data_5NG5
#
_model_server_result.job_id            bTdiwjeKIeiv_caFbJmNHQ 
_model_server_result.datetime_utc      '2024-11-04 22:40:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ng5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":1101}' 
#
_entry.id    5NG5 
#
_exptl.entry_id    5NG5 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              526.691 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-[2-(3,4-dimethoxyphenyl)ethylsulfanyl]-8-[4-(2-methoxyethyl)piperazin-1-yl]-3,3-dimethyl-1,4-dihydropyrano[3,4-c]pyridine-5-carbonitrile 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentadecameric 
_pdbx_struct_assembly.oligomeric_count      15 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 P N N 
? 5 Q N N 
? 5 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 J CE1 PHE 628 K PHE 628 1_555 P C33 5QF . K 5QF 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? 
covale ? covale2 J CZ PHE 628 K PHE 628 1_555 P C1 5QF . K 5QF 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.261 ? 
covale ? covale3 J CZ PHE 628 K PHE 628 1_555 P C2 5QF . K 5QF 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.277 ? 
covale ? covale4 K CD2 PHE 178 L PHE 178 1_555 Q C11 5QF . L 5QF 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.645 ? 
covale ? covale5 K CE2 PHE 610 L PHE 610 1_555 Q S9 5QF . L 5QF 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? 
covale ? covale6 K CE2 PHE 628 L PHE 628 1_555 Q C1 5QF . L 5QF 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? 
covale ? covale7 K CE2 PHE 628 L PHE 628 1_555 Q C6 5QF . L 5QF 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.203 ? 
covale ? covale8 K CZ PHE 628 L PHE 628 1_555 Q C2 5QF . L 5QF 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? 
#
_chem_comp.formula           'C28 H38 N4 O4 S' 
_chem_comp.formula_weight    526.691 
_chem_comp.id                5QF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-[2-(3,4-dimethoxyphenyl)ethylsulfanyl]-8-[4-(2-methoxyethyl)piperazin-1-yl]-3,3-dimethyl-1,4-dihydropyrano[3,4-c]pyridine-5-carbonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5NG5 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
P 5 5QF K 1 1101 901 5QF 5QF . 
Q 5 5QF L 1 1101 901 5QF 5QF . 
R 5 5QF J 1 1101 901 5QF 5QF . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 5QF . . . Q 5 177.106 180.206 123.446 1 22.88 ? C1 5QF 1101 L 1 
HETATM 2 C C2 5QF . . . Q 5 177.446 181.378 123.981 1 22.63 ? C2 5QF 1101 L 1 
HETATM 3 C C3 5QF . . . Q 5 178.031 181.402 125.26 1 24.38 ? C3 5QF 1101 L 1 
HETATM 4 N N4 5QF . . . Q 5 178.216 180.27 125.946 1 19.06 ? N4 5QF 1101 L 1 
HETATM 5 C C5 5QF . . . Q 5 177.864 179.09 125.408 1 17.92 ? C5 5QF 1101 L 1 
HETATM 6 C C6 5QF . . . Q 5 177.302 179.048 124.145 1 21.39 ? C6 5QF 1101 L 1 
HETATM 7 C C7 5QF . . . Q 5 176.92 177.723 123.541 1 25.13 ? C7 5QF 1101 L 1 
HETATM 8 N N8 5QF . . . Q 5 176.617 176.739 123.07 1 24.73 ? N8 5QF 1101 L 1 
HETATM 9 S S9 5QF . . . Q 5 178.167 177.572 126.359 1 22.03 ? S9 5QF 1101 L 1 
HETATM 10 C C10 5QF . . . Q 5 178.756 177.913 128.053 1 23.46 ? C10 5QF 1101 L 1 
HETATM 11 C C11 5QF . . . Q 5 179.929 178.843 128.282 1 24.51 ? C11 5QF 1101 L 1 
HETATM 12 C C12 5QF . . . Q 5 179.701 179.211 129.745 1 24.73 ? C12 5QF 1101 L 1 
HETATM 13 C C13 5QF . . . Q 5 180.005 178.27 130.696 1 22.96 ? C13 5QF 1101 L 1 
HETATM 14 C C14 5QF . . . Q 5 179.809 178.559 132.02 1 20.62 ? C14 5QF 1101 L 1 
HETATM 15 C C15 5QF . . . Q 5 179.317 179.778 132.38 1 24.96 ? C15 5QF 1101 L 1 
HETATM 16 C C16 5QF . . . Q 5 179.001 180.733 131.434 1 28.6 ? C16 5QF 1101 L 1 
HETATM 17 C C17 5QF . . . Q 5 179.19 180.441 130.098 1 25.53 ? C17 5QF 1101 L 1 
HETATM 18 O O18 5QF . . . Q 5 178.503 181.985 131.823 1 45.42 ? O18 5QF 1101 L 1 
HETATM 19 O O19 5QF . . . Q 5 179.167 180.019 133.74 1 29.64 ? O19 5QF 1101 L 1 
HETATM 20 C C20 5QF . . . Q 5 179.486 182.898 132.247 1 46.69 ? C20 5QF 1101 L 1 
HETATM 21 C C21 5QF . . . Q 5 180.41 180.117 134.376 1 30.12 ? C21 5QF 1101 L 1 
HETATM 22 N N22 5QF . . . Q 5 178.415 182.666 125.92 1 37.4 ? N22 5QF 1101 L 1 
HETATM 23 C C23 5QF . . . Q 5 179.401 183.543 125.376 1 50.6 ? C23 5QF 1101 L 1 
HETATM 24 C C24 5QF . . . Q 5 178.862 184.937 125.637 1 51.79 ? C24 5QF 1101 L 1 
HETATM 25 N N25 5QF . . . Q 5 178.66 185.175 127.063 1 49.2 ? N25 5QF 1101 L 1 
HETATM 26 C C26 5QF . . . Q 5 177.763 184.17 127.622 1 48.18 ? C26 5QF 1101 L 1 
HETATM 27 C C27 5QF . . . Q 5 178.201 182.741 127.332 1 43.7 ? C27 5QF 1101 L 1 
HETATM 28 C C28 5QF . . . Q 5 179.954 185.262 127.806 1 47.05 ? C28 5QF 1101 L 1 
HETATM 29 C C29 5QF . . . Q 5 179.947 186.408 128.853 1 44.24 ? C29 5QF 1101 L 1 
HETATM 30 O O30 5QF . . . Q 5 179.752 185.869 130.143 1 45.79 ? O30 5QF 1101 L 1 
HETATM 31 C C31 5QF . . . Q 5 179.62 186.799 131.202 1 40.15 ? C31 5QF 1101 L 1 
HETATM 32 C C32 5QF . . . Q 5 176.496 180.209 122.072 1 27.71 ? C32 5QF 1101 L 1 
HETATM 33 C C33 5QF . . . Q 5 176.185 181.5 121.398 1 32.36 ? C33 5QF 1101 L 1 
HETATM 34 O O34 5QF . . . Q 5 176.137 182.659 122.231 1 27.53 ? O34 5QF 1101 L 1 
HETATM 35 C C35 5QF . . . Q 5 177.2 182.681 123.153 1 23.33 ? C35 5QF 1101 L 1 
HETATM 36 C C36 5QF . . . Q 5 174.774 181.355 120.831 1 39.81 ? C36 5QF 1101 L 1 
HETATM 37 C C37 5QF . . . Q 5 177.193 181.733 120.286 1 36.39 ? C37 5QF 1101 L 1 
HETATM 38 H H1 5QF . . . Q 5 179.005 177.063 128.429 1 23.46 ? H1 5QF 1101 L 1 
HETATM 39 H H2 5QF . . . Q 5 178.026 178.267 128.573 1 23.46 ? H2 5QF 1101 L 1 
HETATM 40 H H3 5QF . . . Q 5 179.92 179.635 127.734 1 24.51 ? H3 5QF 1101 L 1 
HETATM 41 H H4 5QF . . . Q 5 180.764 178.363 128.189 1 24.51 ? H4 5QF 1101 L 1 
HETATM 42 H H5 5QF . . . Q 5 180.342 177.446 130.438 1 22.96 ? H5 5QF 1101 L 1 
HETATM 43 H H6 5QF . . . Q 5 180.026 177.942 132.677 1 20.62 ? H6 5QF 1101 L 1 
HETATM 44 H H7 5QF . . . Q 5 178.986 181.065 129.444 1 25.53 ? H7 5QF 1101 L 1 
HETATM 45 H H8 5QF . . . Q 5 179.886 183.332 131.48 1 46.69 ? H8 5QF 1101 L 1 
HETATM 46 H H9 5QF . . . Q 5 180.171 182.434 132.751 1 46.69 ? H9 5QF 1101 L 1 
HETATM 47 H H10 5QF . . . Q 5 179.071 183.566 132.814 1 46.69 ? H10 5QF 1101 L 1 
HETATM 48 H H11 5QF . . . Q 5 180.31 180.645 135.179 1 30.12 ? H11 5QF 1101 L 1 
HETATM 49 H H12 5QF . . . Q 5 180.736 179.234 134.6 1 30.12 ? H12 5QF 1101 L 1 
HETATM 50 H H13 5QF . . . Q 5 181.04 180.541 133.778 1 30.12 ? H13 5QF 1101 L 1 
HETATM 51 H H14 5QF . . . Q 5 180.244 183.397 125.821 1 50.6 ? H14 5QF 1101 L 1 
HETATM 52 H H15 5QF . . . Q 5 179.479 183.412 124.43 1 50.6 ? H15 5QF 1101 L 1 
HETATM 53 H H16 5QF . . . Q 5 177.999 184.984 125.199 1 51.79 ? H16 5QF 1101 L 1 
HETATM 54 H H17 5QF . . . Q 5 179.459 185.594 125.253 1 51.79 ? H17 5QF 1101 L 1 
HETATM 55 H H19 5QF . . . Q 5 176.907 184.267 127.185 1 48.18 ? H19 5QF 1101 L 1 
HETATM 56 H H20 5QF . . . Q 5 177.656 184.3 128.574 1 48.18 ? H20 5QF 1101 L 1 
HETATM 57 H H21 5QF . . . Q 5 177.49 182.141 127.58 1 43.7 ? H21 5QF 1101 L 1 
HETATM 58 H H22 5QF . . . Q 5 179.019 182.515 127.79 1 43.7 ? H22 5QF 1101 L 1 
HETATM 59 H H23 5QF . . . Q 5 180.677 185.421 127.182 1 47.05 ? H23 5QF 1101 L 1 
HETATM 60 H H24 5QF . . . Q 5 180.128 184.438 128.273 1 47.05 ? H24 5QF 1101 L 1 
HETATM 61 H H25 5QF . . . Q 5 180.806 186.859 128.819 1 44.24 ? H25 5QF 1101 L 1 
HETATM 62 H H26 5QF . . . Q 5 179.247 187.036 128.64 1 44.24 ? H26 5QF 1101 L 1 
HETATM 63 H H27 5QF . . . Q 5 179.027 186.438 131.88 1 40.15 ? H27 5QF 1101 L 1 
HETATM 64 H H28 5QF . . . Q 5 179.249 187.634 130.877 1 40.15 ? H28 5QF 1101 L 1 
HETATM 65 H H29 5QF . . . Q 5 180.485 186.968 131.603 1 40.15 ? H29 5QF 1101 L 1 
HETATM 66 H H30 5QF . . . Q 5 175.673 179.715 122.149 1 27.71 ? H30 5QF 1101 L 1 
HETATM 67 H H31 5QF . . . Q 5 177.087 179.714 121.489 1 27.71 ? H31 5QF 1101 L 1 
HETATM 68 H H32 5QF . . . Q 5 177.039 183.395 123.785 1 23.33 ? H32 5QF 1101 L 1 
HETATM 69 H H33 5QF . . . Q 5 178.01 182.881 122.66 1 23.33 ? H33 5QF 1101 L 1 
HETATM 70 H H34 5QF . . . Q 5 174.735 180.575 120.258 1 39.81 ? H34 5QF 1101 L 1 
HETATM 71 H H35 5QF . . . Q 5 174.562 182.15 120.329 1 39.81 ? H35 5QF 1101 L 1 
HETATM 72 H H36 5QF . . . Q 5 174.149 181.268 121.567 1 39.81 ? H36 5QF 1101 L 1 
HETATM 73 H H37 5QF . . . Q 5 178.083 181.62 120.646 1 36.39 ? H37 5QF 1101 L 1 
HETATM 74 H H38 5QF . . . Q 5 177.05 181.096 119.57 1 36.39 ? H38 5QF 1101 L 1 
HETATM 75 H H39 5QF . . . Q 5 177.099 182.639 119.961 1 36.39 ? H39 5QF 1101 L 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    59 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           75 
#