data_5NHH # _model_server_result.job_id SapHlmJ-WE76QodRUj395Q _model_server_result.datetime_utc '2024-12-22 01:52:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nhh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 5NHH # _exptl.entry_id 5NHH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 371.434 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(2-methoxyethyl)-2-[2-(oxan-4-ylamino)pyrimidin-4-yl]-6,7-dihydro-1~{H}-pyrrolo[3,2-c]pyridin-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.81 _cell.angle_gamma 90 _cell.entry_id 5NHH _cell.length_a 48.85 _cell.length_b 70.49 _cell.length_c 61.46 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NHH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H25 N5 O3' _chem_comp.formula_weight 371.434 _chem_comp.id 8XH _chem_comp.mon_nstd_flag . _chem_comp.name 5-(2-methoxyethyl)-2-[2-(oxan-4-ylamino)pyrimidin-4-yl]-6,7-dihydro-1~{H}-pyrrolo[3,2-c]pyridin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O 8XH sing 1 n n O C1 8XH sing 2 n n C1 C2 8XH sing 3 n n O2 C18 8XH doub 4 n n C7 C6 8XH sing 5 n y C7 C8 8XH doub 6 n y C18 C6 8XH sing 7 n n C18 N 8XH sing 8 n n C10 C11 8XH doub 9 n y C10 C9 8XH sing 10 n y C2 N 8XH sing 11 n n C11 N2 8XH sing 12 n y C6 C5 8XH doub 13 n y N C3 8XH sing 14 n n C8 C9 8XH sing 15 n n C8 N1 8XH sing 16 n y C9 N3 8XH doub 17 n y N2 C12 8XH doub 18 n y C3 C4 8XH sing 19 n n C5 N1 8XH sing 20 n y C5 C4 8XH sing 21 n n N3 C12 8XH sing 22 n y C12 N4 8XH sing 23 n n N4 C13 8XH sing 24 n n C13 C17 8XH sing 25 n n C13 C14 8XH sing 26 n n C17 C16 8XH sing 27 n n C16 O1 8XH sing 28 n n C14 C15 8XH sing 29 n n C15 O1 8XH sing 30 n n C1 H1 8XH sing 31 n n C1 H2 8XH sing 32 n n C2 H3 8XH sing 33 n n C2 H4 8XH sing 34 n n C3 H5 8XH sing 35 n n C3 H6 8XH sing 36 n n C7 H7 8XH sing 37 n n C10 H8 8XH sing 38 n n C11 H9 8XH sing 39 n n C13 H10 8XH sing 40 n n C14 H11 8XH sing 41 n n C14 H12 8XH sing 42 n n C15 H13 8XH sing 43 n n C15 H14 8XH sing 44 n n C16 H15 8XH sing 45 n n C16 H16 8XH sing 46 n n C H17 8XH sing 47 n n C H18 8XH sing 48 n n C H19 8XH sing 49 n n N1 H20 8XH sing 50 n n C4 H21 8XH sing 51 n n C4 H22 8XH sing 52 n n N4 H23 8XH sing 53 n n C17 H24 8XH sing 54 n n C17 H25 8XH sing 55 n n # _atom_sites.entry_id 5NHH _atom_sites.fract_transf_matrix[1][1] 0.020471 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008192 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014186 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 1 SO4 SO4 . C 2 SO4 A 1 402 2 SO4 SO4 . D 2 SO4 A 1 403 3 SO4 SO4 . E 3 8XH A 1 404 1 8XH INH . F 4 HOH A 1 501 160 HOH HOH . F 4 HOH A 2 502 34 HOH HOH . F 4 HOH A 3 503 255 HOH HOH . F 4 HOH A 4 504 105 HOH HOH . F 4 HOH A 5 505 223 HOH HOH . F 4 HOH A 6 506 4 HOH HOH . F 4 HOH A 7 507 11 HOH HOH . F 4 HOH A 8 508 53 HOH HOH . F 4 HOH A 9 509 225 HOH HOH . F 4 HOH A 10 510 121 HOH HOH . F 4 HOH A 11 511 117 HOH HOH . F 4 HOH A 12 512 12 HOH HOH . F 4 HOH A 13 513 232 HOH HOH . F 4 HOH A 14 514 150 HOH HOH . F 4 HOH A 15 515 110 HOH HOH . F 4 HOH A 16 516 42 HOH HOH . F 4 HOH A 17 517 224 HOH HOH . F 4 HOH A 18 518 250 HOH HOH . F 4 HOH A 19 519 258 HOH HOH . F 4 HOH A 20 520 77 HOH HOH . F 4 HOH A 21 521 26 HOH HOH . F 4 HOH A 22 522 131 HOH HOH . F 4 HOH A 23 523 214 HOH HOH . F 4 HOH A 24 524 199 HOH HOH . F 4 HOH A 25 525 36 HOH HOH . F 4 HOH A 26 526 87 HOH HOH . F 4 HOH A 27 527 98 HOH HOH . F 4 HOH A 28 528 211 HOH HOH . F 4 HOH A 29 529 23 HOH HOH . F 4 HOH A 30 530 123 HOH HOH . F 4 HOH A 31 531 100 HOH HOH . F 4 HOH A 32 532 62 HOH HOH . F 4 HOH A 33 533 111 HOH HOH . F 4 HOH A 34 534 31 HOH HOH . F 4 HOH A 35 535 142 HOH HOH . F 4 HOH A 36 536 30 HOH HOH . F 4 HOH A 37 537 10 HOH HOH . F 4 HOH A 38 538 88 HOH HOH . F 4 HOH A 39 539 209 HOH HOH . F 4 HOH A 40 540 185 HOH HOH . F 4 HOH A 41 541 139 HOH HOH . F 4 HOH A 42 542 236 HOH HOH . F 4 HOH A 43 543 104 HOH HOH . F 4 HOH A 44 544 155 HOH HOH . F 4 HOH A 45 545 164 HOH HOH . F 4 HOH A 46 546 249 HOH HOH . F 4 HOH A 47 547 55 HOH HOH . F 4 HOH A 48 548 25 HOH HOH . F 4 HOH A 49 549 103 HOH HOH . F 4 HOH A 50 550 92 HOH HOH . F 4 HOH A 51 551 141 HOH HOH . F 4 HOH A 52 552 183 HOH HOH . F 4 HOH A 53 553 207 HOH HOH . F 4 HOH A 54 554 38 HOH HOH . F 4 HOH A 55 555 222 HOH HOH . F 4 HOH A 56 556 210 HOH HOH . F 4 HOH A 57 557 109 HOH HOH . F 4 HOH A 58 558 146 HOH HOH . F 4 HOH A 59 559 116 HOH HOH . F 4 HOH A 60 560 138 HOH HOH . F 4 HOH A 61 561 205 HOH HOH . F 4 HOH A 62 562 200 HOH HOH . F 4 HOH A 63 563 212 HOH HOH . F 4 HOH A 64 564 188 HOH HOH . F 4 HOH A 65 565 17 HOH HOH . F 4 HOH A 66 566 18 HOH HOH . F 4 HOH A 67 567 233 HOH HOH . F 4 HOH A 68 568 166 HOH HOH . F 4 HOH A 69 569 256 HOH HOH . F 4 HOH A 70 570 127 HOH HOH . F 4 HOH A 71 571 80 HOH HOH . F 4 HOH A 72 572 29 HOH HOH . F 4 HOH A 73 573 22 HOH HOH . F 4 HOH A 74 574 54 HOH HOH . F 4 HOH A 75 575 85 HOH HOH . F 4 HOH A 76 576 252 HOH HOH . F 4 HOH A 77 577 169 HOH HOH . F 4 HOH A 78 578 44 HOH HOH . F 4 HOH A 79 579 83 HOH HOH . F 4 HOH A 80 580 67 HOH HOH . F 4 HOH A 81 581 47 HOH HOH . F 4 HOH A 82 582 186 HOH HOH . F 4 HOH A 83 583 102 HOH HOH . F 4 HOH A 84 584 64 HOH HOH . F 4 HOH A 85 585 228 HOH HOH . F 4 HOH A 86 586 70 HOH HOH . F 4 HOH A 87 587 192 HOH HOH . F 4 HOH A 88 588 72 HOH HOH . F 4 HOH A 89 589 163 HOH HOH . F 4 HOH A 90 590 56 HOH HOH . F 4 HOH A 91 591 84 HOH HOH . F 4 HOH A 92 592 86 HOH HOH . F 4 HOH A 93 593 91 HOH HOH . F 4 HOH A 94 594 3 HOH HOH . F 4 HOH A 95 595 24 HOH HOH . F 4 HOH A 96 596 203 HOH HOH . F 4 HOH A 97 597 178 HOH HOH . F 4 HOH A 98 598 235 HOH HOH . F 4 HOH A 99 599 145 HOH HOH . F 4 HOH A 100 600 75 HOH HOH . F 4 HOH A 101 601 122 HOH HOH . F 4 HOH A 102 602 168 HOH HOH . F 4 HOH A 103 603 133 HOH HOH . F 4 HOH A 104 604 147 HOH HOH . F 4 HOH A 105 605 49 HOH HOH . F 4 HOH A 106 606 125 HOH HOH . F 4 HOH A 107 607 108 HOH HOH . F 4 HOH A 108 608 254 HOH HOH . F 4 HOH A 109 609 165 HOH HOH . F 4 HOH A 110 610 73 HOH HOH . F 4 HOH A 111 611 90 HOH HOH . F 4 HOH A 112 612 112 HOH HOH . F 4 HOH A 113 613 19 HOH HOH . F 4 HOH A 114 614 153 HOH HOH . F 4 HOH A 115 615 93 HOH HOH . F 4 HOH A 116 616 50 HOH HOH . F 4 HOH A 117 617 251 HOH HOH . F 4 HOH A 118 618 176 HOH HOH . F 4 HOH A 119 619 37 HOH HOH . F 4 HOH A 120 620 16 HOH HOH . F 4 HOH A 121 621 119 HOH HOH . F 4 HOH A 122 622 101 HOH HOH . F 4 HOH A 123 623 241 HOH HOH . F 4 HOH A 124 624 40 HOH HOH . F 4 HOH A 125 625 66 HOH HOH . F 4 HOH A 126 626 144 HOH HOH . F 4 HOH A 127 627 106 HOH HOH . F 4 HOH A 128 628 74 HOH HOH . F 4 HOH A 129 629 76 HOH HOH . F 4 HOH A 130 630 52 HOH HOH . F 4 HOH A 131 631 32 HOH HOH . F 4 HOH A 132 632 130 HOH HOH . F 4 HOH A 133 633 167 HOH HOH . F 4 HOH A 134 634 14 HOH HOH . F 4 HOH A 135 635 231 HOH HOH . F 4 HOH A 136 636 161 HOH HOH . F 4 HOH A 137 637 179 HOH HOH . F 4 HOH A 138 638 58 HOH HOH . F 4 HOH A 139 639 15 HOH HOH . F 4 HOH A 140 640 113 HOH HOH . F 4 HOH A 141 641 6 HOH HOH . F 4 HOH A 142 642 21 HOH HOH . F 4 HOH A 143 643 126 HOH HOH . F 4 HOH A 144 644 114 HOH HOH . F 4 HOH A 145 645 39 HOH HOH . F 4 HOH A 146 646 187 HOH HOH . F 4 HOH A 147 647 246 HOH HOH . F 4 HOH A 148 648 82 HOH HOH . F 4 HOH A 149 649 220 HOH HOH . F 4 HOH A 150 650 253 HOH HOH . F 4 HOH A 151 651 135 HOH HOH . F 4 HOH A 152 652 229 HOH HOH . F 4 HOH A 153 653 170 HOH HOH . F 4 HOH A 154 654 60 HOH HOH . F 4 HOH A 155 655 234 HOH HOH . F 4 HOH A 156 656 198 HOH HOH . F 4 HOH A 157 657 184 HOH HOH . F 4 HOH A 158 658 194 HOH HOH . F 4 HOH A 159 659 140 HOH HOH . F 4 HOH A 160 660 248 HOH HOH . F 4 HOH A 161 661 189 HOH HOH . F 4 HOH A 162 662 51 HOH HOH . F 4 HOH A 163 663 8 HOH HOH . F 4 HOH A 164 664 143 HOH HOH . F 4 HOH A 165 665 69 HOH HOH . F 4 HOH A 166 666 162 HOH HOH . F 4 HOH A 167 667 63 HOH HOH . F 4 HOH A 168 668 57 HOH HOH . F 4 HOH A 169 669 238 HOH HOH . F 4 HOH A 170 670 230 HOH HOH . F 4 HOH A 171 671 237 HOH HOH . F 4 HOH A 172 672 118 HOH HOH . F 4 HOH A 173 673 45 HOH HOH . F 4 HOH A 174 674 48 HOH HOH . F 4 HOH A 175 675 240 HOH HOH . F 4 HOH A 176 676 43 HOH HOH . F 4 HOH A 177 677 94 HOH HOH . F 4 HOH A 178 678 79 HOH HOH . F 4 HOH A 179 679 59 HOH HOH . F 4 HOH A 180 680 120 HOH HOH . F 4 HOH A 181 681 201 HOH HOH . F 4 HOH A 182 682 208 HOH HOH . F 4 HOH A 183 683 182 HOH HOH . F 4 HOH A 184 684 172 HOH HOH . F 4 HOH A 185 685 158 HOH HOH . F 4 HOH A 186 686 132 HOH HOH . F 4 HOH A 187 687 226 HOH HOH . F 4 HOH A 188 688 245 HOH HOH . F 4 HOH A 189 689 173 HOH HOH . F 4 HOH A 190 690 196 HOH HOH . F 4 HOH A 191 691 152 HOH HOH . F 4 HOH A 192 692 257 HOH HOH . F 4 HOH A 193 693 213 HOH HOH . F 4 HOH A 194 694 99 HOH HOH . F 4 HOH A 195 695 247 HOH HOH . F 4 HOH A 196 696 97 HOH HOH . F 4 HOH A 197 697 96 HOH HOH . F 4 HOH A 198 698 239 HOH HOH . F 4 HOH A 199 699 156 HOH HOH . F 4 HOH A 200 700 41 HOH HOH . F 4 HOH A 201 701 115 HOH HOH . F 4 HOH A 202 702 177 HOH HOH . F 4 HOH A 203 703 124 HOH HOH . F 4 HOH A 204 704 95 HOH HOH . F 4 HOH A 205 705 244 HOH HOH . F 4 HOH A 206 706 33 HOH HOH . F 4 HOH A 207 707 107 HOH HOH . F 4 HOH A 208 708 219 HOH HOH . F 4 HOH A 209 709 197 HOH HOH . F 4 HOH A 210 710 243 HOH HOH . F 4 HOH A 211 711 202 HOH HOH . F 4 HOH A 212 712 89 HOH HOH . F 4 HOH A 213 713 181 HOH HOH . F 4 HOH A 214 714 35 HOH HOH . F 4 HOH A 215 715 195 HOH HOH . F 4 HOH A 216 716 159 HOH HOH . F 4 HOH A 217 717 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8XH . . . E 3 -10.07 15.543 39.466 1 30.76 ? C1 8XH 404 A 1 HETATM 2 C C2 8XH . . . E 3 -10.39 14.415 40.429 1 26.42 ? C2 8XH 404 A 1 HETATM 3 C C3 8XH . . . E 3 -12.39 15.453 41.503 1 28.83 ? C3 8XH 404 A 1 HETATM 4 C C7 8XH . . . E 3 -14.996 12.378 40.238 1 21.53 ? C7 8XH 404 A 1 HETATM 5 C C8 8XH . . . E 3 -16.123 12.783 40.925 1 20.98 ? C8 8XH 404 A 1 HETATM 6 C C9 8XH . . . E 3 -17.498 12.275 40.944 1 22.51 ? C9 8XH 404 A 1 HETATM 7 C C10 8XH . . . E 3 -17.854 11.086 40.317 1 22.39 ? C10 8XH 404 A 1 HETATM 8 C C11 8XH . . . E 3 -19.169 10.679 40.471 1 23.37 ? C11 8XH 404 A 1 HETATM 9 C C12 8XH . . . E 3 -19.648 12.544 41.685 1 22.9 ? C12 8XH 404 A 1 HETATM 10 C C13 8XH . . . E 3 -20.338 14.594 42.996 1 23.98 ? C13 8XH 404 A 1 HETATM 11 C C14 8XH . . . E 3 -19.713 14.475 44.381 1 23.96 ? C14 8XH 404 A 1 HETATM 12 C C15 8XH . . . E 3 -19.583 15.853 45 1 25.49 ? C15 8XH 404 A 1 HETATM 13 C C16 8XH . . . E 3 -21.427 16.705 43.781 1 24.23 ? C16 8XH 404 A 1 HETATM 14 O O2 8XH . . . E 3 -12.027 12.324 39.685 1 23.86 ? O2 8XH 404 A 1 HETATM 15 C C18 8XH . . . E 3 -12.533 13.257 40.297 1 23.42 ? C18 8XH 404 A 1 HETATM 16 N N 8XH . . . E 3 -11.817 14.309 40.765 1 25.37 ? N 8XH 404 A 1 HETATM 17 O O 8XH . . . E 3 -10.986 15.476 38.392 1 32.44 ? O 8XH 404 A 1 HETATM 18 C C 8XH . . . E 3 -10.925 16.616 37.567 1 34.48 ? C 8XH 404 A 1 HETATM 19 C C6 8XH . . . E 3 -13.927 13.224 40.663 1 21.94 ? C6 8XH 404 A 1 HETATM 20 N N1 8XH . . . E 3 -15.776 13.834 41.739 1 25.04 ? N1 8XH 404 A 1 HETATM 21 C C5 8XH . . . E 3 -14.441 14.104 41.572 1 25.59 ? C5 8XH 404 A 1 HETATM 22 C C4 8XH . . . E 3 -13.656 15.143 42.292 1 29.41 ? C4 8XH 404 A 1 HETATM 23 N N3 8XH . . . E 3 -18.382 13.019 41.626 1 22.01 ? N3 8XH 404 A 1 HETATM 24 N N2 8XH . . . E 3 -20.089 11.39 41.149 1 22.33 ? N2 8XH 404 A 1 HETATM 25 N N4 8XH . . . E 3 -20.551 13.28 42.371 1 23 ? N4 8XH 404 A 1 HETATM 26 C C17 8XH . . . E 3 -21.639 15.393 43.059 1 24.13 ? C17 8XH 404 A 1 HETATM 27 O O1 8XH . . . E 3 -20.865 16.499 45.095 1 25.68 ? O1 8XH 404 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #