data_5NFR # _model_server_result.job_id hORQL9Jjtxdw80oWa3iI-Q _model_server_result.datetime_utc '2025-07-01 21:55:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nfr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":401}' # _entry.id 5NFR # _exptl.entry_id 5NFR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 103.77 _cell.angle_beta 101.46 _cell.angle_gamma 94.93 _cell.entry_id 5NFR _cell.length_a 72.018 _cell.length_b 152.689 _cell.length_c 158.393 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NFR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 DA N N ? 2 EA N N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 5NFR _atom_sites.fract_transf_matrix[1][1] 0.013885 _atom_sites.fract_transf_matrix[1][2] 0.001197 _atom_sites.fract_transf_matrix[1][3] 0.003241 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006574 _atom_sites.fract_transf_matrix[2][3] 0.001779 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 2 CIT A 1 401 999 CIT CIT . R 2 CIT B 1 401 999 CIT CIT . S 2 CIT C 1 401 999 CIT CIT . T 2 CIT D 1 401 999 CIT CIT . U 2 CIT E 1 401 999 CIT CIT . V 2 CIT F 1 401 999 CIT CIT . W 2 CIT H 1 401 999 CIT CIT . X 2 CIT I 1 401 999 CIT CIT . Y 2 CIT J 1 401 999 CIT CIT . Z 2 CIT K 1 401 999 CIT CIT . AA 2 CIT L 1 401 999 CIT CIT . BA 2 CIT M 1 401 999 CIT CIT . CA 2 CIT N 1 401 999 CIT CIT . DA 2 CIT O 1 401 999 CIT CIT . EA 2 CIT P 1 401 999 CIT CIT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . Y 2 49.449 40.243 16.785 1 20.18 ? C1 CIT 401 J 1 HETATM 2 O O1 CIT . . . Y 2 49.149 39.564 15.678 1 21.67 ? O1 CIT 401 J 1 HETATM 3 O O2 CIT . . . Y 2 49.086 41.418 16.852 1 17.23 ? O2 CIT 401 J 1 HETATM 4 C C2 CIT . . . Y 2 50.185 39.684 17.842 1 20.63 ? C2 CIT 401 J 1 HETATM 5 C C3 CIT . . . Y 2 49.726 39.968 19.355 1 21.47 ? C3 CIT 401 J 1 HETATM 6 O O7 CIT . . . Y 2 50.782 39.566 20.275 1 21.55 ? O7 CIT 401 J 1 HETATM 7 C C4 CIT . . . Y 2 48.525 39.115 19.683 1 22.39 ? C4 CIT 401 J 1 HETATM 8 C C5 CIT . . . Y 2 49.071 37.698 19.495 1 25.77 ? C5 CIT 401 J 1 HETATM 9 O O3 CIT . . . Y 2 48.955 36.957 18.404 1 26.16 ? O3 CIT 401 J 1 HETATM 10 O O4 CIT . . . Y 2 49.789 37.298 20.45 1 29.18 ? O4 CIT 401 J 1 HETATM 11 C C6 CIT . . . Y 2 49.571 41.47 19.702 1 20.19 ? C6 CIT 401 J 1 HETATM 12 O O5 CIT . . . Y 2 48.466 42.066 19.494 1 19.1 ? O5 CIT 401 J 1 HETATM 13 O O6 CIT . . . Y 2 50.561 42.224 19.779 1 19.26 ? O6 CIT 401 J 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 54 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #