data_5NHL # _model_server_result.job_id AMQGGUEu3mheAQiBr0rr3A _model_server_result.datetime_utc '2024-12-22 02:23:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nhl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5NHL # _exptl.entry_id 5NHL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 395.458 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6~{R})-5-(2-methoxyethyl)-6-methyl-2-[5-methyl-2-[(2-methylpyrazol-3-yl)amino]pyrimidin-4-yl]-6,7-dihydro-1~{H}-pyrrolo[3,2-c]pyridin-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.05 _cell.angle_gamma 90 _cell.entry_id 5NHL _cell.length_a 48.91 _cell.length_b 71.34 _cell.length_c 61.16 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NHL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H25 N7 O2' _chem_comp.formula_weight 395.458 _chem_comp.id 8XB _chem_comp.mon_nstd_flag . _chem_comp.name (6~{R})-5-(2-methoxyethyl)-6-methyl-2-[5-methyl-2-[(2-methylpyrazol-3-yl)amino]pyrimidin-4-yl]-6,7-dihydro-1~{H}-pyrrolo[3,2-c]pyridin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 O2 8XB sing 1 n n O2 C5 8XB sing 2 n n O1 C1 8XB doub 3 n n C5 C4 8XB sing 4 n n C14 C13 8XB sing 5 n n C1 C2 8XB sing 6 n n C1 N1 8XB sing 7 n n C3 C2 8XB sing 8 n y C3 C11 8XB doub 9 n y C4 N1 8XB sing 10 n n C13 C16 8XB doub 11 n y C13 C12 8XB sing 12 n y C2 C10 8XB doub 13 n y C16 N4 8XB sing 14 n y N1 C7 8XB sing 15 n n C11 C12 8XB sing 16 n n C11 N2 8XB sing 17 n y C12 N3 8XB doub 18 n y C10 N2 8XB sing 19 n y C10 C9 8XB sing 20 n n N4 C15 8XB doub 21 n y N3 C15 8XB sing 22 n y C15 N5 8XB sing 23 n n C9 C7 8XB sing 24 n n C7 C8 8XB sing 25 n n N5 C17 8XB sing 26 n n C18 N6 8XB sing 27 n n C17 N6 8XB sing 28 n y C17 C20 8XB doub 29 n y N6 N7 8XB sing 30 n y C20 C19 8XB sing 31 n y N7 C19 8XB doub 32 n y C3 H1 8XB sing 33 n n C7 H2 8XB sing 34 n n C8 H3 8XB sing 35 n n C8 H4 8XB sing 36 n n C8 H5 8XB sing 37 n n C9 H6 8XB sing 38 n n C9 H7 8XB sing 39 n n C14 H8 8XB sing 40 n n C14 H9 8XB sing 41 n n C14 H10 8XB sing 42 n n C16 H11 8XB sing 43 n n C19 H12 8XB sing 44 n n C20 H13 8XB sing 45 n n C4 H14 8XB sing 46 n n C4 H15 8XB sing 47 n n C5 H16 8XB sing 48 n n C5 H17 8XB sing 49 n n C6 H18 8XB sing 50 n n C6 H19 8XB sing 51 n n C6 H20 8XB sing 52 n n N2 H21 8XB sing 53 n n N5 H22 8XB sing 54 n n C18 H23 8XB sing 55 n n C18 H24 8XB sing 56 n n C18 H25 8XB sing 57 n n # _atom_sites.entry_id 5NHL _atom_sites.fract_transf_matrix[1][1] 0.020446 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007869 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014017 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01752 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 1 SO4 SO4 . C 3 8XB A 1 402 1 8XB INH . D 4 HOH A 1 501 128 HOH HOH . D 4 HOH A 2 502 129 HOH HOH . D 4 HOH A 3 503 38 HOH HOH . D 4 HOH A 4 504 67 HOH HOH . D 4 HOH A 5 505 6 HOH HOH . D 4 HOH A 6 506 10 HOH HOH . D 4 HOH A 7 507 83 HOH HOH . D 4 HOH A 8 508 45 HOH HOH . D 4 HOH A 9 509 127 HOH HOH . D 4 HOH A 10 510 24 HOH HOH . D 4 HOH A 11 511 26 HOH HOH . D 4 HOH A 12 512 60 HOH HOH . D 4 HOH A 13 513 1 HOH HOH . D 4 HOH A 14 514 23 HOH HOH . D 4 HOH A 15 515 28 HOH HOH . D 4 HOH A 16 516 57 HOH HOH . D 4 HOH A 17 517 91 HOH HOH . D 4 HOH A 18 518 37 HOH HOH . D 4 HOH A 19 519 126 HOH HOH . D 4 HOH A 20 520 11 HOH HOH . D 4 HOH A 21 521 13 HOH HOH . D 4 HOH A 22 522 77 HOH HOH . D 4 HOH A 23 523 31 HOH HOH . D 4 HOH A 24 524 21 HOH HOH . D 4 HOH A 25 525 55 HOH HOH . D 4 HOH A 26 526 46 HOH HOH . D 4 HOH A 27 527 101 HOH HOH . D 4 HOH A 28 528 42 HOH HOH . D 4 HOH A 29 529 79 HOH HOH . D 4 HOH A 30 530 50 HOH HOH . D 4 HOH A 31 531 9 HOH HOH . D 4 HOH A 32 532 81 HOH HOH . D 4 HOH A 33 533 99 HOH HOH . D 4 HOH A 34 534 5 HOH HOH . D 4 HOH A 35 535 118 HOH HOH . D 4 HOH A 36 536 95 HOH HOH . D 4 HOH A 37 537 30 HOH HOH . D 4 HOH A 38 538 52 HOH HOH . D 4 HOH A 39 539 14 HOH HOH . D 4 HOH A 40 540 25 HOH HOH . D 4 HOH A 41 541 74 HOH HOH . D 4 HOH A 42 542 133 HOH HOH . D 4 HOH A 43 543 56 HOH HOH . D 4 HOH A 44 544 54 HOH HOH . D 4 HOH A 45 545 134 HOH HOH . D 4 HOH A 46 546 102 HOH HOH . D 4 HOH A 47 547 18 HOH HOH . D 4 HOH A 48 548 87 HOH HOH . D 4 HOH A 49 549 93 HOH HOH . D 4 HOH A 50 550 78 HOH HOH . D 4 HOH A 51 551 106 HOH HOH . D 4 HOH A 52 552 15 HOH HOH . D 4 HOH A 53 553 61 HOH HOH . D 4 HOH A 54 554 39 HOH HOH . D 4 HOH A 55 555 53 HOH HOH . D 4 HOH A 56 556 90 HOH HOH . D 4 HOH A 57 557 63 HOH HOH . D 4 HOH A 58 558 35 HOH HOH . D 4 HOH A 59 559 76 HOH HOH . D 4 HOH A 60 560 131 HOH HOH . D 4 HOH A 61 561 19 HOH HOH . D 4 HOH A 62 562 89 HOH HOH . D 4 HOH A 63 563 80 HOH HOH . D 4 HOH A 64 564 84 HOH HOH . D 4 HOH A 65 565 132 HOH HOH . D 4 HOH A 66 566 51 HOH HOH . D 4 HOH A 67 567 122 HOH HOH . D 4 HOH A 68 568 135 HOH HOH . D 4 HOH A 69 569 48 HOH HOH . D 4 HOH A 70 570 114 HOH HOH . D 4 HOH A 71 571 16 HOH HOH . D 4 HOH A 72 572 27 HOH HOH . D 4 HOH A 73 573 75 HOH HOH . D 4 HOH A 74 574 100 HOH HOH . D 4 HOH A 75 575 94 HOH HOH . D 4 HOH A 76 576 22 HOH HOH . D 4 HOH A 77 577 82 HOH HOH . D 4 HOH A 78 578 85 HOH HOH . D 4 HOH A 79 579 109 HOH HOH . D 4 HOH A 80 580 43 HOH HOH . D 4 HOH A 81 581 33 HOH HOH . D 4 HOH A 82 582 49 HOH HOH . D 4 HOH A 83 583 105 HOH HOH . D 4 HOH A 84 584 41 HOH HOH . D 4 HOH A 85 585 73 HOH HOH . D 4 HOH A 86 586 130 HOH HOH . D 4 HOH A 87 587 137 HOH HOH . D 4 HOH A 88 588 36 HOH HOH . D 4 HOH A 89 589 120 HOH HOH . D 4 HOH A 90 590 113 HOH HOH . D 4 HOH A 91 591 124 HOH HOH . D 4 HOH A 92 592 88 HOH HOH . D 4 HOH A 93 593 40 HOH HOH . D 4 HOH A 94 594 108 HOH HOH . D 4 HOH A 95 595 97 HOH HOH . D 4 HOH A 96 596 117 HOH HOH . D 4 HOH A 97 597 116 HOH HOH . D 4 HOH A 98 598 96 HOH HOH . D 4 HOH A 99 599 136 HOH HOH . D 4 HOH A 100 600 72 HOH HOH . D 4 HOH A 101 601 107 HOH HOH . D 4 HOH A 102 602 64 HOH HOH . D 4 HOH A 103 603 119 HOH HOH . D 4 HOH A 104 604 103 HOH HOH . D 4 HOH A 105 605 92 HOH HOH . D 4 HOH A 106 606 69 HOH HOH . D 4 HOH A 107 607 112 HOH HOH . D 4 HOH A 108 608 98 HOH HOH . D 4 HOH A 109 609 121 HOH HOH . D 4 HOH A 110 610 59 HOH HOH . D 4 HOH A 111 611 66 HOH HOH . D 4 HOH A 112 612 125 HOH HOH . D 4 HOH A 113 613 29 HOH HOH . D 4 HOH A 114 614 62 HOH HOH . D 4 HOH A 115 615 86 HOH HOH . D 4 HOH A 116 616 44 HOH HOH . D 4 HOH A 117 617 104 HOH HOH . D 4 HOH A 118 618 34 HOH HOH . D 4 HOH A 119 619 71 HOH HOH . D 4 HOH A 120 620 70 HOH HOH . D 4 HOH A 121 621 20 HOH HOH . D 4 HOH A 122 622 110 HOH HOH . D 4 HOH A 123 623 58 HOH HOH . D 4 HOH A 124 624 65 HOH HOH . D 4 HOH A 125 625 68 HOH HOH . D 4 HOH A 126 626 111 HOH HOH . D 4 HOH A 127 627 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8XB . . . C 3 -11.976 13.466 40.241 1 36.02 ? C1 8XB 402 A 1 HETATM 2 C C2 8XB . . . C 3 -13.365 13.367 40.655 1 35.67 ? C2 8XB 402 A 1 HETATM 3 C C3 8XB . . . C 3 -14.349 12.382 40.405 1 36.44 ? C3 8XB 402 A 1 HETATM 4 N N6 8XB . . . C 3 -20.405 15.36 43.786 1 40.43 ? N6 8XB 402 A 1 HETATM 5 C C7 8XB . . . C 3 -11.698 15.184 42.079 1 34.5 ? C7 8XB 402 A 1 HETATM 6 C C8 8XB . . . C 3 -11.335 14.457 43.372 1 33.46 ? C8 8XB 402 A 1 HETATM 7 C C9 8XB . . . C 3 -13.226 15.519 41.971 1 34.48 ? C9 8XB 402 A 1 HETATM 8 C C10 8XB . . . C 3 -13.95 14.323 41.438 1 34.22 ? C10 8XB 402 A 1 HETATM 9 C C11 8XB . . . C 3 -15.513 12.776 41.044 1 35.38 ? C11 8XB 402 A 1 HETATM 10 C C12 8XB . . . C 3 -16.866 12.222 41.15 1 36.74 ? C12 8XB 402 A 1 HETATM 11 C C13 8XB . . . C 3 -17.295 11.025 40.556 1 35.01 ? C13 8XB 402 A 1 HETATM 12 C C14 8XB . . . C 3 -16.409 10.11 39.742 1 31.03 ? C14 8XB 402 A 1 HETATM 13 C C15 8XB . . . C 3 -18.985 12.564 41.963 1 35.19 ? C15 8XB 402 A 1 HETATM 14 C C16 8XB . . . C 3 -18.631 10.702 40.762 1 32.73 ? C16 8XB 402 A 1 HETATM 15 C C19 8XB . . . C 3 -18.73 15.809 45.034 1 42.98 ? C19 8XB 402 A 1 HETATM 16 C C20 8XB . . . C 3 -18.448 14.584 44.45 1 42.38 ? C20 8XB 402 A 1 HETATM 17 O O1 8XB . . . C 3 -11.47 12.614 39.526 1 37.19 ? O1 8XB 402 A 1 HETATM 18 N N1 8XB . . . C 3 -11.234 14.454 40.848 1 36.98 ? N1 8XB 402 A 1 HETATM 19 C C4 8XB . . . C 3 -9.844 14.654 40.406 1 39.54 ? C4 8XB 402 A 1 HETATM 20 C C5 8XB . . . C 3 -9.617 15.905 39.577 1 45.41 ? C5 8XB 402 A 1 HETATM 21 O O2 8XB . . . C 3 -10.123 15.735 38.24 1 47.11 ? O2 8XB 402 A 1 HETATM 22 C C6 8XB . . . C 3 -10.803 16.931 37.855 1 46.25 ? C6 8XB 402 A 1 HETATM 23 N N2 8XB . . . C 3 -15.24 13.956 41.705 1 32.4 ? N2 8XB 402 A 1 HETATM 24 N N3 8XB . . . C 3 -17.707 13.004 41.845 1 35.69 ? N3 8XB 402 A 1 HETATM 25 N N4 8XB . . . C 3 -19.492 11.436 41.456 1 31.85 ? N4 8XB 402 A 1 HETATM 26 N N5 8XB . . . C 3 -19.836 13.296 42.773 1 38.48 ? N5 8XB 402 A 1 HETATM 27 C C17 8XB . . . C 3 -19.544 14.328 43.654 1 40.39 ? C17 8XB 402 A 1 HETATM 28 C C18 8XB . . . C 3 -21.703 15.567 43.143 1 36.29 ? C18 8XB 402 A 1 HETATM 29 N N7 8XB . . . C 3 -19.927 16.282 44.679 1 42.1 ? N7 8XB 402 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #