data_5NFQ # _model_server_result.job_id dN0ZGyDVt13gLy_TvpNZSg _model_server_result.datetime_utc '2024-12-31 09:22:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nfq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5NFQ # _exptl.entry_id 5NFQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NFQ _cell.length_a 41.2 _cell.length_b 84.18 _cell.length_c 157.45 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NFQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5NFQ _atom_sites.fract_transf_matrix[1][1] 0.024272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011879 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG A 1 401 1 PEG PEG . C 2 PEG A 1 402 3 PEG PEG . D 3 EDO A 1 403 1 EDO EDO . E 3 EDO A 1 404 4 EDO EDO . F 3 EDO A 1 405 6 EDO EDO . G 3 EDO A 1 406 8 EDO EDO . H 3 EDO A 1 407 10 EDO EDO . I 3 EDO A 1 408 13 EDO EDO . J 3 EDO A 1 409 14 EDO EDO . K 3 EDO A 1 410 17 EDO EDO . L 3 EDO A 1 411 24 EDO EDO . M 4 PGE A 1 412 1 PGE PGE . N 4 PGE A 1 413 2 PGE PGE . O 5 IMD A 1 414 1 IMD IMD . P 6 HOH A 1 501 392 HOH HOH . P 6 HOH A 2 502 397 HOH HOH . P 6 HOH A 3 503 402 HOH HOH . P 6 HOH A 4 504 377 HOH HOH . P 6 HOH A 5 505 208 HOH HOH . P 6 HOH A 6 506 316 HOH HOH . P 6 HOH A 7 507 59 HOH HOH . P 6 HOH A 8 508 379 HOH HOH . P 6 HOH A 9 509 300 HOH HOH . P 6 HOH A 10 510 124 HOH HOH . P 6 HOH A 11 511 43 HOH HOH . P 6 HOH A 12 512 334 HOH HOH . P 6 HOH A 13 513 297 HOH HOH . P 6 HOH A 14 514 101 HOH HOH . P 6 HOH A 15 515 271 HOH HOH . P 6 HOH A 16 516 82 HOH HOH . P 6 HOH A 17 517 175 HOH HOH . P 6 HOH A 18 518 99 HOH HOH . P 6 HOH A 19 519 184 HOH HOH . P 6 HOH A 20 520 119 HOH HOH . P 6 HOH A 21 521 103 HOH HOH . P 6 HOH A 22 522 11 HOH HOH . P 6 HOH A 23 523 157 HOH HOH . P 6 HOH A 24 524 390 HOH HOH . P 6 HOH A 25 525 131 HOH HOH . P 6 HOH A 26 526 105 HOH HOH . P 6 HOH A 27 527 263 HOH HOH . P 6 HOH A 28 528 288 HOH HOH . P 6 HOH A 29 529 35 HOH HOH . P 6 HOH A 30 530 247 HOH HOH . P 6 HOH A 31 531 33 HOH HOH . P 6 HOH A 32 532 381 HOH HOH . P 6 HOH A 33 533 189 HOH HOH . P 6 HOH A 34 534 143 HOH HOH . P 6 HOH A 35 535 93 HOH HOH . P 6 HOH A 36 536 267 HOH HOH . P 6 HOH A 37 537 241 HOH HOH . P 6 HOH A 38 538 41 HOH HOH . P 6 HOH A 39 539 301 HOH HOH . P 6 HOH A 40 540 229 HOH HOH . P 6 HOH A 41 541 384 HOH HOH . P 6 HOH A 42 542 55 HOH HOH . P 6 HOH A 43 543 223 HOH HOH . P 6 HOH A 44 544 290 HOH HOH . P 6 HOH A 45 545 12 HOH HOH . P 6 HOH A 46 546 50 HOH HOH . P 6 HOH A 47 547 27 HOH HOH . P 6 HOH A 48 548 139 HOH HOH . P 6 HOH A 49 549 312 HOH HOH . P 6 HOH A 50 550 310 HOH HOH . P 6 HOH A 51 551 118 HOH HOH . P 6 HOH A 52 552 36 HOH HOH . P 6 HOH A 53 553 238 HOH HOH . P 6 HOH A 54 554 194 HOH HOH . P 6 HOH A 55 555 77 HOH HOH . P 6 HOH A 56 556 242 HOH HOH . P 6 HOH A 57 557 236 HOH HOH . P 6 HOH A 58 558 62 HOH HOH . P 6 HOH A 59 559 275 HOH HOH . P 6 HOH A 60 560 21 HOH HOH . P 6 HOH A 61 561 252 HOH HOH . P 6 HOH A 62 562 260 HOH HOH . P 6 HOH A 63 563 374 HOH HOH . P 6 HOH A 64 564 3 HOH HOH . P 6 HOH A 65 565 53 HOH HOH . P 6 HOH A 66 566 292 HOH HOH . P 6 HOH A 67 567 246 HOH HOH . P 6 HOH A 68 568 163 HOH HOH . P 6 HOH A 69 569 97 HOH HOH . P 6 HOH A 70 570 42 HOH HOH . P 6 HOH A 71 571 63 HOH HOH . P 6 HOH A 72 572 347 HOH HOH . P 6 HOH A 73 573 337 HOH HOH . P 6 HOH A 74 574 253 HOH HOH . P 6 HOH A 75 575 327 HOH HOH . P 6 HOH A 76 576 92 HOH HOH . P 6 HOH A 77 577 52 HOH HOH . P 6 HOH A 78 578 70 HOH HOH . P 6 HOH A 79 579 154 HOH HOH . P 6 HOH A 80 580 51 HOH HOH . P 6 HOH A 81 581 32 HOH HOH . P 6 HOH A 82 582 389 HOH HOH . P 6 HOH A 83 583 37 HOH HOH . P 6 HOH A 84 584 232 HOH HOH . P 6 HOH A 85 585 142 HOH HOH . P 6 HOH A 86 586 6 HOH HOH . P 6 HOH A 87 587 328 HOH HOH . P 6 HOH A 88 588 7 HOH HOH . P 6 HOH A 89 589 136 HOH HOH . P 6 HOH A 90 590 47 HOH HOH . P 6 HOH A 91 591 291 HOH HOH . P 6 HOH A 92 592 104 HOH HOH . P 6 HOH A 93 593 26 HOH HOH . P 6 HOH A 94 594 179 HOH HOH . P 6 HOH A 95 595 10 HOH HOH . P 6 HOH A 96 596 16 HOH HOH . P 6 HOH A 97 597 98 HOH HOH . P 6 HOH A 98 598 202 HOH HOH . P 6 HOH A 99 599 147 HOH HOH . P 6 HOH A 100 600 371 HOH HOH . P 6 HOH A 101 601 205 HOH HOH . P 6 HOH A 102 602 40 HOH HOH . P 6 HOH A 103 603 391 HOH HOH . P 6 HOH A 104 604 287 HOH HOH . P 6 HOH A 105 605 331 HOH HOH . P 6 HOH A 106 606 86 HOH HOH . P 6 HOH A 107 607 362 HOH HOH . P 6 HOH A 108 608 308 HOH HOH . P 6 HOH A 109 609 5 HOH HOH . P 6 HOH A 110 610 351 HOH HOH . P 6 HOH A 111 611 57 HOH HOH . P 6 HOH A 112 612 173 HOH HOH . P 6 HOH A 113 613 20 HOH HOH . P 6 HOH A 114 614 29 HOH HOH . P 6 HOH A 115 615 125 HOH HOH . P 6 HOH A 116 616 369 HOH HOH . P 6 HOH A 117 617 1 HOH HOH . P 6 HOH A 118 618 158 HOH HOH . P 6 HOH A 119 619 289 HOH HOH . P 6 HOH A 120 620 176 HOH HOH . P 6 HOH A 121 621 126 HOH HOH . P 6 HOH A 122 622 361 HOH HOH . P 6 HOH A 123 623 268 HOH HOH . P 6 HOH A 124 624 352 HOH HOH . P 6 HOH A 125 625 69 HOH HOH . P 6 HOH A 126 626 149 HOH HOH . P 6 HOH A 127 627 9 HOH HOH . P 6 HOH A 128 628 332 HOH HOH . P 6 HOH A 129 629 8 HOH HOH . P 6 HOH A 130 630 138 HOH HOH . P 6 HOH A 131 631 30 HOH HOH . P 6 HOH A 132 632 67 HOH HOH . P 6 HOH A 133 633 68 HOH HOH . P 6 HOH A 134 634 335 HOH HOH . P 6 HOH A 135 635 76 HOH HOH . P 6 HOH A 136 636 166 HOH HOH . P 6 HOH A 137 637 307 HOH HOH . P 6 HOH A 138 638 210 HOH HOH . P 6 HOH A 139 639 58 HOH HOH . P 6 HOH A 140 640 66 HOH HOH . P 6 HOH A 141 641 2 HOH HOH . P 6 HOH A 142 642 13 HOH HOH . P 6 HOH A 143 643 148 HOH HOH . P 6 HOH A 144 644 144 HOH HOH . P 6 HOH A 145 645 284 HOH HOH . P 6 HOH A 146 646 382 HOH HOH . P 6 HOH A 147 647 84 HOH HOH . P 6 HOH A 148 648 56 HOH HOH . P 6 HOH A 149 649 19 HOH HOH . P 6 HOH A 150 650 90 HOH HOH . P 6 HOH A 151 651 28 HOH HOH . P 6 HOH A 152 652 14 HOH HOH . P 6 HOH A 153 653 278 HOH HOH . P 6 HOH A 154 654 4 HOH HOH . P 6 HOH A 155 655 64 HOH HOH . P 6 HOH A 156 656 319 HOH HOH . P 6 HOH A 157 657 245 HOH HOH . P 6 HOH A 158 658 198 HOH HOH . P 6 HOH A 159 659 38 HOH HOH . P 6 HOH A 160 660 294 HOH HOH . P 6 HOH A 161 661 279 HOH HOH . P 6 HOH A 162 662 129 HOH HOH . P 6 HOH A 163 663 54 HOH HOH . P 6 HOH A 164 664 106 HOH HOH . P 6 HOH A 165 665 121 HOH HOH . P 6 HOH A 166 666 23 HOH HOH . P 6 HOH A 167 667 269 HOH HOH . P 6 HOH A 168 668 295 HOH HOH . P 6 HOH A 169 669 213 HOH HOH . P 6 HOH A 170 670 48 HOH HOH . P 6 HOH A 171 671 156 HOH HOH . P 6 HOH A 172 672 49 HOH HOH . P 6 HOH A 173 673 83 HOH HOH . P 6 HOH A 174 674 31 HOH HOH . P 6 HOH A 175 675 17 HOH HOH . P 6 HOH A 176 676 71 HOH HOH . P 6 HOH A 177 677 188 HOH HOH . P 6 HOH A 178 678 394 HOH HOH . P 6 HOH A 179 679 39 HOH HOH . P 6 HOH A 180 680 368 HOH HOH . P 6 HOH A 181 681 170 HOH HOH . P 6 HOH A 182 682 115 HOH HOH . P 6 HOH A 183 683 120 HOH HOH . P 6 HOH A 184 684 79 HOH HOH . P 6 HOH A 185 685 326 HOH HOH . P 6 HOH A 186 686 196 HOH HOH . P 6 HOH A 187 687 350 HOH HOH . P 6 HOH A 188 688 34 HOH HOH . P 6 HOH A 189 689 137 HOH HOH . P 6 HOH A 190 690 75 HOH HOH . P 6 HOH A 191 691 102 HOH HOH . P 6 HOH A 192 692 24 HOH HOH . P 6 HOH A 193 693 306 HOH HOH . P 6 HOH A 194 694 91 HOH HOH . P 6 HOH A 195 695 218 HOH HOH . P 6 HOH A 196 696 286 HOH HOH . P 6 HOH A 197 697 257 HOH HOH . P 6 HOH A 198 698 370 HOH HOH . P 6 HOH A 199 699 81 HOH HOH . P 6 HOH A 200 700 85 HOH HOH . P 6 HOH A 201 701 272 HOH HOH . P 6 HOH A 202 702 277 HOH HOH . P 6 HOH A 203 703 207 HOH HOH . P 6 HOH A 204 704 305 HOH HOH . P 6 HOH A 205 705 226 HOH HOH . P 6 HOH A 206 706 73 HOH HOH . P 6 HOH A 207 707 349 HOH HOH . P 6 HOH A 208 708 18 HOH HOH . P 6 HOH A 209 709 200 HOH HOH . P 6 HOH A 210 710 165 HOH HOH . P 6 HOH A 211 711 15 HOH HOH . P 6 HOH A 212 712 317 HOH HOH . P 6 HOH A 213 713 339 HOH HOH . P 6 HOH A 214 714 342 HOH HOH . P 6 HOH A 215 715 261 HOH HOH . P 6 HOH A 216 716 96 HOH HOH . P 6 HOH A 217 717 197 HOH HOH . P 6 HOH A 218 718 192 HOH HOH . P 6 HOH A 219 719 134 HOH HOH . P 6 HOH A 220 720 266 HOH HOH . P 6 HOH A 221 721 78 HOH HOH . P 6 HOH A 222 722 123 HOH HOH . P 6 HOH A 223 723 225 HOH HOH . P 6 HOH A 224 724 80 HOH HOH . P 6 HOH A 225 725 87 HOH HOH . P 6 HOH A 226 726 367 HOH HOH . P 6 HOH A 227 727 171 HOH HOH . P 6 HOH A 228 728 216 HOH HOH . P 6 HOH A 229 729 302 HOH HOH . P 6 HOH A 230 730 273 HOH HOH . P 6 HOH A 231 731 220 HOH HOH . P 6 HOH A 232 732 111 HOH HOH . P 6 HOH A 233 733 254 HOH HOH . P 6 HOH A 234 734 167 HOH HOH . P 6 HOH A 235 735 233 HOH HOH . P 6 HOH A 236 736 330 HOH HOH . P 6 HOH A 237 737 127 HOH HOH . P 6 HOH A 238 738 309 HOH HOH . P 6 HOH A 239 739 74 HOH HOH . P 6 HOH A 240 740 100 HOH HOH . P 6 HOH A 241 741 343 HOH HOH . P 6 HOH A 242 742 353 HOH HOH . P 6 HOH A 243 743 293 HOH HOH . P 6 HOH A 244 744 237 HOH HOH . P 6 HOH A 245 745 107 HOH HOH . P 6 HOH A 246 746 224 HOH HOH . P 6 HOH A 247 747 303 HOH HOH . P 6 HOH A 248 748 46 HOH HOH . P 6 HOH A 249 749 376 HOH HOH . P 6 HOH A 250 750 355 HOH HOH . P 6 HOH A 251 751 365 HOH HOH . P 6 HOH A 252 752 380 HOH HOH . P 6 HOH A 253 753 234 HOH HOH . P 6 HOH A 254 754 140 HOH HOH . P 6 HOH A 255 755 396 HOH HOH . P 6 HOH A 256 756 150 HOH HOH . P 6 HOH A 257 757 249 HOH HOH . P 6 HOH A 258 758 128 HOH HOH . P 6 HOH A 259 759 318 HOH HOH . P 6 HOH A 260 760 314 HOH HOH . P 6 HOH A 261 761 110 HOH HOH . P 6 HOH A 262 762 399 HOH HOH . P 6 HOH A 263 763 276 HOH HOH . P 6 HOH A 264 764 363 HOH HOH . P 6 HOH A 265 765 373 HOH HOH . P 6 HOH A 266 766 400 HOH HOH . P 6 HOH A 267 767 183 HOH HOH . P 6 HOH A 268 768 89 HOH HOH . P 6 HOH A 269 769 354 HOH HOH . P 6 HOH A 270 770 114 HOH HOH . P 6 HOH A 271 771 141 HOH HOH . P 6 HOH A 272 772 221 HOH HOH . P 6 HOH A 273 773 187 HOH HOH . P 6 HOH A 274 774 333 HOH HOH . P 6 HOH A 275 775 386 HOH HOH . P 6 HOH A 276 776 169 HOH HOH . P 6 HOH A 277 777 243 HOH HOH . P 6 HOH A 278 778 383 HOH HOH . P 6 HOH A 279 779 325 HOH HOH . P 6 HOH A 280 780 145 HOH HOH . P 6 HOH A 281 781 199 HOH HOH . P 6 HOH A 282 782 395 HOH HOH . P 6 HOH A 283 783 117 HOH HOH . P 6 HOH A 284 784 255 HOH HOH . P 6 HOH A 285 785 270 HOH HOH . P 6 HOH A 286 786 315 HOH HOH . P 6 HOH A 287 787 348 HOH HOH . P 6 HOH A 288 788 108 HOH HOH . P 6 HOH A 289 789 385 HOH HOH . P 6 HOH A 290 790 231 HOH HOH . P 6 HOH A 291 791 146 HOH HOH . P 6 HOH A 292 792 393 HOH HOH . P 6 HOH A 293 793 388 HOH HOH . P 6 HOH A 294 794 311 HOH HOH . P 6 HOH A 295 795 109 HOH HOH . P 6 HOH A 296 796 375 HOH HOH . P 6 HOH A 297 797 204 HOH HOH . P 6 HOH A 298 798 256 HOH HOH . P 6 HOH A 299 799 356 HOH HOH . P 6 HOH A 300 800 296 HOH HOH . P 6 HOH A 301 801 259 HOH HOH . P 6 HOH A 302 802 240 HOH HOH . P 6 HOH A 303 803 401 HOH HOH . P 6 HOH A 304 804 324 HOH HOH . P 6 HOH A 305 805 239 HOH HOH . P 6 HOH A 306 806 298 HOH HOH . P 6 HOH A 307 807 160 HOH HOH . P 6 HOH A 308 808 174 HOH HOH . P 6 HOH A 309 809 262 HOH HOH . P 6 HOH A 310 810 357 HOH HOH . P 6 HOH A 311 811 282 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 3 13.196 15.557 46.858 1 25.76 ? C1 EDO 405 A 1 HETATM 2 O O1 EDO . . . F 3 14.605 15.357 47.01 1 30.9 ? O1 EDO 405 A 1 HETATM 3 C C2 EDO . . . F 3 12.835 16.669 45.901 1 36.05 ? C2 EDO 405 A 1 HETATM 4 O O2 EDO . . . F 3 11.772 17.424 46.483 1 43.24 ? O2 EDO 405 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #