 114 314 149 HOH HOH . D 4 HOH A 115 315 13 HOH HOH . D 4 HOH A 116 316 155 HOH HOH . D 4 HOH A 117 317 142 HOH HOH . D 4 HOH A 118 318 78 HOH HOH . D 4 HOH A 119 319 133 HOH HOH . D 4 HOH A 120 320 83 HOH HOH . D 4 HOH A 121 321 139 HOH HOH . D 4 HOH A 122 322 100 HOH HOH . D 4 HOH A 123 323 94 HOH HOH . D 4 HOH A 124 324 124 HOH HOH . D 4 HOH A 125 325 59 HOH HOH . D 4 HOH A 126 326 157 HOH HOH . D 4 HOH A 127 327 61 HOH HOH . D 4 HOH A 128 328 82 HOH HOH . D 4 HOH A 129 329 26 HOH HOH . D 4 HOH A 130 330 46 HOH HOH . D 4 HOH A 131 331 154 HOH HOH . D 4 HOH A 132 332 119 HOH HOH . D 4 HOH A 133 333 12 HOH HOH . D 4 HOH A 134 334 122 HOH HOH . D 4 HOH A 135 335 106 HOH HOH . D 4 HOH A 136 336 40 HOH HOH . D 4 HOH A 137 337 58 HOH HOH . D 4 HOH A 138 338 158 HOH HOH . D 4 HOH A 139 339 73 HOH HOH . D 4 HOH A 140 340 34 HOH HOH . D 4 HOH A 141 341 109 HOH HOH . D 4 HOH A 142 342 131 HOH HOH . D 4 HOH A 143 343 138 HOH HOH . D 4 HOH A 144 344 95 HOH HOH . D 4 HOH A 145 345 99 HOH HOH . D 4 HOH A 146 346 63 HOH HOH . D 4 HOH A 147 347 25 HOH HOH . D 4 HOH A 148 348 145 HOH HOH . D 4 HOH A 149 349 153 HOH HOH . D 4 HOH A 150 350 121 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol LI _atom_site.label_atom_id LI _atom_site.label_comp_id LI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 2.326 _atom_site.Cartn_y 0.673 _atom_site.Cartn_z -21.324 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 2.93 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id LI _atom_site.auth_comp_id LI _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #