data_5NFS # _model_server_result.job_id ay1gybqAtIvzfpXeALfmbQ _model_server_result.datetime_utc '2025-03-06 03:28:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nfs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5NFS # _exptl.entry_id 5NFS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 568.663 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (S)-N-benzyl-3-((S)-2-cinnamamido-3-phenylpropanamido)-2-oxo-4-((S)-2-oxopyrrolidin-3-yl)butanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.44 _cell.angle_gamma 90 _cell.entry_id 5NFS _cell.length_a 77.657 _cell.length_b 64.354 _cell.length_c 39.477 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NFS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 148 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 147 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C57 _struct_conn.ptnr2_label_comp_id D03 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id D03 _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.818 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C33 H36 N4 O5' _chem_comp.formula_weight 568.663 _chem_comp.id D03 _chem_comp.mon_nstd_flag . _chem_comp.name (S)-N-benzyl-3-((S)-2-cinnamamido-3-phenylpropanamido)-2-oxo-4-((S)-2-oxopyrrolidin-3-yl)butanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C51 C54 D03 sing 83 n n C51 N49 D03 sing 84 n n C54 C45 D03 sing 85 n n N49 C47 D03 sing 86 n n C12 C14 D03 doub 87 n y C12 C10 D03 sing 88 n y C14 C16 D03 sing 89 n y C10 C08 D03 doub 90 n y C16 C07 D03 doub 91 n y O58 C57 D03 sing 92 n n N68 C70 D03 sing 93 n n N68 C66 D03 sing 94 n n C47 C45 D03 sing 95 n n C47 O48 D03 doub 96 n n C70 C73 D03 sing 97 n n C45 C42 D03 sing 98 n n C74 C73 D03 doub 99 n y C74 C82 D03 sing 100 n y C08 C07 D03 sing 101 n y C07 C05 D03 sing 102 n n C42 C40 D03 sing 103 n n O37 C36 D03 doub 104 n n C73 C76 D03 sing 105 n y C40 C57 D03 sing 106 n n C40 N38 D03 sing 107 n n C82 C80 D03 doub 108 n y C57 C66 D03 sing 109 n n C66 O67 D03 doub 110 n n C05 C03 D03 doub 111 e n C76 C78 D03 doub 112 n y C80 C78 D03 sing 113 n y C36 N38 D03 sing 114 n n C36 C20 D03 sing 115 n n C03 C02 D03 sing 116 n n C02 O01 D03 doub 117 n n C02 N18 D03 sing 118 n n N18 C20 D03 sing 119 n n C20 C22 D03 sing 120 n n C22 C25 D03 sing 121 n n C25 C26 D03 doub 122 n y C25 C34 D03 sing 123 n y C26 C28 D03 sing 124 n y C34 C32 D03 doub 125 n y C28 C30 D03 doub 126 n y C32 C30 D03 sing 127 n y C03 H1 D03 sing 128 n n C05 H2 D03 sing 129 n n C16 H3 D03 sing 130 n n C14 H4 D03 sing 131 n n C12 H5 D03 sing 132 n n C10 H6 D03 sing 133 n n C08 H7 D03 sing 134 n n N18 H8 D03 sing 135 n n C20 H9 D03 sing 136 n n C22 H10 D03 sing 137 n n C22 H11 D03 sing 138 n n C34 H12 D03 sing 139 n n C32 H13 D03 sing 140 n n C30 H14 D03 sing 141 n n C28 H15 D03 sing 142 n n C26 H16 D03 sing 143 n n N38 H17 D03 sing 144 n n C40 H18 D03 sing 145 n n C42 H19 D03 sing 146 n n C42 H20 D03 sing 147 n n C45 H21 D03 sing 148 n n N49 H22 D03 sing 149 n n C51 H23 D03 sing 150 n n C51 H24 D03 sing 151 n n C54 H25 D03 sing 152 n n C54 H26 D03 sing 153 n n C57 H27 D03 sing 154 n n O58 H28 D03 sing 155 n n N68 H29 D03 sing 156 n n C70 H30 D03 sing 157 n n C70 H31 D03 sing 158 n n C74 H32 D03 sing 159 n n C76 H33 D03 sing 160 n n C78 H34 D03 sing 161 n n C80 H35 D03 sing 162 n n C82 H36 D03 sing 163 n n # _atom_sites.entry_id 5NFS _atom_sites.fract_transf_matrix[1][1] 0.012877 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006126 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D03 A 1 201 1 D03 D03 . C 3 HOH A 1 301 34 HOH HOH . C 3 HOH A 2 302 113 HOH HOH . C 3 HOH A 3 303 114 HOH HOH . C 3 HOH A 4 304 74 HOH HOH . C 3 HOH A 5 305 83 HOH HOH . C 3 HOH A 6 306 55 HOH HOH . C 3 HOH A 7 307 84 HOH HOH . C 3 HOH A 8 308 3 HOH HOH . C 3 HOH A 9 309 77 HOH HOH . C 3 HOH A 10 310 80 HOH HOH . C 3 HOH A 11 311 10 HOH HOH . C 3 HOH A 12 312 52 HOH HOH . C 3 HOH A 13 313 26 HOH HOH . C 3 HOH A 14 314 7 HOH HOH . C 3 HOH A 15 315 56 HOH HOH . C 3 HOH A 16 316 137 HOH HOH . C 3 HOH A 17 317 29 HOH HOH . C 3 HOH A 18 318 8 HOH HOH . C 3 HOH A 19 319 58 HOH HOH . C 3 HOH A 20 320 11 HOH HOH . C 3 HOH A 21 321 9 HOH HOH . C 3 HOH A 22 322 41 HOH HOH . C 3 HOH A 23 323 99 HOH HOH . C 3 HOH A 24 324 20 HOH HOH . C 3 HOH A 25 325 32 HOH HOH . C 3 HOH A 26 326 62 HOH HOH . C 3 HOH A 27 327 64 HOH HOH . C 3 HOH A 28 328 54 HOH HOH . C 3 HOH A 29 329 40 HOH HOH . C 3 HOH A 30 330 31 HOH HOH . C 3 HOH A 31 331 22 HOH HOH . C 3 HOH A 32 332 71 HOH HOH . C 3 HOH A 33 333 48 HOH HOH . C 3 HOH A 34 334 17 HOH HOH . C 3 HOH A 35 335 39 HOH HOH . C 3 HOH A 36 336 33 HOH HOH . C 3 HOH A 37 337 25 HOH HOH . C 3 HOH A 38 338 60 HOH HOH . C 3 HOH A 39 339 6 HOH HOH . C 3 HOH A 40 340 23 HOH HOH . C 3 HOH A 41 341 27 HOH HOH . C 3 HOH A 42 342 37 HOH HOH . C 3 HOH A 43 343 19 HOH HOH . C 3 HOH A 44 344 13 HOH HOH . C 3 HOH A 45 345 24 HOH HOH . C 3 HOH A 46 346 5 HOH HOH . C 3 HOH A 47 347 87 HOH HOH . C 3 HOH A 48 348 38 HOH HOH . C 3 HOH A 49 349 16 HOH HOH . C 3 HOH A 50 350 85 HOH HOH . C 3 HOH A 51 351 15 HOH HOH . C 3 HOH A 52 352 18 HOH HOH . C 3 HOH A 53 353 65 HOH HOH . C 3 HOH A 54 354 28 HOH HOH . C 3 HOH A 55 355 111 HOH HOH . C 3 HOH A 56 356 14 HOH HOH . C 3 HOH A 57 357 136 HOH HOH . C 3 HOH A 58 358 12 HOH HOH . C 3 HOH A 59 359 35 HOH HOH . C 3 HOH A 60 360 57 HOH HOH . C 3 HOH A 61 361 43 HOH HOH . C 3 HOH A 62 362 46 HOH HOH . C 3 HOH A 63 363 61 HOH HOH . C 3 HOH A 64 364 1 HOH HOH . C 3 HOH A 65 365 138 HOH HOH . C 3 HOH A 66 366 73 HOH HOH . C 3 HOH A 67 367 30 HOH HOH . C 3 HOH A 68 368 140 HOH HOH . C 3 HOH A 69 369 115 HOH HOH . C 3 HOH A 70 370 51 HOH HOH . C 3 HOH A 71 371 69 HOH HOH . C 3 HOH A 72 372 36 HOH HOH . C 3 HOH A 73 373 50 HOH HOH . C 3 HOH A 74 374 2 HOH HOH . C 3 HOH A 75 375 67 HOH HOH . C 3 HOH A 76 376 82 HOH HOH . C 3 HOH A 77 377 70 HOH HOH . C 3 HOH A 78 378 118 HOH HOH . C 3 HOH A 79 379 72 HOH HOH . C 3 HOH A 80 380 135 HOH HOH . C 3 HOH A 81 381 66 HOH HOH . C 3 HOH A 82 382 124 HOH HOH . C 3 HOH A 83 383 86 HOH HOH . C 3 HOH A 84 384 139 HOH HOH . C 3 HOH A 85 385 134 HOH HOH . C 3 HOH A 86 386 47 HOH HOH . C 3 HOH A 87 387 53 HOH HOH . C 3 HOH A 88 388 112 HOH HOH . C 3 HOH A 89 389 42 HOH HOH . C 3 HOH A 90 390 123 HOH HOH . C 3 HOH A 91 391 141 HOH HOH . C 3 HOH A 92 392 68 HOH HOH . C 3 HOH A 93 393 44 HOH HOH . C 3 HOH A 94 394 132 HOH HOH . C 3 HOH A 95 395 45 HOH HOH . C 3 HOH A 96 396 59 HOH HOH . C 3 HOH A 97 397 119 HOH HOH . C 3 HOH A 98 398 116 HOH HOH . C 3 HOH A 99 399 133 HOH HOH . C 3 HOH A 100 400 102 HOH HOH . C 3 HOH A 101 401 101 HOH HOH . C 3 HOH A 102 402 93 HOH HOH . C 3 HOH A 103 403 91 HOH HOH . C 3 HOH A 104 404 107 HOH HOH . C 3 HOH A 105 405 122 HOH HOH . C 3 HOH A 106 406 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 D03 . . . B 2 -14.057 9.88 8.641 1 52.06 ? O01 D03 201 A 1 HETATM 2 C C02 D03 . . . B 2 -14.666 10.951 8.734 1 68.42 ? C02 D03 201 A 1 HETATM 3 C C03 D03 . . . B 2 -14.857 11.652 10.044 1 73.97 ? C03 D03 201 A 1 HETATM 4 C C05 D03 . . . B 2 -14.515 11.084 11.221 1 83.94 ? C05 D03 201 A 1 HETATM 5 C C07 D03 . . . B 2 -14.695 11.705 12.579 1 94.73 ? C07 D03 201 A 1 HETATM 6 C C16 D03 . . . B 2 -15.247 12.982 12.802 1 98.6 ? C16 D03 201 A 1 HETATM 7 C C14 D03 . . . B 2 -15.379 13.491 14.101 1 99.98 ? C14 D03 201 A 1 HETATM 8 C C12 D03 . . . B 2 -14.961 12.737 15.199 1 102.19 ? C12 D03 201 A 1 HETATM 9 C C10 D03 . . . B 2 -14.408 11.472 14.993 1 100.26 ? C10 D03 201 A 1 HETATM 10 C C08 D03 . . . B 2 -14.277 10.964 13.694 1 99.41 ? C08 D03 201 A 1 HETATM 11 N N18 D03 . . . B 2 -15.215 11.554 7.664 1 64.62 ? N18 D03 201 A 1 HETATM 12 C C20 D03 . . . B 2 -15.147 10.986 6.313 1 63.57 ? C20 D03 201 A 1 HETATM 13 C C22 D03 . . . B 2 -16.091 11.815 5.441 1 67.46 ? C22 D03 201 A 1 HETATM 14 C C25 D03 . . . B 2 -17.587 11.642 5.657 1 74.26 ? C25 D03 201 A 1 HETATM 15 C C34 D03 . . . B 2 -18.173 10.486 6.202 1 73.73 ? C34 D03 201 A 1 HETATM 16 C C32 D03 . . . B 2 -19.564 10.416 6.347 1 79.77 ? C32 D03 201 A 1 HETATM 17 C C30 D03 . . . B 2 -20.378 11.48 5.953 1 78.76 ? C30 D03 201 A 1 HETATM 18 C C28 D03 . . . B 2 -19.8 12.628 5.402 1 78.61 ? C28 D03 201 A 1 HETATM 19 C C26 D03 . . . B 2 -18.41 12.705 5.249 1 76.83 ? C26 D03 201 A 1 HETATM 20 C C36 D03 . . . B 2 -13.786 11.075 5.676 1 61.91 ? C36 D03 201 A 1 HETATM 21 O O37 D03 . . . B 2 -13.206 12.157 5.623 1 60.13 ? O37 D03 201 A 1 HETATM 22 N N38 D03 . . . B 2 -13.284 9.936 5.179 1 50.94 ? N38 D03 201 A 1 HETATM 23 C C40 D03 . . . B 2 -11.985 9.896 4.494 1 53.43 ? C40 D03 201 A 1 HETATM 24 C C42 D03 . . . B 2 -11.115 8.822 5.155 1 54.35 ? C42 D03 201 A 1 HETATM 25 C C45 D03 . . . B 2 -10.748 9.16 6.591 1 56.44 ? C45 D03 201 A 1 HETATM 26 C C47 D03 . . . B 2 -9.748 8.184 7.14 1 61.2 ? C47 D03 201 A 1 HETATM 27 O O48 D03 . . . B 2 -9.728 6.985 6.872 1 49.17 ? O48 D03 201 A 1 HETATM 28 N N49 D03 . . . B 2 -8.902 8.867 7.926 1 62 ? N49 D03 201 A 1 HETATM 29 C C51 D03 . . . B 2 -9.057 10.321 7.938 1 59.28 ? C51 D03 201 A 1 HETATM 30 C C54 D03 . . . B 2 -10.046 10.512 6.78 1 59.68 ? C54 D03 201 A 1 HETATM 31 C C57 D03 . . . B 2 -12.338 9.609 3.022 1 52.98 ? C57 D03 201 A 1 HETATM 32 O O58 D03 . . . B 2 -13.499 10.378 2.648 1 53.75 ? O58 D03 201 A 1 HETATM 33 C C66 D03 . . . B 2 -11.201 9.994 2.093 1 56.9 ? C66 D03 201 A 1 HETATM 34 O O67 D03 . . . B 2 -10.142 9.382 2.139 1 53.99 ? O67 D03 201 A 1 HETATM 35 N N68 D03 . . . B 2 -11.399 10.962 1.282 1 56.83 ? N68 D03 201 A 1 HETATM 36 C C70 D03 . . . B 2 -10.531 11.594 0.28 1 60.85 ? C70 D03 201 A 1 HETATM 37 C C73 D03 . . . B 2 -9.777 12.839 0.796 1 63.33 ? C73 D03 201 A 1 HETATM 38 C C74 D03 . . . B 2 -8.551 13.191 0.212 1 67.44 ? C74 D03 201 A 1 HETATM 39 C C76 D03 . . . B 2 -10.268 13.656 1.829 1 66.78 ? C76 D03 201 A 1 HETATM 40 C C78 D03 . . . B 2 -9.553 14.789 2.256 1 67.12 ? C78 D03 201 A 1 HETATM 41 C C80 D03 . . . B 2 -8.33 15.122 1.666 1 65.56 ? C80 D03 201 A 1 HETATM 42 C C82 D03 . . . B 2 -7.826 14.311 0.644 1 69.69 ? C82 D03 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 42 #