data_5NHV # _model_server_result.job_id FXhUaJ4asfWzrgoxgqn5Ig _model_server_result.datetime_utc '2024-12-22 02:09:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nhv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5NHV # _exptl.entry_id 5NHV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 313.354 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-[2-(oxan-4-ylamino)pyrimidin-4-yl]-3,4-dihydro-2~{H}-pyrrolo[1,2-a]pyrazin-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.43 _cell.angle_gamma 90 _cell.entry_id 5NHV _cell.length_a 48.883 _cell.length_b 70.597 _cell.length_c 60.988 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NHV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H19 N5 O2' _chem_comp.formula_weight 313.354 _chem_comp.id 8QB _chem_comp.mon_nstd_flag . _chem_comp.name 7-[2-(oxan-4-ylamino)pyrimidin-4-yl]-3,4-dihydro-2~{H}-pyrrolo[1,2-a]pyrazin-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C10 8QB doub 1 n n C10 C6 8QB sing 2 n n C10 N3 8QB sing 3 n n C C1 8QB doub 4 n y C C3 8QB sing 5 n y C5 C6 8QB doub 6 n y C5 C4 8QB sing 7 n y C1 N 8QB sing 8 n y C6 N2 8QB sing 9 n y N3 C9 8QB sing 10 n n C3 C4 8QB sing 11 n n C3 N1 8QB doub 12 n y C4 C7 8QB doub 13 n y N C2 8QB doub 14 n y N2 C7 8QB sing 15 n y N2 C8 8QB sing 16 n n N1 C2 8QB sing 17 n y C2 N4 8QB sing 18 n n C8 C9 8QB sing 19 n n N4 C11 8QB sing 20 n n C11 C15 8QB sing 21 n n C11 C12 8QB sing 22 n n C15 C14 8QB sing 23 n n C14 O1 8QB sing 24 n n C12 C13 8QB sing 25 n n C13 O1 8QB sing 26 n n C1 H1 8QB sing 27 n n C7 H2 8QB sing 28 n n C8 H3 8QB sing 29 n n C8 H4 8QB sing 30 n n C9 H5 8QB sing 31 n n C9 H6 8QB sing 32 n n C11 H7 8QB sing 33 n n C12 H8 8QB sing 34 n n C12 H9 8QB sing 35 n n C13 H10 8QB sing 36 n n C13 H11 8QB sing 37 n n C14 H12 8QB sing 38 n n C14 H13 8QB sing 39 n n C15 H14 8QB sing 40 n n C15 H15 8QB sing 41 n n C5 H16 8QB sing 42 n n N3 H17 8QB sing 43 n n C H18 8QB sing 44 n n N4 H19 8QB sing 45 n n # _atom_sites.entry_id 5NHV _atom_sites.fract_transf_matrix[1][1] 0.020457 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00762 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014165 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017497 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 1 SO4 SO4 . C 3 8QB A 1 402 1 8QB INH . D 4 HOH A 1 501 2 HOH HOH . D 4 HOH A 2 502 115 HOH HOH . D 4 HOH A 3 503 177 HOH HOH . D 4 HOH A 4 504 176 HOH HOH . D 4 HOH A 5 505 175 HOH HOH . D 4 HOH A 6 506 171 HOH HOH . D 4 HOH A 7 507 14 HOH HOH . D 4 HOH A 8 508 149 HOH HOH . D 4 HOH A 9 509 5 HOH HOH . D 4 HOH A 10 510 32 HOH HOH . D 4 HOH A 11 511 59 HOH HOH . D 4 HOH A 12 512 54 HOH HOH . D 4 HOH A 13 513 26 HOH HOH . D 4 HOH A 14 514 19 HOH HOH . D 4 HOH A 15 515 132 HOH HOH . D 4 HOH A 16 516 9 HOH HOH . D 4 HOH A 17 517 31 HOH HOH . D 4 HOH A 18 518 68 HOH HOH . D 4 HOH A 19 519 125 HOH HOH . D 4 HOH A 20 520 116 HOH HOH . D 4 HOH A 21 521 78 HOH HOH . D 4 HOH A 22 522 33 HOH HOH . D 4 HOH A 23 523 15 HOH HOH . D 4 HOH A 24 524 41 HOH HOH . D 4 HOH A 25 525 172 HOH HOH . D 4 HOH A 26 526 3 HOH HOH . D 4 HOH A 27 527 118 HOH HOH . D 4 HOH A 28 528 95 HOH HOH . D 4 HOH A 29 529 81 HOH HOH . D 4 HOH A 30 530 56 HOH HOH . D 4 HOH A 31 531 117 HOH HOH . D 4 HOH A 32 532 24 HOH HOH . D 4 HOH A 33 533 57 HOH HOH . D 4 HOH A 34 534 111 HOH HOH . D 4 HOH A 35 535 29 HOH HOH . D 4 HOH A 36 536 11 HOH HOH . D 4 HOH A 37 537 136 HOH HOH . D 4 HOH A 38 538 127 HOH HOH . D 4 HOH A 39 539 88 HOH HOH . D 4 HOH A 40 540 7 HOH HOH . D 4 HOH A 41 541 53 HOH HOH . D 4 HOH A 42 542 40 HOH HOH . D 4 HOH A 43 543 46 HOH HOH . D 4 HOH A 44 544 92 HOH HOH . D 4 HOH A 45 545 13 HOH HOH . D 4 HOH A 46 546 67 HOH HOH . D 4 HOH A 47 547 34 HOH HOH . D 4 HOH A 48 548 87 HOH HOH . D 4 HOH A 49 549 155 HOH HOH . D 4 HOH A 50 550 17 HOH HOH . D 4 HOH A 51 551 153 HOH HOH . D 4 HOH A 52 552 80 HOH HOH . D 4 HOH A 53 553 107 HOH HOH . D 4 HOH A 54 554 48 HOH HOH . D 4 HOH A 55 555 6 HOH HOH . D 4 HOH A 56 556 100 HOH HOH . D 4 HOH A 57 557 8 HOH HOH . D 4 HOH A 58 558 64 HOH HOH . D 4 HOH A 59 559 12 HOH HOH . D 4 HOH A 60 560 20 HOH HOH . D 4 HOH A 61 561 1 HOH HOH . D 4 HOH A 62 562 38 HOH HOH . D 4 HOH A 63 563 55 HOH HOH . D 4 HOH A 64 564 72 HOH HOH . D 4 HOH A 65 565 157 HOH HOH . D 4 HOH A 66 566 16 HOH HOH . D 4 HOH A 67 567 49 HOH HOH . D 4 HOH A 68 568 75 HOH HOH . D 4 HOH A 69 569 101 HOH HOH . D 4 HOH A 70 570 178 HOH HOH . D 4 HOH A 71 571 91 HOH HOH . D 4 HOH A 72 572 122 HOH HOH . D 4 HOH A 73 573 169 HOH HOH . D 4 HOH A 74 574 145 HOH HOH . D 4 HOH A 75 575 36 HOH HOH . D 4 HOH A 76 576 133 HOH HOH . D 4 HOH A 77 577 52 HOH HOH . D 4 HOH A 78 578 143 HOH HOH . D 4 HOH A 79 579 164 HOH HOH . D 4 HOH A 80 580 4 HOH HOH . D 4 HOH A 81 581 161 HOH HOH . D 4 HOH A 82 582 110 HOH HOH . D 4 HOH A 83 583 168 HOH HOH . D 4 HOH A 84 584 65 HOH HOH . D 4 HOH A 85 585 76 HOH HOH . D 4 HOH A 86 586 154 HOH HOH . D 4 HOH A 87 587 94 HOH HOH . D 4 HOH A 88 588 103 HOH HOH . D 4 HOH A 89 589 60 HOH HOH . D 4 HOH A 90 590 27 HOH HOH . D 4 HOH A 91 591 163 HOH HOH . D 4 HOH A 92 592 21 HOH HOH . D 4 HOH A 93 593 108 HOH HOH . D 4 HOH A 94 594 10 HOH HOH . D 4 HOH A 95 595 23 HOH HOH . D 4 HOH A 96 596 112 HOH HOH . D 4 HOH A 97 597 135 HOH HOH . D 4 HOH A 98 598 121 HOH HOH . D 4 HOH A 99 599 25 HOH HOH . D 4 HOH A 100 600 98 HOH HOH . D 4 HOH A 101 601 62 HOH HOH . D 4 HOH A 102 602 113 HOH HOH . D 4 HOH A 103 603 37 HOH HOH . D 4 HOH A 104 604 74 HOH HOH . D 4 HOH A 105 605 28 HOH HOH . D 4 HOH A 106 606 22 HOH HOH . D 4 HOH A 107 607 97 HOH HOH . D 4 HOH A 108 608 124 HOH HOH . D 4 HOH A 109 609 158 HOH HOH . D 4 HOH A 110 610 47 HOH HOH . D 4 HOH A 111 611 159 HOH HOH . D 4 HOH A 112 612 70 HOH HOH . D 4 HOH A 113 613 39 HOH HOH . D 4 HOH A 114 614 44 HOH HOH . D 4 HOH A 115 615 89 HOH HOH . D 4 HOH A 116 616 43 HOH HOH . D 4 HOH A 117 617 130 HOH HOH . D 4 HOH A 118 618 18 HOH HOH . D 4 HOH A 119 619 170 HOH HOH . D 4 HOH A 120 620 137 HOH HOH . D 4 HOH A 121 621 151 HOH HOH . D 4 HOH A 122 622 50 HOH HOH . D 4 HOH A 123 623 166 HOH HOH . D 4 HOH A 124 624 114 HOH HOH . D 4 HOH A 125 625 79 HOH HOH . D 4 HOH A 126 626 156 HOH HOH . D 4 HOH A 127 627 71 HOH HOH . D 4 HOH A 128 628 109 HOH HOH . D 4 HOH A 129 629 147 HOH HOH . D 4 HOH A 130 630 131 HOH HOH . D 4 HOH A 131 631 93 HOH HOH . D 4 HOH A 132 632 126 HOH HOH . D 4 HOH A 133 633 173 HOH HOH . D 4 HOH A 134 634 85 HOH HOH . D 4 HOH A 135 635 102 HOH HOH . D 4 HOH A 136 636 45 HOH HOH . D 4 HOH A 137 637 142 HOH HOH . D 4 HOH A 138 638 134 HOH HOH . D 4 HOH A 139 639 61 HOH HOH . D 4 HOH A 140 640 66 HOH HOH . D 4 HOH A 141 641 106 HOH HOH . D 4 HOH A 142 642 162 HOH HOH . D 4 HOH A 143 643 82 HOH HOH . D 4 HOH A 144 644 167 HOH HOH . D 4 HOH A 145 645 150 HOH HOH . D 4 HOH A 146 646 42 HOH HOH . D 4 HOH A 147 647 123 HOH HOH . D 4 HOH A 148 648 129 HOH HOH . D 4 HOH A 149 649 83 HOH HOH . D 4 HOH A 150 650 73 HOH HOH . D 4 HOH A 151 651 119 HOH HOH . D 4 HOH A 152 652 139 HOH HOH . D 4 HOH A 153 653 35 HOH HOH . D 4 HOH A 154 654 104 HOH HOH . D 4 HOH A 155 655 174 HOH HOH . D 4 HOH A 156 656 144 HOH HOH . D 4 HOH A 157 657 90 HOH HOH . D 4 HOH A 158 658 86 HOH HOH . D 4 HOH A 159 659 120 HOH HOH . D 4 HOH A 160 660 152 HOH HOH . D 4 HOH A 161 661 30 HOH HOH . D 4 HOH A 162 662 84 HOH HOH . D 4 HOH A 163 663 51 HOH HOH . D 4 HOH A 164 664 138 HOH HOH . D 4 HOH A 165 665 99 HOH HOH . D 4 HOH A 166 666 63 HOH HOH . D 4 HOH A 167 667 128 HOH HOH . D 4 HOH A 168 668 105 HOH HOH . D 4 HOH A 169 669 165 HOH HOH . D 4 HOH A 170 670 146 HOH HOH . D 4 HOH A 171 671 141 HOH HOH . D 4 HOH A 172 672 96 HOH HOH . D 4 HOH A 173 673 160 HOH HOH . D 4 HOH A 174 674 148 HOH HOH . D 4 HOH A 175 675 77 HOH HOH . D 4 HOH A 176 676 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8QB . . . C 3 -18.15 10.565 40.484 1 25.53 ? C1 8QB 402 A 1 HETATM 2 C C2 8QB . . . C 3 -18.603 12.447 41.683 1 25.34 ? C2 8QB 402 A 1 HETATM 3 C C3 8QB . . . C 3 -16.445 12.113 40.991 1 24.24 ? C3 8QB 402 A 1 HETATM 4 C C7 8QB . . . C 3 -14.584 13.718 41.625 1 27.82 ? C7 8QB 402 A 1 HETATM 5 C C8 8QB . . . C 3 -12.384 14.939 41.921 1 35.37 ? C8 8QB 402 A 1 HETATM 6 C C9 8QB . . . C 3 -10.941 14.484 41.935 1 34.55 ? C9 8QB 402 A 1 HETATM 7 C C10 8QB . . . C 3 -11.392 12.708 40.268 1 31.26 ? C10 8QB 402 A 1 HETATM 8 C C11 8QB . . . C 3 -19.214 14.478 43.038 1 30.53 ? C11 8QB 402 A 1 HETATM 9 C C12 8QB . . . C 3 -18.389 14.293 44.312 1 31.72 ? C12 8QB 402 A 1 HETATM 10 C C13 8QB . . . C 3 -18.183 15.642 44.97 1 35.12 ? C13 8QB 402 A 1 HETATM 11 C C14 8QB . . . C 3 -20.19 16.516 44.065 1 34.18 ? C14 8QB 402 A 1 HETATM 12 C C15 8QB . . . C 3 -20.509 15.225 43.341 1 31.55 ? C15 8QB 402 A 1 HETATM 13 O O 8QB . . . C 3 -10.95 11.759 39.625 1 30.16 ? O 8QB 402 A 1 HETATM 14 C C6 8QB . . . C 3 -12.806 12.816 40.638 1 30.64 ? C6 8QB 402 A 1 HETATM 15 C C5 8QB . . . C 3 -13.872 11.98 40.391 1 27.1 ? C5 8QB 402 A 1 HETATM 16 N N3 8QB . . . C 3 -10.599 13.671 40.754 1 32.72 ? N3 8QB 402 A 1 HETATM 17 N N2 8QB . . . C 3 -13.252 13.861 41.427 1 31.65 ? N2 8QB 402 A 1 HETATM 18 C C4 8QB . . . C 3 -15.046 12.582 41.001 1 26.48 ? C4 8QB 402 A 1 HETATM 19 C C 8QB . . . C 3 -16.825 10.937 40.352 1 24.08 ? C 8QB 402 A 1 HETATM 20 N N1 8QB . . . C 3 -17.322 12.876 41.655 1 25.17 ? N1 8QB 402 A 1 HETATM 21 N N 8QB . . . C 3 -19.065 11.308 41.134 1 25.69 ? N 8QB 402 A 1 HETATM 22 N N4 8QB . . . C 3 -19.483 13.203 42.363 1 25.84 ? N4 8QB 402 A 1 HETATM 23 O O1 8QB . . . C 3 -19.436 16.279 45.263 1 35.28 ? O1 8QB 402 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 23 #