data_5NGR
#
_model_server_result.job_id            QeWzO_0IPpI4LXKwHtVSSw 
_model_server_result.datetime_utc      '2025-09-14 05:33:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ngr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":201}' 
#
_entry.id    5NGR 
#
_exptl.entry_id    5NGR 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              181.218 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            8-methylsulfanyl-7~{H}-purin-6-amine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NGR 
_cell.length_a            59.902 
_cell.length_b            67.842 
_cell.length_c            82.131 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NGR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,K 1 1 
B,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
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_chem_comp.formula           'C6 H7 N5 S' 
_chem_comp.formula_weight    181.218 
_chem_comp.id                8WT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              8-methylsulfanyl-7~{H}-purin-6-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 N3 8WT doub 1 n y 
C5 N4 8WT sing 2 n y 
N3 C4 8WT sing 3 n y 
N4 C6 8WT doub 4 n y 
C4 N2 8WT sing 5 n n 
C4 C3 8WT doub 6 n y 
C6 C3 8WT sing 7 n y 
C6 N5 8WT sing 8 n y 
C3 N1 8WT sing 9 n y 
N5 C2 8WT doub 10 n y 
N1 C2 8WT sing 11 n y 
C2 S1 8WT sing 12 n n 
S1 C1 8WT sing 13 n n 
C5 H1 8WT sing 14 n n 
N1 H2 8WT sing 15 n n 
N2 H3 8WT sing 16 n n 
N2 H4 8WT sing 17 n n 
C1 H5 8WT sing 18 n n 
C1 H6 8WT sing 19 n n 
C1 H7 8WT sing 20 n n 
#
_atom_sites.entry_id                     5NGR 
_atom_sites.fract_transf_matrix[1][1]    0.016694 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01474 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012176 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 8WT A 1 201 2 8WT DRG . 
D 3 SO4 A 1 202 3 SO4 SO4 . 
E 3 SO4 A 1 203 4 SO4 SO4 . 
F 3 SO4 A 1 204 5 SO4 SO4 . 
G 3 SO4 A 1 205 6 SO4 SO4 . 
H 2 8WT B 1 201 1 8WT DRG . 
I 3 SO4 B 1 202 1 SO4 SO4 . 
J 3 SO4 B 1 203 2 SO4 SO4 . 
K 4 HOH A 1 301 44 HOH HOH . 
K 4 HOH A 2 302 60 HOH HOH . 
K 4 HOH A 3 303 1 HOH HOH . 
K 4 HOH A 4 304 56 HOH HOH . 
K 4 HOH A 5 305 17 HOH HOH . 
K 4 HOH A 6 306 40 HOH HOH . 
K 4 HOH A 7 307 32 HOH HOH . 
K 4 HOH A 8 308 28 HOH HOH . 
K 4 HOH A 9 309 74 HOH HOH . 
K 4 HOH A 10 310 41 HOH HOH . 
K 4 HOH A 11 311 19 HOH HOH . 
K 4 HOH A 12 312 3 HOH HOH . 
K 4 HOH A 13 313 2 HOH HOH . 
K 4 HOH A 14 314 18 HOH HOH . 
K 4 HOH A 15 315 38 HOH HOH . 
K 4 HOH A 16 316 20 HOH HOH . 
K 4 HOH A 17 317 35 HOH HOH . 
K 4 HOH A 18 318 73 HOH HOH . 
K 4 HOH A 19 319 29 HOH HOH . 
K 4 HOH A 20 320 84 HOH HOH . 
K 4 HOH A 21 321 42 HOH HOH . 
K 4 HOH A 22 322 13 HOH HOH . 
K 4 HOH A 23 323 7 HOH HOH . 
K 4 HOH A 24 324 14 HOH HOH . 
K 4 HOH A 25 325 34 HOH HOH . 
K 4 HOH A 26 326 6 HOH HOH . 
K 4 HOH A 27 327 12 HOH HOH . 
K 4 HOH A 28 328 5 HOH HOH . 
K 4 HOH A 29 329 82 HOH HOH . 
K 4 HOH A 30 330 15 HOH HOH . 
K 4 HOH A 31 331 96 HOH HOH . 
K 4 HOH A 32 332 72 HOH HOH . 
K 4 HOH A 33 333 22 HOH HOH . 
K 4 HOH A 34 334 81 HOH HOH . 
K 4 HOH A 35 335 67 HOH HOH . 
K 4 HOH A 36 336 43 HOH HOH . 
K 4 HOH A 37 337 30 HOH HOH . 
K 4 HOH A 38 338 83 HOH HOH . 
K 4 HOH A 39 339 11 HOH HOH . 
K 4 HOH A 40 340 66 HOH HOH . 
K 4 HOH A 41 341 75 HOH HOH . 
K 4 HOH A 42 342 62 HOH HOH . 
K 4 HOH A 43 343 68 HOH HOH . 
K 4 HOH A 44 344 85 HOH HOH . 
K 4 HOH A 45 345 23 HOH HOH . 
K 4 HOH A 46 346 78 HOH HOH . 
K 4 HOH A 47 347 59 HOH HOH . 
K 4 HOH A 48 348 64 HOH HOH . 
K 4 HOH A 49 349 31 HOH HOH . 
K 4 HOH A 50 350 79 HOH HOH . 
L 4 HOH B 1 301 45 HOH HOH . 
L 4 HOH B 2 302 8 HOH HOH . 
L 4 HOH B 3 303 33 HOH HOH . 
L 4 HOH B 4 304 37 HOH HOH . 
L 4 HOH B 5 305 26 HOH HOH . 
L 4 HOH B 6 306 48 HOH HOH . 
L 4 HOH B 7 307 24 HOH HOH . 
L 4 HOH B 8 308 50 HOH HOH . 
L 4 HOH B 9 309 94 HOH HOH . 
L 4 HOH B 10 310 70 HOH HOH . 
L 4 HOH B 11 311 9 HOH HOH . 
L 4 HOH B 12 312 36 HOH HOH . 
L 4 HOH B 13 313 91 HOH HOH . 
L 4 HOH B 14 314 51 HOH HOH . 
L 4 HOH B 15 315 21 HOH HOH . 
L 4 HOH B 16 316 53 HOH HOH . 
L 4 HOH B 17 317 27 HOH HOH . 
L 4 HOH B 18 318 55 HOH HOH . 
L 4 HOH B 19 319 49 HOH HOH . 
L 4 HOH B 20 320 57 HOH HOH . 
L 4 HOH B 21 321 54 HOH HOH . 
L 4 HOH B 22 322 46 HOH HOH . 
L 4 HOH B 23 323 16 HOH HOH . 
L 4 HOH B 24 324 89 HOH HOH . 
L 4 HOH B 25 325 25 HOH HOH . 
L 4 HOH B 26 326 87 HOH HOH . 
L 4 HOH B 27 327 90 HOH HOH . 
L 4 HOH B 28 328 95 HOH HOH . 
L 4 HOH B 29 329 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 8WT . . . H 2 -28.937 13.443 12.091 1 35.25 ? C4 8WT 201 B 1 
HETATM 2 C C5 8WT . . . H 2 -26.96 13.451 10.866 1 32.91 ? C5 8WT 201 B 1 
HETATM 3 C C6 8WT . . . H 2 -26.942 12.361 12.827 1 36.16 ? C6 8WT 201 B 1 
HETATM 4 N N1 8WT . . . H 2 -28.655 12.144 14.276 1 34.77 ? N1 8WT 201 B 1 
HETATM 5 N N2 8WT . . . H 2 -30.215 13.808 12.204 1 38.83 ? N2 8WT 201 B 1 
HETATM 6 C C3 8WT . . . H 2 -28.264 12.675 13.06 1 35.95 ? C3 8WT 201 B 1 
HETATM 7 N N3 8WT . . . H 2 -28.247 13.829 10.989 1 33.43 ? N3 8WT 201 B 1 
HETATM 8 C C1 8WT . . . H 2 -29.127 10.834 16.865 1 44.48 ? C1 8WT 201 B 1 
HETATM 9 S S1 8WT . . . H 2 -27.446 10.706 16.263 1 47 ? S1 8WT 201 B 1 
HETATM 10 C C2 8WT . . . H 2 -27.585 11.546 14.753 1 37.94 ? C2 8WT 201 B 1 
HETATM 11 N N4 8WT . . . H 2 -26.249 12.724 11.731 1 31.99 ? N4 8WT 201 B 1 
HETATM 12 N N5 8WT . . . H 2 -26.519 11.637 13.909 1 35.86 ? N5 8WT 201 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           12 
#