data_5NGX
#
_model_server_result.job_id            5mRRG_bZ6J3sO2aioa_Yrg 
_model_server_result.datetime_utc      '2024-11-22 17:44:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ngx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    5NGX 
#
_exptl.entry_id    5NGX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5NGX 
_cell.length_a            53.91 
_cell.length_b            53.91 
_cell.length_c            183.21 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NGX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PCA 1 A PCA 1 1_555 A N PHE 2 A PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? 
covale ? covale2 A SG CYS 116 A CYS 116 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
covale ? covale3 A SG CYS 119 A CYS 119 1_555 B CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? 
metalc ? metalc1 A NE2 HIS 120 A HIS 120 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc2 B FE HEC . A HEC 201 1_555 C N NO2 . A NO2 202 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc3 B FE HEC . A HEC 201 1_555 E O HOH . A HOH 382 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.074 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5NGX 
_atom_sites.fract_transf_matrix[1][1]    0.018549 
_atom_sites.fract_transf_matrix[1][2]    0.01071 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021419 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005458 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEC A 1 201 128 HEC MEH . 
C 3 NO2 A 1 202 544 NO2 NO2 . 
D 4 GOL A 1 203 1 GOL GOL . 
E 5 HOH A 1 301 257 HOH HOH . 
E 5 HOH A 2 302 291 HOH HOH . 
E 5 HOH A 3 303 48 HOH HOH . 
E 5 HOH A 4 304 76 HOH HOH . 
E 5 HOH A 5 305 362 HOH HOH . 
E 5 HOH A 6 306 272 HOH HOH . 
E 5 HOH A 7 307 99 HOH HOH . 
E 5 HOH A 8 308 331 HOH HOH . 
E 5 HOH A 9 309 131 HOH HOH . 
E 5 HOH A 10 310 146 HOH HOH . 
E 5 HOH A 11 311 73 HOH HOH . 
E 5 HOH A 12 312 350 HOH HOH . 
E 5 HOH A 13 313 59 HOH HOH . 
E 5 HOH A 14 314 30 HOH HOH . 
E 5 HOH A 15 315 36 HOH HOH . 
E 5 HOH A 16 316 19 HOH HOH . 
E 5 HOH A 17 317 290 HOH HOH . 
E 5 HOH A 18 318 134 HOH HOH . 
E 5 HOH A 19 319 120 HOH HOH . 
E 5 HOH A 20 320 17 HOH HOH . 
E 5 HOH A 21 321 180 HOH HOH . 
E 5 HOH A 22 322 9 HOH HOH . 
E 5 HOH A 23 323 81 HOH HOH . 
E 5 HOH A 24 324 119 HOH HOH . 
E 5 HOH A 25 325 325 HOH HOH . 
E 5 HOH A 26 326 98 HOH HOH . 
E 5 HOH A 27 327 103 HOH HOH . 
E 5 HOH A 28 328 42 HOH HOH . 
E 5 HOH A 29 329 77 HOH HOH . 
E 5 HOH A 30 330 80 HOH HOH . 
E 5 HOH A 31 331 60 HOH HOH . 
E 5 HOH A 32 332 241 HOH HOH . 
E 5 HOH A 33 333 109 HOH HOH . 
E 5 HOH A 34 334 168 HOH HOH . 
E 5 HOH A 35 335 352 HOH HOH . 
E 5 HOH A 36 336 267 HOH HOH . 
E 5 HOH A 37 337 125 HOH HOH . 
E 5 HOH A 38 338 104 HOH HOH . 
E 5 HOH A 39 339 338 HOH HOH . 
E 5 HOH A 40 340 12 HOH HOH . 
E 5 HOH A 41 341 91 HOH HOH . 
E 5 HOH A 42 342 15 HOH HOH . 
E 5 HOH A 43 343 55 HOH HOH . 
E 5 HOH A 44 344 292 HOH HOH . 
E 5 HOH A 45 345 29 HOH HOH . 
E 5 HOH A 46 346 97 HOH HOH . 
E 5 HOH A 47 347 6 HOH HOH . 
E 5 HOH A 48 348 286 HOH HOH . 
E 5 HOH A 49 349 96 HOH HOH . 
E 5 HOH A 50 350 13 HOH HOH . 
E 5 HOH A 51 351 295 HOH HOH . 
E 5 HOH A 52 352 336 HOH HOH . 
E 5 HOH A 53 353 23 HOH HOH . 
E 5 HOH A 54 354 49 HOH HOH . 
E 5 HOH A 55 355 31 HOH HOH . 
E 5 HOH A 56 356 349 HOH HOH . 
E 5 HOH A 57 357 18 HOH HOH . 
E 5 HOH A 58 358 153 HOH HOH . 
E 5 HOH A 59 359 268 HOH HOH . 
E 5 HOH A 60 360 28 HOH HOH . 
E 5 HOH A 61 361 248 HOH HOH . 
E 5 HOH A 62 362 47 HOH HOH . 
E 5 HOH A 63 363 74 HOH HOH . 
E 5 HOH A 64 364 83 HOH HOH . 
E 5 HOH A 65 365 111 HOH HOH . 
E 5 HOH A 66 366 243 HOH HOH . 
E 5 HOH A 67 367 46 HOH HOH . 
E 5 HOH A 68 368 11 HOH HOH . 
E 5 HOH A 69 369 16 HOH HOH . 
E 5 HOH A 70 370 24 HOH HOH . 
E 5 HOH A 71 371 87 HOH HOH . 
E 5 HOH A 72 372 26 HOH HOH . 
E 5 HOH A 73 373 242 HOH HOH . 
E 5 HOH A 74 374 345 HOH HOH . 
E 5 HOH A 75 375 43 HOH HOH . 
E 5 HOH A 76 376 65 HOH HOH . 
E 5 HOH A 77 377 133 HOH HOH . 
E 5 HOH A 78 378 105 HOH HOH . 
E 5 HOH A 79 379 45 HOH HOH . 
E 5 HOH A 80 380 328 HOH HOH . 
E 5 HOH A 81 381 33 HOH HOH . 
E 5 HOH A 82 382 323 HOH HOH . 
E 5 HOH A 83 383 61 HOH HOH . 
E 5 HOH A 84 384 126 HOH HOH . 
E 5 HOH A 85 385 130 HOH HOH . 
E 5 HOH A 86 386 192 HOH HOH . 
E 5 HOH A 87 387 160 HOH HOH . 
E 5 HOH A 88 388 86 HOH HOH . 
E 5 HOH A 89 389 68 HOH HOH . 
E 5 HOH A 90 390 64 HOH HOH . 
E 5 HOH A 91 391 118 HOH HOH . 
E 5 HOH A 92 392 20 HOH HOH . 
E 5 HOH A 93 393 284 HOH HOH . 
E 5 HOH A 94 394 246 HOH HOH . 
E 5 HOH A 95 395 1 HOH HOH . 
E 5 HOH A 96 396 39 HOH HOH . 
E 5 HOH A 97 397 78 HOH HOH . 
E 5 HOH A 98 398 249 HOH HOH . 
E 5 HOH A 99 399 285 HOH HOH . 
E 5 HOH A 100 400 4 HOH HOH . 
E 5 HOH A 101 401 156 HOH HOH . 
E 5 HOH A 102 402 8 HOH HOH . 
E 5 HOH A 103 403 53 HOH HOH . 
E 5 HOH A 104 404 5 HOH HOH . 
E 5 HOH A 105 405 361 HOH HOH . 
E 5 HOH A 106 406 70 HOH HOH . 
E 5 HOH A 107 407 67 HOH HOH . 
E 5 HOH A 108 408 72 HOH HOH . 
E 5 HOH A 109 409 2 HOH HOH . 
E 5 HOH A 110 410 38 HOH HOH . 
E 5 HOH A 111 411 214 HOH HOH . 
E 5 HOH A 112 412 79 HOH HOH . 
E 5 HOH A 113 413 89 HOH HOH . 
E 5 HOH A 114 414 191 HOH HOH . 
E 5 HOH A 115 415 240 HOH HOH . 
E 5 HOH A 116 416 157 HOH HOH . 
E 5 HOH A 117 417 171 HOH HOH . 
E 5 HOH A 118 418 239 HOH HOH . 
E 5 HOH A 119 419 289 HOH HOH . 
E 5 HOH A 120 420 22 HOH HOH . 
E 5 HOH A 121 421 100 HOH HOH . 
E 5 HOH A 122 422 150 HOH HOH . 
E 5 HOH A 123 423 306 HOH HOH . 
E 5 HOH A 124 424 357 HOH HOH . 
E 5 HOH A 125 425 32 HOH HOH . 
E 5 HOH A 126 426 102 HOH HOH . 
E 5 HOH A 127 427 63 HOH HOH . 
E 5 HOH A 128 428 62 HOH HOH . 
E 5 HOH A 129 429 3 HOH HOH . 
E 5 HOH A 130 430 50 HOH HOH . 
E 5 HOH A 131 431 321 HOH HOH . 
E 5 HOH A 132 432 261 HOH HOH . 
E 5 HOH A 133 433 279 HOH HOH . 
E 5 HOH A 134 434 347 HOH HOH . 
E 5 HOH A 135 435 324 HOH HOH . 
E 5 HOH A 136 436 40 HOH HOH . 
E 5 HOH A 137 437 326 HOH HOH . 
E 5 HOH A 138 438 358 HOH HOH . 
E 5 HOH A 139 439 163 HOH HOH . 
E 5 HOH A 140 440 116 HOH HOH . 
E 5 HOH A 141 441 212 HOH HOH . 
E 5 HOH A 142 442 205 HOH HOH . 
E 5 HOH A 143 443 71 HOH HOH . 
E 5 HOH A 144 444 56 HOH HOH . 
E 5 HOH A 145 445 210 HOH HOH . 
E 5 HOH A 146 446 207 HOH HOH . 
E 5 HOH A 147 447 114 HOH HOH . 
E 5 HOH A 148 448 355 HOH HOH . 
E 5 HOH A 149 449 34 HOH HOH . 
E 5 HOH A 150 450 121 HOH HOH . 
E 5 HOH A 151 451 84 HOH HOH . 
E 5 HOH A 152 452 340 HOH HOH . 
E 5 HOH A 153 453 353 HOH HOH . 
E 5 HOH A 154 454 360 HOH HOH . 
E 5 HOH A 155 455 282 HOH HOH . 
E 5 HOH A 156 456 319 HOH HOH . 
E 5 HOH A 157 457 140 HOH HOH . 
E 5 HOH A 158 458 269 HOH HOH . 
E 5 HOH A 159 459 37 HOH HOH . 
E 5 HOH A 160 460 115 HOH HOH . 
E 5 HOH A 161 461 217 HOH HOH . 
E 5 HOH A 162 462 176 HOH HOH . 
E 5 HOH A 163 463 320 HOH HOH . 
E 5 HOH A 164 464 208 HOH HOH . 
E 5 HOH A 165 465 344 HOH HOH . 
E 5 HOH A 166 466 27 HOH HOH . 
E 5 HOH A 167 467 128 HOH HOH . 
E 5 HOH A 168 468 213 HOH HOH . 
E 5 HOH A 169 469 224 HOH HOH . 
E 5 HOH A 170 470 57 HOH HOH . 
E 5 HOH A 171 471 334 HOH HOH . 
E 5 HOH A 172 472 35 HOH HOH . 
E 5 HOH A 173 473 356 HOH HOH . 
E 5 HOH A 174 474 215 HOH HOH . 
E 5 HOH A 175 475 332 HOH HOH . 
E 5 HOH A 176 476 44 HOH HOH . 
E 5 HOH A 177 477 348 HOH HOH . 
E 5 HOH A 178 478 354 HOH HOH . 
E 5 HOH A 179 479 90 HOH HOH . 
E 5 HOH A 180 480 88 HOH HOH . 
E 5 HOH A 181 481 221 HOH HOH . 
E 5 HOH A 182 482 85 HOH HOH . 
E 5 HOH A 183 483 66 HOH HOH . 
E 5 HOH A 184 484 333 HOH HOH . 
E 5 HOH A 185 485 346 HOH HOH . 
E 5 HOH A 186 486 152 HOH HOH . 
E 5 HOH A 187 487 94 HOH HOH . 
E 5 HOH A 188 488 158 HOH HOH . 
E 5 HOH A 189 489 209 HOH HOH . 
E 5 HOH A 190 490 129 HOH HOH . 
E 5 HOH A 191 491 123 HOH HOH . 
E 5 HOH A 192 492 351 HOH HOH . 
E 5 HOH A 193 493 51 HOH HOH . 
E 5 HOH A 194 494 95 HOH HOH . 
E 5 HOH A 195 495 335 HOH HOH . 
E 5 HOH A 196 496 41 HOH HOH . 
E 5 HOH A 197 497 317 HOH HOH . 
E 5 HOH A 198 498 327 HOH HOH . 
E 5 HOH A 199 499 165 HOH HOH . 
E 5 HOH A 200 500 288 HOH HOH . 
E 5 HOH A 201 501 206 HOH HOH . 
E 5 HOH A 202 502 124 HOH HOH . 
E 5 HOH A 203 503 178 HOH HOH . 
E 5 HOH A 204 504 316 HOH HOH . 
E 5 HOH A 205 505 139 HOH HOH . 
E 5 HOH A 206 506 54 HOH HOH . 
E 5 HOH A 207 507 341 HOH HOH . 
E 5 HOH A 208 508 225 HOH HOH . 
E 5 HOH A 209 509 359 HOH HOH . 
E 5 HOH A 210 510 211 HOH HOH . 
E 5 HOH A 211 511 113 HOH HOH . 
E 5 HOH A 212 512 339 HOH HOH . 
E 5 HOH A 213 513 342 HOH HOH . 
E 5 HOH A 214 514 318 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . C . D 4 31.429 -34.603 0.837 0.75 26.13 ? C1 GOL 203 A 1 
HETATM 2 O O1 GOL . C . D 4 32.118 -34.828 2.069 0.75 30.63 ? O1 GOL 203 A 1 
HETATM 3 C C2 GOL . C . D 4 32.314 -33.996 -0.253 0.75 25.64 ? C2 GOL 203 A 1 
HETATM 4 O O2 GOL . C . D 4 33.516 -33.49 0.332 0.75 30.61 ? O2 GOL 203 A 1 
HETATM 5 C C3 GOL . C . D 4 31.49 -32.922 -0.973 0.75 25.35 ? C3 GOL 203 A 1 
HETATM 6 O O3 GOL . C . D 4 32.122 -32.066 -1.954 0.75 24.91 ? O3 GOL 203 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#