data_5NFP # _model_server_result.job_id dTFAty3Uq1en5gH-dsqcwg _model_server_result.datetime_utc '2024-12-02 23:50:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nfp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":804}' # _entry.id 5NFP # _exptl.entry_id 5NFP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.534 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1~{S},2~{S},4~{R},6~{R},8~{S},9~{S},11~{S},12~{S},13~{R})-9,13-dimethyl-11-oxidanyl-8-(2-oxidanylethanoyl)-6-propyl-5,7-dioxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icosa-14,17-dien-16-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5NFP _cell.length_a 83.99 _cell.length_b 83.99 _cell.length_c 106.09 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NFP _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H34 O6' _chem_comp.formula_weight 430.534 _chem_comp.id 8W5 _chem_comp.mon_nstd_flag . _chem_comp.name (1~{S},2~{S},4~{R},6~{R},8~{S},9~{S},11~{S},12~{S},13~{R})-9,13-dimethyl-11-oxidanyl-8-(2-oxidanylethanoyl)-6-propyl-5,7-dioxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icosa-14,17-dien-16-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O19 C18 8W5 doub 1 n n C18 C20 8W5 sing 2 n n C18 C17 8W5 sing 3 n n C20 C21 8W5 doub 4 n n C17 C16 8W5 doub 5 n n C21 C22 8W5 sing 6 n n C16 C15 8W5 sing 7 n n C16 C22 8W5 sing 8 n n C37 C22 8W5 sing 9 n n C15 C14 8W5 sing 10 n n C22 C23 8W5 sing 11 n n C23 C12 8W5 sing 12 n n C23 C25 8W5 sing 13 n n C14 C12 8W5 sing 14 n n O36 C25 8W5 sing 15 n n C12 C10 8W5 sing 16 n n C25 C27 8W5 sing 17 n n C10 C28 8W5 sing 18 n n C10 C9 8W5 sing 19 n n C27 C28 8W5 sing 20 n n C28 C35 8W5 sing 21 n n C28 C29 8W5 sing 22 n n C9 C7 8W5 sing 23 n n C1 C2 8W5 sing 24 n n C3 C2 8W5 sing 25 n n C3 C4 8W5 sing 26 n n C29 O30 8W5 sing 27 n n C29 C7 8W5 sing 28 n n C29 C31 8W5 sing 29 n n O30 C4 8W5 sing 30 n n C7 O6 8W5 sing 31 n n O6 C4 8W5 sing 32 n n C31 C33 8W5 sing 33 n n C31 O32 8W5 doub 34 n n C33 O34 8W5 sing 35 n n C1 H1 8W5 sing 36 n n C1 H2 8W5 sing 37 n n C1 H3 8W5 sing 38 n n C2 H4 8W5 sing 39 n n C2 H5 8W5 sing 40 n n C3 H6 8W5 sing 41 n n C3 H7 8W5 sing 42 n n C7 H8 8W5 sing 43 n n C9 H9 8W5 sing 44 n n C9 H10 8W5 sing 45 n n C10 H11 8W5 sing 46 n n C12 H12 8W5 sing 47 n n C14 H13 8W5 sing 48 n n C14 H14 8W5 sing 49 n n C15 H15 8W5 sing 50 n n C15 H16 8W5 sing 51 n n C20 H17 8W5 sing 52 n n C21 H18 8W5 sing 53 n n C27 H19 8W5 sing 54 n n C27 H20 8W5 sing 55 n n C33 H21 8W5 sing 56 n n C33 H22 8W5 sing 57 n n C35 H23 8W5 sing 58 n n C35 H24 8W5 sing 59 n n C35 H25 8W5 sing 60 n n C4 H26 8W5 sing 61 n n C17 H27 8W5 sing 62 n n C23 H28 8W5 sing 63 n n C25 H29 8W5 sing 64 n n O34 H30 8W5 sing 65 n n O36 H31 8W5 sing 66 n n C37 H32 8W5 sing 67 n n C37 H33 8W5 sing 68 n n C37 H34 8W5 sing 69 n n # _atom_sites.entry_id 5NFP _atom_sites.fract_transf_matrix[1][1] 0.011906 _atom_sites.fract_transf_matrix[1][2] 0.006874 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009426 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CPS A 1 801 100 CPS CPS . D 4 EDO A 1 802 101 EDO EDO . E 5 GOL A 1 803 102 GOL GOL . F 6 8W5 A 1 804 1 8W5 INH . G 7 HOH A 1 901 9 HOH HOH . G 7 HOH A 2 902 32 HOH HOH . G 7 HOH A 3 903 29 HOH HOH . G 7 HOH A 4 904 154 HOH HOH . G 7 HOH A 5 905 26 HOH HOH . G 7 HOH A 6 906 18 HOH HOH . G 7 HOH A 7 907 56 HOH HOH . G 7 HOH A 8 908 7 HOH HOH . G 7 HOH A 9 909 58 HOH HOH . G 7 HOH A 10 910 155 HOH HOH . G 7 HOH A 11 911 16 HOH HOH . G 7 HOH A 12 912 82 HOH HOH . G 7 HOH A 13 913 114 HOH HOH . G 7 HOH A 14 914 23 HOH HOH . G 7 HOH A 15 915 11 HOH HOH . G 7 HOH A 16 916 165 HOH HOH . G 7 HOH A 17 917 129 HOH HOH . G 7 HOH A 18 918 17 HOH HOH . G 7 HOH A 19 919 35 HOH HOH . G 7 HOH A 20 920 14 HOH HOH . G 7 HOH A 21 921 107 HOH HOH . G 7 HOH A 22 922 59 HOH HOH . G 7 HOH A 23 923 63 HOH HOH . G 7 HOH A 24 924 40 HOH HOH . G 7 HOH A 25 925 147 HOH HOH . G 7 HOH A 26 926 161 HOH HOH . G 7 HOH A 27 927 4 HOH HOH . G 7 HOH A 28 928 5 HOH HOH . G 7 HOH A 29 929 27 HOH HOH . G 7 HOH A 30 930 47 HOH HOH . G 7 HOH A 31 931 96 HOH HOH . G 7 HOH A 32 932 50 HOH HOH . G 7 HOH A 33 933 143 HOH HOH . G 7 HOH A 34 934 86 HOH HOH . G 7 HOH A 35 935 36 HOH HOH . G 7 HOH A 36 936 37 HOH HOH . G 7 HOH A 37 937 74 HOH HOH . G 7 HOH A 38 938 12 HOH HOH . G 7 HOH A 39 939 116 HOH HOH . G 7 HOH A 40 940 81 HOH HOH . G 7 HOH A 41 941 46 HOH HOH . G 7 HOH A 42 942 179 HOH HOH . G 7 HOH A 43 943 177 HOH HOH . G 7 HOH A 44 944 175 HOH HOH . G 7 HOH A 45 945 64 HOH HOH . G 7 HOH A 46 946 19 HOH HOH . G 7 HOH A 47 947 21 HOH HOH . G 7 HOH A 48 948 65 HOH HOH . G 7 HOH A 49 949 99 HOH HOH . G 7 HOH A 50 950 20 HOH HOH . G 7 HOH A 51 951 180 HOH HOH . G 7 HOH A 52 952 172 HOH HOH . G 7 HOH A 53 953 66 HOH HOH . G 7 HOH A 54 954 128 HOH HOH . G 7 HOH A 55 955 10 HOH HOH . G 7 HOH A 56 956 104 HOH HOH . G 7 HOH A 57 957 28 HOH HOH . G 7 HOH A 58 958 61 HOH HOH . G 7 HOH A 59 959 138 HOH HOH . G 7 HOH A 60 960 164 HOH HOH . G 7 HOH A 61 961 13 HOH HOH . G 7 HOH A 62 962 146 HOH HOH . G 7 HOH A 63 963 140 HOH HOH . G 7 HOH A 64 964 8 HOH HOH . G 7 HOH A 65 965 57 HOH HOH . G 7 HOH A 66 966 39 HOH HOH . G 7 HOH A 67 967 142 HOH HOH . G 7 HOH A 68 968 125 HOH HOH . G 7 HOH A 69 969 112 HOH HOH . G 7 HOH A 70 970 2 HOH HOH . G 7 HOH A 71 971 130 HOH HOH . G 7 HOH A 72 972 93 HOH HOH . G 7 HOH A 73 973 149 HOH HOH . G 7 HOH A 74 974 127 HOH HOH . G 7 HOH A 75 975 42 HOH HOH . G 7 HOH A 76 976 52 HOH HOH . G 7 HOH A 77 977 150 HOH HOH . G 7 HOH A 78 978 136 HOH HOH . G 7 HOH A 79 979 15 HOH HOH . G 7 HOH A 80 980 95 HOH HOH . G 7 HOH A 81 981 62 HOH HOH . G 7 HOH A 82 982 106 HOH HOH . G 7 HOH A 83 983 170 HOH HOH . G 7 HOH A 84 984 123 HOH HOH . G 7 HOH A 85 985 137 HOH HOH . G 7 HOH A 86 986 182 HOH HOH . G 7 HOH A 87 987 24 HOH HOH . G 7 HOH A 88 988 133 HOH HOH . G 7 HOH A 89 989 135 HOH HOH . G 7 HOH A 90 990 117 HOH HOH . G 7 HOH A 91 991 55 HOH HOH . G 7 HOH A 92 992 85 HOH HOH . G 7 HOH A 93 993 167 HOH HOH . G 7 HOH A 94 994 78 HOH HOH . G 7 HOH A 95 995 145 HOH HOH . G 7 HOH A 96 996 31 HOH HOH . G 7 HOH A 97 997 132 HOH HOH . G 7 HOH A 98 998 178 HOH HOH . G 7 HOH A 99 999 176 HOH HOH . G 7 HOH A 100 1000 33 HOH HOH . G 7 HOH A 101 1001 67 HOH HOH . G 7 HOH A 102 1002 134 HOH HOH . G 7 HOH A 103 1003 174 HOH HOH . G 7 HOH A 104 1004 98 HOH HOH . G 7 HOH A 105 1005 181 HOH HOH . G 7 HOH A 106 1006 94 HOH HOH . G 7 HOH A 107 1007 126 HOH HOH . G 7 HOH A 108 1008 139 HOH HOH . G 7 HOH A 109 1009 173 HOH HOH . G 7 HOH A 110 1010 71 HOH HOH . G 7 HOH A 111 1011 169 HOH HOH . G 7 HOH A 112 1012 158 HOH HOH . G 7 HOH A 113 1013 68 HOH HOH . G 7 HOH A 114 1014 131 HOH HOH . G 7 HOH A 115 1015 122 HOH HOH . G 7 HOH A 116 1016 168 HOH HOH . G 7 HOH A 117 1017 115 HOH HOH . G 7 HOH A 118 1018 141 HOH HOH . G 7 HOH A 119 1019 113 HOH HOH . G 7 HOH A 120 1020 148 HOH HOH . G 7 HOH A 121 1021 171 HOH HOH . G 7 HOH A 122 1022 166 HOH HOH . G 7 HOH A 123 1023 144 HOH HOH . G 7 HOH A 124 1024 118 HOH HOH . G 7 HOH A 125 1025 119 HOH HOH . G 7 HOH A 126 1026 160 HOH HOH . G 7 HOH A 127 1027 121 HOH HOH . G 7 HOH A 128 1028 120 HOH HOH . G 7 HOH A 129 1029 157 HOH HOH . G 7 HOH A 130 1030 162 HOH HOH . G 7 HOH A 131 1031 163 HOH HOH . G 7 HOH A 132 1032 159 HOH HOH . G 7 HOH A 133 1033 124 HOH HOH . H 7 HOH B 1 801 69 HOH HOH . H 7 HOH B 2 802 3 HOH HOH . H 7 HOH B 3 803 43 HOH HOH . H 7 HOH B 4 804 1 HOH HOH . H 7 HOH B 5 805 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8W5 . . . F 6 -1.426 -44.86 -4.011 1 44.74 ? C1 8W5 804 A 1 HETATM 2 C C2 8W5 . . . F 6 -0.98 -43.59 -3.277 1 44.76 ? C2 8W5 804 A 1 HETATM 3 C C3 8W5 . . . F 6 -1.961 -42.478 -3.639 1 41.86 ? C3 8W5 804 A 1 HETATM 4 C C7 8W5 . . . F 6 -2.148 -38.93 -3.505 1 33.18 ? C7 8W5 804 A 1 HETATM 5 C C9 8W5 . . . F 6 -2.682 -38.471 -4.899 1 31.55 ? C9 8W5 804 A 1 HETATM 6 C C10 8W5 . . . F 6 -1.566 -38.982 -5.849 1 31.72 ? C10 8W5 804 A 1 HETATM 7 C C12 8W5 . . . F 6 -1.532 -38.569 -7.333 1 29.85 ? C12 8W5 804 A 1 HETATM 8 C C14 8W5 . . . F 6 -2.862 -38.965 -8.022 1 29 ? C14 8W5 804 A 1 HETATM 9 C C15 8W5 . . . F 6 -2.853 -38.713 -9.555 1 25.76 ? C15 8W5 804 A 1 HETATM 10 C C16 8W5 . . . F 6 -1.575 -39.333 -10.159 1 27.93 ? C16 8W5 804 A 1 HETATM 11 C C20 8W5 . . . F 6 0.833 -40.508 -11.236 1 28.25 ? C20 8W5 804 A 1 HETATM 12 C C21 8W5 . . . F 6 0.929 -39.68 -10.204 1 28.9 ? C21 8W5 804 A 1 HETATM 13 C C22 8W5 . . . F 6 -0.227 -38.977 -9.549 1 28.68 ? C22 8W5 804 A 1 HETATM 14 C C27 8W5 . . . F 6 0.892 -39.396 -5.727 1 28.95 ? C27 8W5 804 A 1 HETATM 15 C C31 8W5 . . . F 6 0.251 -38.48 -2.523 1 31.26 ? C31 8W5 804 A 1 HETATM 16 C C33 8W5 . . . F 6 1.631 -39.026 -2.25 1 28.91 ? C33 8W5 804 A 1 HETATM 17 C C35 8W5 . . . F 6 0.05 -37.083 -5.04 1 26.76 ? C35 8W5 804 A 1 HETATM 18 C C4 8W5 . . . F 6 -1.627 -41.148 -2.95 1 38.77 ? C4 8W5 804 A 1 HETATM 19 O O6 8W5 . . . F 6 -2.702 -40.232 -3.254 1 34.1 ? O6 8W5 804 A 1 HETATM 20 C C17 8W5 . . . F 6 -1.692 -40.17 -11.193 1 30.47 ? C17 8W5 804 A 1 HETATM 21 C C18 8W5 . . . F 6 -0.497 -40.812 -11.797 1 33.12 ? C18 8W5 804 A 1 HETATM 22 O O19 8W5 . . . F 6 -0.598 -41.589 -12.743 1 37.46 ? O19 8W5 804 A 1 HETATM 23 C C23 8W5 . . . F 6 -0.339 -39.326 -8.026 1 30.35 ? C23 8W5 804 A 1 HETATM 24 C C25 8W5 . . . F 6 1.019 -39.174 -7.256 1 28.23 ? C25 8W5 804 A 1 HETATM 25 C C28 8W5 . . . F 6 -0.252 -38.62 -5.058 1 30.06 ? C28 8W5 804 A 1 HETATM 26 C C29 8W5 . . . F 6 -0.598 -39.129 -3.623 1 31.99 ? C29 8W5 804 A 1 HETATM 27 O O30 8W5 . . . F 6 -0.439 -40.565 -3.54 1 36.07 ? O30 8W5 804 A 1 HETATM 28 O O32 8W5 . . . F 6 -0.139 -37.536 -1.866 1 31.69 ? O32 8W5 804 A 1 HETATM 29 O O34 8W5 . . . F 6 2.408 -38.096 -1.509 1 29.41 ? O34 8W5 804 A 1 HETATM 30 O O36 8W5 . . . F 6 1.673 -37.91 -7.481 1 27.53 ? O36 8W5 804 A 1 HETATM 31 C C37 8W5 . . . F 6 0.025 -37.474 -9.841 1 26.69 ? C37 8W5 804 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #