data_5NHP # _model_server_result.job_id mFhIMDiu2cQQPaXYQxF6IA _model_server_result.datetime_utc '2024-10-11 02:28:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nhp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5NHP # _exptl.entry_id 5NHP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.432 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(2-methoxyethyl)-1-methyl-2-[2-[(2-methylpyrazol-3-yl)amino]pyrimidin-4-yl]-6,7-dihydropyrrolo[3,2-c]pyridin-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.03 _cell.angle_gamma 90 _cell.entry_id 5NHP _cell.length_a 48.791 _cell.length_b 71.115 _cell.length_c 61.032 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NHP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H23 N7 O2' _chem_comp.formula_weight 381.432 _chem_comp.id 8XK _chem_comp.mon_nstd_flag . _chem_comp.name 5-(2-methoxyethyl)-1-methyl-2-[2-[(2-methylpyrazol-3-yl)amino]pyrimidin-4-yl]-6,7-dihydropyrrolo[3,2-c]pyridin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 O1 8XK sing 1 n n O1 C17 8XK sing 2 n n C17 C16 8XK sing 3 n n O C15 8XK doub 4 n n C16 N6 8XK sing 5 n n C15 C10 8XK sing 6 n n C15 N6 8XK sing 7 n n C6 C5 8XK doub 8 n y C6 C7 8XK sing 9 n y C5 N3 8XK sing 10 n y C9 C10 8XK sing 11 n y C9 C8 8XK doub 12 n y C10 C11 8XK doub 13 n y N6 C14 8XK sing 14 n n C8 C7 8XK sing 15 n n C8 N5 8XK sing 16 n y C7 N4 8XK doub 17 n y C11 N5 8XK sing 18 n y C11 C13 8XK sing 19 n n N3 C4 8XK doub 20 n y N5 C12 8XK sing 21 n n C13 C14 8XK sing 22 n n N4 C4 8XK sing 23 n y C4 N2 8XK sing 24 n n N2 C1 8XK sing 25 n n C N 8XK sing 26 n n C1 N 8XK sing 27 n y C1 C2 8XK doub 28 n y N N1 8XK sing 29 n y C2 C3 8XK sing 30 n y N1 C3 8XK doub 31 n y C2 H1 8XK sing 32 n n C3 H2 8XK sing 33 n n C9 H3 8XK sing 34 n n C12 H4 8XK sing 35 n n C12 H5 8XK sing 36 n n C12 H6 8XK sing 37 n n C13 H7 8XK sing 38 n n C13 H8 8XK sing 39 n n C14 H9 8XK sing 40 n n C14 H10 8XK sing 41 n n C16 H11 8XK sing 42 n n C16 H12 8XK sing 43 n n C17 H13 8XK sing 44 n n C17 H14 8XK sing 45 n n C18 H15 8XK sing 46 n n C18 H16 8XK sing 47 n n C18 H17 8XK sing 48 n n C6 H18 8XK sing 49 n n C5 H19 8XK sing 50 n n N2 H20 8XK sing 51 n n C H21 8XK sing 52 n n C H22 8XK sing 53 n n C H23 8XK sing 54 n n # _atom_sites.entry_id 5NHP _atom_sites.fract_transf_matrix[1][1] 0.020496 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00788 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014062 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017554 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 1 SO4 SO4 . C 2 SO4 A 1 402 2 SO4 SO4 . D 3 8XK A 1 403 1 8XK INH . E 4 HOH A 1 501 194 HOH HOH . E 4 HOH A 2 502 139 HOH HOH . E 4 HOH A 3 503 195 HOH HOH . E 4 HOH A 4 504 190 HOH HOH . E 4 HOH A 5 505 32 HOH HOH . E 4 HOH A 6 506 135 HOH HOH . E 4 HOH A 7 507 101 HOH HOH . E 4 HOH A 8 508 102 HOH HOH . E 4 HOH A 9 509 210 HOH HOH . E 4 HOH A 10 510 15 HOH HOH . E 4 HOH A 11 511 197 HOH HOH . E 4 HOH A 12 512 63 HOH HOH . E 4 HOH A 13 513 93 HOH HOH . E 4 HOH A 14 514 188 HOH HOH . E 4 HOH A 15 515 45 HOH HOH . E 4 HOH A 16 516 73 HOH HOH . E 4 HOH A 17 517 133 HOH HOH . E 4 HOH A 18 518 189 HOH HOH . E 4 HOH A 19 519 62 HOH HOH . E 4 HOH A 20 520 138 HOH HOH . E 4 HOH A 21 521 88 HOH HOH . E 4 HOH A 22 522 212 HOH HOH . E 4 HOH A 23 523 123 HOH HOH . E 4 HOH A 24 524 67 HOH HOH . E 4 HOH A 25 525 107 HOH HOH . E 4 HOH A 26 526 191 HOH HOH . E 4 HOH A 27 527 68 HOH HOH . E 4 HOH A 28 528 203 HOH HOH . E 4 HOH A 29 529 192 HOH HOH . E 4 HOH A 30 530 49 HOH HOH . E 4 HOH A 31 531 98 HOH HOH . E 4 HOH A 32 532 10 HOH HOH . E 4 HOH A 33 533 108 HOH HOH . E 4 HOH A 34 534 16 HOH HOH . E 4 HOH A 35 535 66 HOH HOH . E 4 HOH A 36 536 178 HOH HOH . E 4 HOH A 37 537 213 HOH HOH . E 4 HOH A 38 538 106 HOH HOH . E 4 HOH A 39 539 30 HOH HOH . E 4 HOH A 40 540 196 HOH HOH . E 4 HOH A 41 541 18 HOH HOH . E 4 HOH A 42 542 145 HOH HOH . E 4 HOH A 43 543 148 HOH HOH . E 4 HOH A 44 544 20 HOH HOH . E 4 HOH A 45 545 186 HOH HOH . E 4 HOH A 46 546 208 HOH HOH . E 4 HOH A 47 547 19 HOH HOH . E 4 HOH A 48 548 71 HOH HOH . E 4 HOH A 49 549 38 HOH HOH . E 4 HOH A 50 550 119 HOH HOH . E 4 HOH A 51 551 64 HOH HOH . E 4 HOH A 52 552 65 HOH HOH . E 4 HOH A 53 553 85 HOH HOH . E 4 HOH A 54 554 60 HOH HOH . E 4 HOH A 55 555 47 HOH HOH . E 4 HOH A 56 556 35 HOH HOH . E 4 HOH A 57 557 118 HOH HOH . E 4 HOH A 58 558 39 HOH HOH . E 4 HOH A 59 559 134 HOH HOH . E 4 HOH A 60 560 116 HOH HOH . E 4 HOH A 61 561 103 HOH HOH . E 4 HOH A 62 562 97 HOH HOH . E 4 HOH A 63 563 202 HOH HOH . E 4 HOH A 64 564 3 HOH HOH . E 4 HOH A 65 565 122 HOH HOH . E 4 HOH A 66 566 147 HOH HOH . E 4 HOH A 67 567 126 HOH HOH . E 4 HOH A 68 568 51 HOH HOH . E 4 HOH A 69 569 61 HOH HOH . E 4 HOH A 70 570 81 HOH HOH . E 4 HOH A 71 571 141 HOH HOH . E 4 HOH A 72 572 166 HOH HOH . E 4 HOH A 73 573 55 HOH HOH . E 4 HOH A 74 574 7 HOH HOH . E 4 HOH A 75 575 76 HOH HOH . E 4 HOH A 76 576 21 HOH HOH . E 4 HOH A 77 577 167 HOH HOH . E 4 HOH A 78 578 87 HOH HOH . E 4 HOH A 79 579 94 HOH HOH . E 4 HOH A 80 580 83 HOH HOH . E 4 HOH A 81 581 54 HOH HOH . E 4 HOH A 82 582 104 HOH HOH . E 4 HOH A 83 583 48 HOH HOH . E 4 HOH A 84 584 1 HOH HOH . E 4 HOH A 85 585 26 HOH HOH . E 4 HOH A 86 586 72 HOH HOH . E 4 HOH A 87 587 169 HOH HOH . E 4 HOH A 88 588 140 HOH HOH . E 4 HOH A 89 589 46 HOH HOH . E 4 HOH A 90 590 170 HOH HOH . E 4 HOH A 91 591 23 HOH HOH . E 4 HOH A 92 592 131 HOH HOH . E 4 HOH A 93 593 95 HOH HOH . E 4 HOH A 94 594 105 HOH HOH . E 4 HOH A 95 595 6 HOH HOH . E 4 HOH A 96 596 153 HOH HOH . E 4 HOH A 97 597 25 HOH HOH . E 4 HOH A 98 598 146 HOH HOH . E 4 HOH A 99 599 159 HOH HOH . E 4 HOH A 100 600 42 HOH HOH . E 4 HOH A 101 601 13 HOH HOH . E 4 HOH A 102 602 90 HOH HOH . E 4 HOH A 103 603 43 HOH HOH . E 4 HOH A 104 604 136 HOH HOH . E 4 HOH A 105 605 100 HOH HOH . E 4 HOH A 106 606 11 HOH HOH . E 4 HOH A 107 607 22 HOH HOH . E 4 HOH A 108 608 124 HOH HOH . E 4 HOH A 109 609 40 HOH HOH . E 4 HOH A 110 610 112 HOH HOH . E 4 HOH A 111 611 27 HOH HOH . E 4 HOH A 112 612 34 HOH HOH . E 4 HOH A 113 613 185 HOH HOH . E 4 HOH A 114 614 207 HOH HOH . E 4 HOH A 115 615 56 HOH HOH . E 4 HOH A 116 616 91 HOH HOH . E 4 HOH A 117 617 74 HOH HOH . E 4 HOH A 118 618 176 HOH HOH . E 4 HOH A 119 619 31 HOH HOH . E 4 HOH A 120 620 158 HOH HOH . E 4 HOH A 121 621 155 HOH HOH . E 4 HOH A 122 622 33 HOH HOH . E 4 HOH A 123 623 132 HOH HOH . E 4 HOH A 124 624 14 HOH HOH . E 4 HOH A 125 625 206 HOH HOH . E 4 HOH A 126 626 41 HOH HOH . E 4 HOH A 127 627 162 HOH HOH . E 4 HOH A 128 628 152 HOH HOH . E 4 HOH A 129 629 110 HOH HOH . E 4 HOH A 130 630 50 HOH HOH . E 4 HOH A 131 631 128 HOH HOH . E 4 HOH A 132 632 151 HOH HOH . E 4 HOH A 133 633 24 HOH HOH . E 4 HOH A 134 634 99 HOH HOH . E 4 HOH A 135 635 214 HOH HOH . E 4 HOH A 136 636 111 HOH HOH . E 4 HOH A 137 637 183 HOH HOH . E 4 HOH A 138 638 173 HOH HOH . E 4 HOH A 139 639 209 HOH HOH . E 4 HOH A 140 640 84 HOH HOH . E 4 HOH A 141 641 204 HOH HOH . E 4 HOH A 142 642 115 HOH HOH . E 4 HOH A 143 643 142 HOH HOH . E 4 HOH A 144 644 36 HOH HOH . E 4 HOH A 145 645 59 HOH HOH . E 4 HOH A 146 646 193 HOH HOH . E 4 HOH A 147 647 199 HOH HOH . E 4 HOH A 148 648 80 HOH HOH . E 4 HOH A 149 649 161 HOH HOH . E 4 HOH A 150 650 165 HOH HOH . E 4 HOH A 151 651 144 HOH HOH . E 4 HOH A 152 652 77 HOH HOH . E 4 HOH A 153 653 125 HOH HOH . E 4 HOH A 154 654 180 HOH HOH . E 4 HOH A 155 655 37 HOH HOH . E 4 HOH A 156 656 69 HOH HOH . E 4 HOH A 157 657 198 HOH HOH . E 4 HOH A 158 658 89 HOH HOH . E 4 HOH A 159 659 175 HOH HOH . E 4 HOH A 160 660 44 HOH HOH . E 4 HOH A 161 661 113 HOH HOH . E 4 HOH A 162 662 29 HOH HOH . E 4 HOH A 163 663 28 HOH HOH . E 4 HOH A 164 664 114 HOH HOH . E 4 HOH A 165 665 121 HOH HOH . E 4 HOH A 166 666 96 HOH HOH . E 4 HOH A 167 667 164 HOH HOH . E 4 HOH A 168 668 154 HOH HOH . E 4 HOH A 169 669 70 HOH HOH . E 4 HOH A 170 670 143 HOH HOH . E 4 HOH A 171 671 177 HOH HOH . E 4 HOH A 172 672 205 HOH HOH . E 4 HOH A 173 673 82 HOH HOH . E 4 HOH A 174 674 53 HOH HOH . E 4 HOH A 175 675 57 HOH HOH . E 4 HOH A 176 676 168 HOH HOH . E 4 HOH A 177 677 117 HOH HOH . E 4 HOH A 178 678 86 HOH HOH . E 4 HOH A 179 679 150 HOH HOH . E 4 HOH A 180 680 79 HOH HOH . E 4 HOH A 181 681 130 HOH HOH . E 4 HOH A 182 682 211 HOH HOH . E 4 HOH A 183 683 201 HOH HOH . E 4 HOH A 184 684 58 HOH HOH . E 4 HOH A 185 685 160 HOH HOH . E 4 HOH A 186 686 78 HOH HOH . E 4 HOH A 187 687 187 HOH HOH . E 4 HOH A 188 688 149 HOH HOH . E 4 HOH A 189 689 171 HOH HOH . E 4 HOH A 190 690 127 HOH HOH . E 4 HOH A 191 691 174 HOH HOH . E 4 HOH A 192 692 120 HOH HOH . E 4 HOH A 193 693 181 HOH HOH . E 4 HOH A 194 694 52 HOH HOH . E 4 HOH A 195 695 182 HOH HOH . E 4 HOH A 196 696 75 HOH HOH . E 4 HOH A 197 697 129 HOH HOH . E 4 HOH A 198 698 109 HOH HOH . E 4 HOH A 199 699 172 HOH HOH . E 4 HOH A 200 700 157 HOH HOH . E 4 HOH A 201 701 156 HOH HOH . E 4 HOH A 202 702 184 HOH HOH . E 4 HOH A 203 703 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8XK . . . D 3 -19.615 14.198 43.382 1 26.62 ? C1 8XK 403 A 1 HETATM 2 C C2 8XK . . . D 3 -18.497 14.44 44.167 1 28.38 ? C2 8XK 403 A 1 HETATM 3 C C3 8XK . . . D 3 -18.766 15.659 44.782 1 28.69 ? C3 8XK 403 A 1 HETATM 4 N N6 8XK . . . D 3 -11.033 13.952 40.551 1 32.98 ? N6 8XK 403 A 1 HETATM 5 C C7 8XK . . . D 3 -16.854 12.329 40.889 1 24.87 ? C7 8XK 403 A 1 HETATM 6 C C8 8XK . . . D 3 -15.482 12.891 40.844 1 26.39 ? C8 8XK 403 A 1 HETATM 7 C C9 8XK . . . D 3 -14.368 12.199 40.405 1 25.11 ? C9 8XK 403 A 1 HETATM 8 C C10 8XK . . . D 3 -13.237 13.065 40.503 1 27.08 ? C10 8XK 403 A 1 HETATM 9 C C11 8XK . . . D 3 -13.712 14.26 41.028 1 29.56 ? C11 8XK 403 A 1 HETATM 10 C C12 8XK . . . D 3 -15.924 15.239 41.798 1 26.53 ? C12 8XK 403 A 1 HETATM 11 C C13 8XK . . . D 3 -12.845 15.437 41.354 1 33.43 ? C13 8XK 403 A 1 HETATM 12 C C14 8XK . . . D 3 -11.438 14.914 41.587 1 33.79 ? C14 8XK 403 A 1 HETATM 13 C C15 8XK . . . D 3 -11.813 12.909 40.166 1 29.62 ? C15 8XK 403 A 1 HETATM 14 C C16 8XK . . . D 3 -9.658 14.08 40.041 1 36.48 ? C16 8XK 403 A 1 HETATM 15 O O 8XK . . . D 3 -11.36 11.874 39.691 1 28.18 ? O 8XK 403 A 1 HETATM 16 C C17 8XK . . . D 3 -9.552 14.642 38.648 1 42.43 ? C17 8XK 403 A 1 HETATM 17 O O1 8XK . . . D 3 -10.175 15.902 38.626 1 47.83 ? O1 8XK 403 A 1 HETATM 18 C C18 8XK . . . D 3 -10.104 16.503 37.353 1 47.35 ? C18 8XK 403 A 1 HETATM 19 N N5 8XK . . . D 3 -15.065 14.168 41.266 1 28.1 ? N5 8XK 403 A 1 HETATM 20 C C6 8XK . . . D 3 -17.167 11.152 40.214 1 23 ? C6 8XK 403 A 1 HETATM 21 C C5 8XK . . . D 3 -18.449 10.669 40.386 1 22.28 ? C5 8XK 403 A 1 HETATM 22 N N3 8XK . . . D 3 -19.394 11.308 41.103 1 23.78 ? N3 8XK 403 A 1 HETATM 23 N N4 8XK . . . D 3 -17.748 12.966 41.661 1 25.11 ? N4 8XK 403 A 1 HETATM 24 C C4 8XK . . . D 3 -18.987 12.435 41.712 1 24.09 ? C4 8XK 403 A 1 HETATM 25 N N2 8XK . . . D 3 -19.909 13.129 42.481 1 23.96 ? N2 8XK 403 A 1 HETATM 26 N N1 8XK . . . D 3 -19.958 16.143 44.454 1 27.22 ? N1 8XK 403 A 1 HETATM 27 N N 8XK . . . D 3 -20.461 15.235 43.573 1 26.02 ? N 8XK 403 A 1 HETATM 28 C C 8XK . . . D 3 -21.786 15.468 43.014 1 22.41 ? C 8XK 403 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #