data_5NG5 # _model_server_result.job_id BDBVyH_PF5jd7nBaNSmZLA _model_server_result.datetime_utc '2024-11-22 12:07:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ng5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1101}' # _entry.id 5NG5 # _exptl.entry_id 5NG5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 526.691 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[2-(3,4-dimethoxyphenyl)ethylsulfanyl]-8-[4-(2-methoxyethyl)piperazin-1-yl]-3,3-dimethyl-1,4-dihydropyrano[3,4-c]pyridine-5-carbonitrile _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentadecameric _pdbx_struct_assembly.oligomeric_count 15 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 P N N ? 5 Q N N ? 5 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 J CE1 PHE 628 K PHE 628 1_555 P C33 5QF . K 5QF 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale2 J CZ PHE 628 K PHE 628 1_555 P C1 5QF . K 5QF 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.261 ? covale ? covale3 J CZ PHE 628 K PHE 628 1_555 P C2 5QF . K 5QF 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.277 ? covale ? covale4 K CD2 PHE 178 L PHE 178 1_555 Q C11 5QF . L 5QF 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.645 ? covale ? covale5 K CE2 PHE 610 L PHE 610 1_555 Q S9 5QF . L 5QF 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? covale ? covale6 K CE2 PHE 628 L PHE 628 1_555 Q C1 5QF . L 5QF 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale7 K CE2 PHE 628 L PHE 628 1_555 Q C6 5QF . L 5QF 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.203 ? covale ? covale8 K CZ PHE 628 L PHE 628 1_555 Q C2 5QF . L 5QF 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? # _chem_comp.formula 'C28 H38 N4 O4 S' _chem_comp.formula_weight 526.691 _chem_comp.id 5QF _chem_comp.mon_nstd_flag . _chem_comp.name 6-[2-(3,4-dimethoxyphenyl)ethylsulfanyl]-8-[4-(2-methoxyethyl)piperazin-1-yl]-3,3-dimethyl-1,4-dihydropyrano[3,4-c]pyridine-5-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5NG5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 5 5QF K 1 1101 901 5QF 5QF . Q 5 5QF L 1 1101 901 5QF 5QF . R 5 5QF J 1 1101 901 5QF 5QF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 5QF . . . P 5 194.488 229.665 123.824 1 22.88 ? C1 5QF 1101 K 1 HETATM 2 C C2 5QF . . . P 5 195.554 228.904 124.132 1 22.63 ? C2 5QF 1101 K 1 HETATM 3 C C3 5QF . . . P 5 195.551 228.185 125.349 1 24.38 ? C3 5QF 1101 K 1 HETATM 4 N N4 5QF . . . P 5 194.488 228.269 126.165 1 19.06 ? N4 5QF 1101 K 1 HETATM 5 C C5 5QF . . . P 5 193.422 229.026 125.862 1 17.92 ? C5 5QF 1101 K 1 HETATM 6 C C6 5QF . . . P 5 193.409 229.738 124.67 1 21.39 ? C6 5QF 1101 K 1 HETATM 7 C C7 5QF . . . P 5 192.212 230.598 124.336 1 25.13 ? C7 5QF 1101 K 1 HETATM 8 N N8 5QF . . . P 5 191.291 231.214 124.093 1 24.73 ? N8 5QF 1101 K 1 HETATM 9 S S9 5QF . . . P 5 192.031 229.038 127.044 1 22.03 ? S9 5QF 1101 K 1 HETATM 10 C C10 5QF . . . P 5 192.572 228.835 128.782 1 23.46 ? C10 5QF 1101 K 1 HETATM 11 C C11 5QF . . . P 5 191.36 228.36 129.593 1 24.51 ? C11 5QF 1101 K 1 HETATM 12 C C12 5QF . . . P 5 191.646 228.036 131.07 1 24.73 ? C12 5QF 1101 K 1 HETATM 13 C C13 5QF . . . P 5 190.607 228.083 131.973 1 22.96 ? C13 5QF 1101 K 1 HETATM 14 C C14 5QF . . . P 5 190.811 227.786 133.312 1 20.62 ? C14 5QF 1101 K 1 HETATM 15 C C15 5QF . . . P 5 192.064 227.43 133.742 1 24.96 ? C15 5QF 1101 K 1 HETATM 16 C C16 5QF . . . P 5 193.102 227.371 132.837 1 28.6 ? C16 5QF 1101 K 1 HETATM 17 C C17 5QF . . . P 5 192.896 227.678 131.51 1 25.53 ? C17 5QF 1101 K 1 HETATM 18 O O18 5QF . . . P 5 194.373 227.006 133.27 1 45.42 ? O18 5QF 1101 K 1 HETATM 19 O O19 5QF . . . P 5 192.286 227.127 135.094 1 29.64 ? O19 5QF 1101 K 1 HETATM 20 C C20 5QF . . . P 5 194.955 225.91 132.611 1 46.69 ? C20 5QF 1101 K 1 HETATM 21 C C21 5QF . . . P 5 192.545 225.767 135.327 1 30.12 ? C21 5QF 1101 K 1 HETATM 22 N N22 5QF . . . P 5 196.694 227.334 125.787 1 37.4 ? N22 5QF 1101 K 1 HETATM 23 C C23 5QF . . . P 5 196.732 226.076 125.108 1 50.6 ? C23 5QF 1101 K 1 HETATM 24 C C24 5QF . . . P 5 197.968 225.303 125.549 1 51.79 ? C24 5QF 1101 K 1 HETATM 25 N N25 5QF . . . P 5 198.008 225.085 126.996 1 49.2 ? N25 5QF 1101 K 1 HETATM 26 C C26 5QF . . . P 5 197.808 226.344 127.711 1 48.18 ? C26 5QF 1101 K 1 HETATM 27 C C27 5QF . . . P 5 196.593 227.106 127.213 1 43.7 ? C27 5QF 1101 K 1 HETATM 28 C C28 5QF . . . P 5 197.055 224.014 127.433 1 47.05 ? C28 5QF 1101 K 1 HETATM 29 C C29 5QF . . . P 5 197.421 223.456 128.836 1 44.24 ? C29 5QF 1101 K 1 HETATM 30 O O30 5QF . . . P 5 196.29 223.485 129.68 1 45.79 ? O30 5QF 1101 K 1 HETATM 31 C C31 5QF . . . P 5 195.478 222.327 129.67 1 40.15 ? C31 5QF 1101 K 1 HETATM 32 C C32 5QF . . . P 5 194.521 230.407 122.514 1 27.71 ? C32 5QF 1101 K 1 HETATM 33 C C33 5QF . . . P 5 195.541 230.002 121.515 1 32.36 ? C33 5QF 1101 K 1 HETATM 34 O O34 5QF . . . P 5 196.834 229.768 122.069 1 27.53 ? O34 5QF 1101 K 1 HETATM 35 C C35 5QF . . . P 5 196.777 228.84 123.143 1 23.33 ? C35 5QF 1101 K 1 HETATM 36 C C36 5QF . . . P 5 195.602 231.115 120.472 1 39.81 ? C36 5QF 1101 K 1 HETATM 37 C C37 5QF . . . P 5 195.086 228.748 120.801 1 36.39 ? C37 5QF 1101 K 1 HETATM 38 H H1 5QF . . . P 5 193.284 228.182 128.812 1 23.46 ? H1 5QF 1101 K 1 HETATM 39 H H2 5QF . . . P 5 192.882 229.669 129.152 1 23.46 ? H2 5QF 1101 K 1 HETATM 40 H H3 5QF . . . P 5 191.014 227.571 129.169 1 24.51 ? H3 5QF 1101 K 1 HETATM 41 H H4 5QF . . . P 5 190.673 229.024 129.559 1 24.51 ? H4 5QF 1101 K 1 HETATM 42 H H5 5QF . . . P 5 189.766 228.323 131.677 1 22.96 ? H5 5QF 1101 K 1 HETATM 43 H H6 5QF . . . P 5 190.111 227.826 133.922 1 20.62 ? H6 5QF 1101 K 1 HETATM 44 H H7 5QF . . . P 5 193.599 227.63 130.909 1 25.53 ? H7 5QF 1101 K 1 HETATM 45 H H8 5QF . . . P 5 195.211 226.159 131.712 1 46.69 ? H8 5QF 1101 K 1 HETATM 46 H H9 5QF . . . P 5 194.327 225.177 132.576 1 46.69 ? H9 5QF 1101 K 1 HETATM 47 H H10 5QF . . . P 5 195.747 225.631 133.093 1 46.69 ? H10 5QF 1101 K 1 HETATM 48 H H11 5QF . . . P 5 193.466 225.577 135.092 1 30.12 ? H11 5QF 1101 K 1 HETATM 49 H H12 5QF . . . P 5 191.953 225.227 134.784 1 30.12 ? H12 5QF 1101 K 1 HETATM 50 H H13 5QF . . . P 5 192.397 225.556 136.261 1 30.12 ? H13 5QF 1101 K 1 HETATM 51 H H14 5QF . . . P 5 195.939 225.581 125.335 1 50.6 ? H14 5QF 1101 K 1 HETATM 52 H H15 5QF . . . P 5 196.78 226.219 124.159 1 50.6 ? H15 5QF 1101 K 1 HETATM 53 H H16 5QF . . . P 5 198.747 225.821 125.289 1 51.79 ? H16 5QF 1101 K 1 HETATM 54 H H17 5QF . . . P 5 197.982 224.46 125.077 1 51.79 ? H17 5QF 1101 K 1 HETATM 55 H H19 5QF . . . P 5 197.718 226.191 128.662 1 48.18 ? H19 5QF 1101 K 1 HETATM 56 H H20 5QF . . . P 5 198.561 226.922 127.555 1 48.18 ? H20 5QF 1101 K 1 HETATM 57 H H21 5QF . . . P 5 195.814 226.575 127.425 1 43.7 ? H21 5QF 1101 K 1 HETATM 58 H H22 5QF . . . P 5 196.557 227.958 127.666 1 43.7 ? H22 5QF 1101 K 1 HETATM 59 H H23 5QF . . . P 5 196.15 224.354 127.459 1 47.05 ? H23 5QF 1101 K 1 HETATM 60 H H24 5QF . . . P 5 197.089 223.273 126.812 1 47.05 ? H24 5QF 1101 K 1 HETATM 61 H H25 5QF . . . P 5 198.132 223.989 129.223 1 44.24 ? H25 5QF 1101 K 1 HETATM 62 H H26 5QF . . . P 5 197.727 222.543 128.732 1 44.24 ? H26 5QF 1101 K 1 HETATM 63 H H27 5QF . . . P 5 195.868 221.648 130.239 1 40.15 ? H27 5QF 1101 K 1 HETATM 64 H H28 5QF . . . P 5 194.595 222.544 130.008 1 40.15 ? H28 5QF 1101 K 1 HETATM 65 H H29 5QF . . . P 5 195.402 221.99 128.764 1 40.15 ? H29 5QF 1101 K 1 HETATM 66 H H30 5QF . . . P 5 194.624 231.342 122.708 1 27.71 ? H30 5QF 1101 K 1 HETATM 67 H H31 5QF . . . P 5 193.673 230.265 122.076 1 27.71 ? H31 5QF 1101 K 1 HETATM 68 H H32 5QF . . . P 5 196.807 227.96 122.752 1 23.33 ? H32 5QF 1101 K 1 HETATM 69 H H33 5QF . . . P 5 197.575 228.952 123.676 1 23.33 ? H33 5QF 1101 K 1 HETATM 70 H H34 5QF . . . P 5 196.18 231.815 120.799 1 39.81 ? H34 5QF 1101 K 1 HETATM 71 H H35 5QF . . . P 5 194.706 231.457 120.332 1 39.81 ? H35 5QF 1101 K 1 HETATM 72 H H36 5QF . . . P 5 195.944 230.752 119.645 1 39.81 ? H36 5QF 1101 K 1 HETATM 73 H H37 5QF . . . P 5 194.616 228.184 121.428 1 36.39 ? H37 5QF 1101 K 1 HETATM 74 H H38 5QF . . . P 5 194.5 228.991 120.069 1 36.39 ? H38 5QF 1101 K 1 HETATM 75 H H39 5QF . . . P 5 195.866 228.283 120.467 1 36.39 ? H39 5QF 1101 K 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 79 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 75 #