data_5NG2 # _model_server_result.job_id 1m3VWCvBbz_VzyjiTJ2eeA _model_server_result.datetime_utc '2024-11-04 20:08:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ng2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 5NG2 # _exptl.entry_id 5NG2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.531 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STAUROSPORINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NG2 _cell.length_a 96.083 _cell.length_b 96.083 _cell.length_c 202.266 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NG2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C28 H26 N4 O3' _chem_comp.formula_weight 466.531 _chem_comp.id STU _chem_comp.mon_nstd_flag . _chem_comp.name STAUROSPORINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C25 STU sing 294 n n O4 C21 STU sing 295 n n C25 C24 STU sing 296 n n C25 N3 STU sing 297 n n C25 H25 STU sing 298 n n C24 C23 STU sing 299 n n C24 H241 STU sing 300 n n C24 H242 STU sing 301 n n C23 C22 STU sing 302 n n C23 N4 STU sing 303 n n C23 H23 STU sing 304 n n C22 C21 STU sing 305 n n C22 O6 STU sing 306 n n C22 H22 STU sing 307 n n C21 C26 STU sing 308 n n C21 N2 STU sing 309 n n C26 H261 STU sing 310 n n C26 H262 STU sing 311 n n C26 H263 STU sing 312 n n N2 C18 STU sing 313 n y N2 C17 STU sing 314 n y C18 C19 STU doub 315 n y C18 C11 STU sing 316 n y C19 C6 STU sing 317 n y C19 N3 STU sing 318 n y C6 C7 STU doub 319 n y C6 C5 STU sing 320 n y C7 C10 STU sing 321 n y C7 C8 STU sing 322 n n C10 C11 STU doub 323 n y C10 C9 STU sing 324 n n C11 C12 STU sing 325 n y C12 C17 STU doub 326 n y C12 C13 STU sing 327 n y C17 C16 STU sing 328 n y C16 C15 STU doub 329 n y C16 H16 STU sing 330 n n C15 C14 STU sing 331 n y C15 H15 STU sing 332 n n C14 C13 STU doub 333 n y C14 H14 STU sing 334 n n C13 H13 STU sing 335 n n C9 N1 STU sing 336 n n C9 H91 STU sing 337 n n C9 H92 STU sing 338 n n N1 C8 STU sing 339 n n N1 HN1 STU sing 340 n n C8 O5 STU doub 341 n n C5 C20 STU doub 342 n y C5 C4 STU sing 343 n y C20 C1 STU sing 344 n y C20 N3 STU sing 345 n y C1 C2 STU doub 346 n y C1 H1 STU sing 347 n n C2 C3 STU sing 348 n y C2 H2 STU sing 349 n n C3 C4 STU doub 350 n y C3 H3 STU sing 351 n n C4 H4 STU sing 352 n n O6 C27 STU sing 353 n n C27 H271 STU sing 354 n n C27 H272 STU sing 355 n n C27 H273 STU sing 356 n n N4 C28 STU sing 357 n n N4 HN4 STU sing 358 n n C28 H281 STU sing 359 n n C28 H282 STU sing 360 n n C28 H283 STU sing 361 n n # _atom_sites.entry_id 5NG2 _atom_sites.fract_transf_matrix[1][1] 0.010408 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010408 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004944 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 STU A 1 401 2 STU STU . D 3 PO4 A 1 402 2 PO4 PO4 . E 3 PO4 A 1 403 5 PO4 PO4 . F 3 PO4 A 1 404 6 PO4 PO4 . G 2 STU B 1 401 1 STU STU . H 3 PO4 B 1 402 1 PO4 PO4 . I 3 PO4 B 1 403 7 PO4 PO4 . J 3 PO4 B 1 404 8 PO4 PO4 . K 4 HOH A 1 501 48 HOH HOH . K 4 HOH A 2 502 61 HOH HOH . K 4 HOH A 3 503 15 HOH HOH . K 4 HOH A 4 504 52 HOH HOH . K 4 HOH A 5 505 46 HOH HOH . K 4 HOH A 6 506 2 HOH HOH . K 4 HOH A 7 507 4 HOH HOH . K 4 HOH A 8 508 1 HOH HOH . K 4 HOH A 9 509 65 HOH HOH . K 4 HOH A 10 510 62 HOH HOH . K 4 HOH A 11 511 24 HOH HOH . K 4 HOH A 12 512 7 HOH HOH . K 4 HOH A 13 513 68 HOH HOH . K 4 HOH A 14 514 29 HOH HOH . K 4 HOH A 15 515 37 HOH HOH . K 4 HOH A 16 516 41 HOH HOH . K 4 HOH A 17 517 55 HOH HOH . K 4 HOH A 18 518 45 HOH HOH . K 4 HOH A 19 519 58 HOH HOH . K 4 HOH A 20 520 36 HOH HOH . K 4 HOH A 21 521 10 HOH HOH . K 4 HOH A 22 522 28 HOH HOH . K 4 HOH A 23 523 40 HOH HOH . L 4 HOH B 1 501 31 HOH HOH . L 4 HOH B 2 502 63 HOH HOH . L 4 HOH B 3 503 67 HOH HOH . L 4 HOH B 4 504 60 HOH HOH . L 4 HOH B 5 505 66 HOH HOH . L 4 HOH B 6 506 49 HOH HOH . L 4 HOH B 7 507 6 HOH HOH . L 4 HOH B 8 508 27 HOH HOH . L 4 HOH B 9 509 3 HOH HOH . L 4 HOH B 10 510 64 HOH HOH . L 4 HOH B 11 511 5 HOH HOH . L 4 HOH B 12 512 21 HOH HOH . L 4 HOH B 13 513 11 HOH HOH . L 4 HOH B 14 514 16 HOH HOH . L 4 HOH B 15 515 26 HOH HOH . L 4 HOH B 16 516 32 HOH HOH . L 4 HOH B 17 517 20 HOH HOH . L 4 HOH B 18 518 8 HOH HOH . L 4 HOH B 19 519 12 HOH HOH . L 4 HOH B 20 520 44 HOH HOH . L 4 HOH B 21 521 59 HOH HOH . L 4 HOH B 22 522 17 HOH HOH . L 4 HOH B 23 523 23 HOH HOH . L 4 HOH B 24 524 42 HOH HOH . L 4 HOH B 25 525 56 HOH HOH . L 4 HOH B 26 526 57 HOH HOH . L 4 HOH B 27 527 38 HOH HOH . L 4 HOH B 28 528 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 STU . . . G 2 53.332 115.065 -0.062 1 55.51 ? O4 STU 401 B 1 HETATM 2 C C25 STU . . . G 2 51.905 115.315 -0.09 1 55.16 ? C25 STU 401 B 1 HETATM 3 C C24 STU . . . G 2 51.295 115.753 1.257 1 56.51 ? C24 STU 401 B 1 HETATM 4 C C23 STU . . . G 2 52.47 115.975 2.212 1 59.27 ? C23 STU 401 B 1 HETATM 5 C C22 STU . . . G 2 53.259 114.666 2.382 1 57.93 ? C22 STU 401 B 1 HETATM 6 C C21 STU . . . G 2 53.956 114.364 1.036 1 55.37 ? C21 STU 401 B 1 HETATM 7 C C26 STU . . . G 2 55.369 114.957 1.048 1 53.11 ? C26 STU 401 B 1 HETATM 8 N N2 STU . . . G 2 53.948 112.868 0.765 1 54.07 ? N2 STU 401 B 1 HETATM 9 C C18 STU . . . G 2 52.942 112.258 0.059 1 52.59 ? C18 STU 401 B 1 HETATM 10 C C19 STU . . . G 2 51.711 112.823 -0.607 1 52.45 ? C19 STU 401 B 1 HETATM 11 C C6 STU . . . G 2 50.8 111.922 -1.316 1 52.44 ? C6 STU 401 B 1 HETATM 12 C C7 STU . . . G 2 51.142 110.476 -1.343 1 52.23 ? C7 STU 401 B 1 HETATM 13 C C10 STU . . . G 2 52.319 109.878 -0.719 1 52.17 ? C10 STU 401 B 1 HETATM 14 C C11 STU . . . G 2 53.239 110.809 0.001 1 51.99 ? C11 STU 401 B 1 HETATM 15 C C12 STU . . . G 2 54.486 110.63 0.742 1 52.72 ? C12 STU 401 B 1 HETATM 16 C C17 STU . . . G 2 54.911 111.98 1.227 1 52.82 ? C17 STU 401 B 1 HETATM 17 C C16 STU . . . G 2 56.098 112.019 1.97 1 52.66 ? C16 STU 401 B 1 HETATM 18 C C15 STU . . . G 2 56.819 110.834 2.21 1 53.74 ? C15 STU 401 B 1 HETATM 19 C C14 STU . . . G 2 56.388 109.579 1.741 1 54.27 ? C14 STU 401 B 1 HETATM 20 C C13 STU . . . G 2 55.208 109.46 0.993 1 53.54 ? C13 STU 401 B 1 HETATM 21 C C9 STU . . . G 2 52.338 108.439 -0.942 1 51.94 ? C9 STU 401 B 1 HETATM 22 N N1 STU . . . G 2 51.109 108.157 -1.734 1 51.84 ? N1 STU 401 B 1 HETATM 23 C C8 STU . . . G 2 50.455 109.328 -1.952 1 52.09 ? C8 STU 401 B 1 HETATM 24 O O5 STU . . . G 2 49.362 109.434 -2.609 1 51.83 ? O5 STU 401 B 1 HETATM 25 C C5 STU . . . G 2 49.74 112.774 -1.826 1 53.49 ? C5 STU 401 B 1 HETATM 26 C C20 STU . . . G 2 50.078 114.157 -1.388 1 54 ? C20 STU 401 B 1 HETATM 27 C C1 STU . . . G 2 49.188 115.171 -1.764 1 55.23 ? C1 STU 401 B 1 HETATM 28 C C2 STU . . . G 2 48.047 114.855 -2.519 1 55.31 ? C2 STU 401 B 1 HETATM 29 C C3 STU . . . G 2 47.761 113.537 -2.914 1 54.71 ? C3 STU 401 B 1 HETATM 30 C C4 STU . . . G 2 48.606 112.472 -2.571 1 53.94 ? C4 STU 401 B 1 HETATM 31 N N3 STU . . . G 2 51.25 114.11 -0.668 1 53.86 ? N3 STU 401 B 1 HETATM 32 O O6 STU . . . G 2 52.366 113.629 2.811 1 58.45 ? O6 STU 401 B 1 HETATM 33 C C27 STU . . . G 2 52.926 112.784 3.817 1 64.84 ? C27 STU 401 B 1 HETATM 34 N N4 STU . . . G 2 52.161 116.704 3.44 1 61.66 ? N4 STU 401 B 1 HETATM 35 C C28 STU . . . G 2 53.159 117.641 3.945 1 62.2 ? C28 STU 401 B 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #