data_5NI5
#
_model_server_result.job_id            guLcL9O27Dz2tpFQJ3eBew 
_model_server_result.datetime_utc      '2024-12-02 01:32:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ni5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    5NI5 
#
_exptl.entry_id    5NI5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NI5 
_cell.length_a            62.31 
_cell.length_b            62.31 
_cell.length_c            158.64 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NI5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O CYS 124 A CYS 366 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc2 A O TYR 127 A TYR 369 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc3 A OG SER 166 A SER 408 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? 
metalc ? metalc4 D NA NA . A NA 602 1_555 E O HOH . A HOH 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? 
metalc ? metalc5 D NA NA . A NA 602 1_555 E O HOH . A HOH 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5NI5 
_atom_sites.fract_transf_matrix[1][1]    0.016049 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016049 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006304 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 8YB A 1 601 1 8YB INH . 
D 4 NA A 1 602 1 NA NA . 
E 5 HOH A 1 701 27 HOH HOH . 
E 5 HOH A 2 702 79 HOH HOH . 
E 5 HOH A 3 703 45 HOH HOH . 
E 5 HOH A 4 704 65 HOH HOH . 
E 5 HOH A 5 705 30 HOH HOH . 
E 5 HOH A 6 706 11 HOH HOH . 
E 5 HOH A 7 707 64 HOH HOH . 
E 5 HOH A 8 708 35 HOH HOH . 
E 5 HOH A 9 709 68 HOH HOH . 
E 5 HOH A 10 710 34 HOH HOH . 
E 5 HOH A 11 711 31 HOH HOH . 
E 5 HOH A 12 712 39 HOH HOH . 
E 5 HOH A 13 713 77 HOH HOH . 
E 5 HOH A 14 714 24 HOH HOH . 
E 5 HOH A 15 715 28 HOH HOH . 
E 5 HOH A 16 716 36 HOH HOH . 
E 5 HOH A 17 717 21 HOH HOH . 
E 5 HOH A 18 718 78 HOH HOH . 
E 5 HOH A 19 719 66 HOH HOH . 
E 5 HOH A 20 720 38 HOH HOH . 
E 5 HOH A 21 721 48 HOH HOH . 
E 5 HOH A 22 722 20 HOH HOH . 
E 5 HOH A 23 723 18 HOH HOH . 
E 5 HOH A 24 724 33 HOH HOH . 
E 5 HOH A 25 725 2 HOH HOH . 
E 5 HOH A 26 726 55 HOH HOH . 
E 5 HOH A 27 727 14 HOH HOH . 
E 5 HOH A 28 728 37 HOH HOH . 
E 5 HOH A 29 729 63 HOH HOH . 
E 5 HOH A 30 730 3 HOH HOH . 
E 5 HOH A 31 731 6 HOH HOH . 
E 5 HOH A 32 732 25 HOH HOH . 
E 5 HOH A 33 733 50 HOH HOH . 
E 5 HOH A 34 734 29 HOH HOH . 
E 5 HOH A 35 735 43 HOH HOH . 
E 5 HOH A 36 736 54 HOH HOH . 
E 5 HOH A 37 737 32 HOH HOH . 
E 5 HOH A 38 738 26 HOH HOH . 
E 5 HOH A 39 739 1 HOH HOH . 
E 5 HOH A 40 740 23 HOH HOH . 
E 5 HOH A 41 741 72 HOH HOH . 
E 5 HOH A 42 742 49 HOH HOH . 
E 5 HOH A 43 743 76 HOH HOH . 
E 5 HOH A 44 744 19 HOH HOH . 
E 5 HOH A 45 745 40 HOH HOH . 
E 5 HOH A 46 746 8 HOH HOH . 
E 5 HOH A 47 747 5 HOH HOH . 
E 5 HOH A 48 748 22 HOH HOH . 
E 5 HOH A 49 749 67 HOH HOH . 
E 5 HOH A 50 750 73 HOH HOH . 
E 5 HOH A 51 751 53 HOH HOH . 
E 5 HOH A 52 752 12 HOH HOH . 
E 5 HOH A 53 753 61 HOH HOH . 
E 5 HOH A 54 754 41 HOH HOH . 
E 5 HOH A 55 755 16 HOH HOH . 
E 5 HOH A 56 756 57 HOH HOH . 
E 5 HOH A 57 757 7 HOH HOH . 
E 5 HOH A 58 758 4 HOH HOH . 
E 5 HOH A 59 759 62 HOH HOH . 
E 5 HOH A 60 760 42 HOH HOH . 
E 5 HOH A 61 761 60 HOH HOH . 
E 5 HOH A 62 762 46 HOH HOH . 
E 5 HOH A 63 763 56 HOH HOH . 
E 5 HOH A 64 764 10 HOH HOH . 
E 5 HOH A 65 765 44 HOH HOH . 
E 5 HOH A 66 766 9 HOH HOH . 
E 5 HOH A 67 767 15 HOH HOH . 
E 5 HOH A 68 768 13 HOH HOH . 
E 5 HOH A 69 769 51 HOH HOH . 
E 5 HOH A 70 770 47 HOH HOH . 
E 5 HOH A 71 771 70 HOH HOH . 
E 5 HOH A 72 772 59 HOH HOH . 
E 5 HOH A 73 773 74 HOH HOH . 
E 5 HOH A 74 774 69 HOH HOH . 
E 5 HOH A 75 775 75 HOH HOH . 
E 5 HOH A 76 776 71 HOH HOH . 
E 5 HOH A 77 777 52 HOH HOH . 
F 5 HOH C 1 701 17 HOH HOH . 
F 5 HOH C 2 702 58 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -33.488 
_atom_site.Cartn_y               -2.978 
_atom_site.Cartn_z               -23.616 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        66.42 
_atom_site.pdbx_formal_charge    1 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           602 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#