data_5NI7 # _model_server_result.job_id syhCGlbsTBov1wJUB2-lAQ _model_server_result.datetime_utc '2024-11-15 18:46:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ni7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 5NI7 # _exptl.entry_id 5NI7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 440.535 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[4-(5-cyano-2-methoxy-phenyl)thiophen-2-yl]-2-(4-ethylsulfonylphenyl)ethanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NI7 _cell.length_a 62.62 _cell.length_b 62.62 _cell.length_c 157.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NI7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O CYS 124 A CYS 366 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc2 A O TYR 127 A TYR 369 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc3 A OG SER 166 A SER 408 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? # _chem_comp.formula 'C22 H20 N2 O4 S2' _chem_comp.formula_weight 440.535 _chem_comp.id 8Y8 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[4-(5-cyano-2-methoxy-phenyl)thiophen-2-yl]-2-(4-ethylsulfonylphenyl)ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N23 C1 8Y8 trip 1 n n C1 C11 8Y8 sing 2 n n C2 C11 8Y8 doub 3 n y C2 C5 8Y8 sing 4 n y C11 C8 8Y8 sing 5 n y C5 C15 8Y8 doub 6 n y C8 C12 8Y8 doub 7 n y O26 S30 8Y8 doub 8 n n C19 C22 8Y8 sing 9 n n C15 C12 8Y8 sing 10 n y C15 O28 8Y8 sing 11 n n C12 C13 8Y8 sing 12 n n C22 S30 8Y8 sing 13 n n S30 O27 8Y8 doub 14 n n S30 C16 8Y8 sing 15 n n C20 O28 8Y8 sing 16 n n C6 C16 8Y8 doub 17 n y C6 C3 8Y8 sing 18 n y C13 C9 8Y8 sing 19 n y C13 C10 8Y8 doub 20 n y C9 C17 8Y8 doub 21 n y C16 C7 8Y8 sing 22 n y C10 S29 8Y8 sing 23 n y C3 C14 8Y8 doub 24 n y C17 S29 8Y8 sing 25 n y C17 N24 8Y8 sing 26 n n C7 C4 8Y8 doub 27 n y N24 C18 8Y8 sing 28 n n C14 C4 8Y8 sing 29 n y C14 C21 8Y8 sing 30 n n C18 C21 8Y8 sing 31 n n C18 O25 8Y8 doub 32 n n C2 H1 8Y8 sing 33 n n C3 H2 8Y8 sing 34 n n C4 H3 8Y8 sing 35 n n C5 H4 8Y8 sing 36 n n C6 H5 8Y8 sing 37 n n C7 H6 8Y8 sing 38 n n C8 H7 8Y8 sing 39 n n C9 H8 8Y8 sing 40 n n C10 H9 8Y8 sing 41 n n C19 H10 8Y8 sing 42 n n C19 H11 8Y8 sing 43 n n C19 H12 8Y8 sing 44 n n C20 H13 8Y8 sing 45 n n C20 H14 8Y8 sing 46 n n C20 H15 8Y8 sing 47 n n C21 H16 8Y8 sing 48 n n C21 H17 8Y8 sing 49 n n C22 H18 8Y8 sing 50 n n C22 H19 8Y8 sing 51 n n N24 H20 8Y8 sing 52 n n # _atom_sites.entry_id 5NI7 _atom_sites.fract_transf_matrix[1][1] 0.015969 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015969 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 8Y8 A 1 601 1 8Y8 UNL . D 4 NA A 1 602 1 NA NA . E 5 DMS A 1 603 1 DMS DMS . F 6 HOH A 1 701 44 HOH HOH . F 6 HOH A 2 702 10 HOH HOH . F 6 HOH A 3 703 7 HOH HOH . F 6 HOH A 4 704 61 HOH HOH . F 6 HOH A 5 705 43 HOH HOH . F 6 HOH A 6 706 71 HOH HOH . F 6 HOH A 7 707 46 HOH HOH . F 6 HOH A 8 708 69 HOH HOH . F 6 HOH A 9 709 2 HOH HOH . F 6 HOH A 10 710 82 HOH HOH . F 6 HOH A 11 711 1 HOH HOH . F 6 HOH A 12 712 58 HOH HOH . F 6 HOH A 13 713 4 HOH HOH . F 6 HOH A 14 714 91 HOH HOH . F 6 HOH A 15 715 85 HOH HOH . F 6 HOH A 16 716 26 HOH HOH . F 6 HOH A 17 717 13 HOH HOH . F 6 HOH A 18 718 19 HOH HOH . F 6 HOH A 19 719 74 HOH HOH . F 6 HOH A 20 720 11 HOH HOH . F 6 HOH A 21 721 8 HOH HOH . F 6 HOH A 22 722 12 HOH HOH . F 6 HOH A 23 723 5 HOH HOH . F 6 HOH A 24 724 32 HOH HOH . F 6 HOH A 25 725 92 HOH HOH . F 6 HOH A 26 726 70 HOH HOH . F 6 HOH A 27 727 95 HOH HOH . F 6 HOH A 28 728 27 HOH HOH . F 6 HOH A 29 729 24 HOH HOH . F 6 HOH A 30 730 80 HOH HOH . F 6 HOH A 31 731 6 HOH HOH . F 6 HOH A 32 732 31 HOH HOH . F 6 HOH A 33 733 78 HOH HOH . F 6 HOH A 34 734 56 HOH HOH . F 6 HOH A 35 735 59 HOH HOH . F 6 HOH A 36 736 34 HOH HOH . F 6 HOH A 37 737 55 HOH HOH . F 6 HOH A 38 738 14 HOH HOH . F 6 HOH A 39 739 17 HOH HOH . F 6 HOH A 40 740 39 HOH HOH . F 6 HOH A 41 741 94 HOH HOH . F 6 HOH A 42 742 48 HOH HOH . F 6 HOH A 43 743 54 HOH HOH . F 6 HOH A 44 744 23 HOH HOH . F 6 HOH A 45 745 72 HOH HOH . F 6 HOH A 46 746 36 HOH HOH . F 6 HOH A 47 747 16 HOH HOH . F 6 HOH A 48 748 57 HOH HOH . F 6 HOH A 49 749 49 HOH HOH . F 6 HOH A 50 750 60 HOH HOH . F 6 HOH A 51 751 22 HOH HOH . F 6 HOH A 52 752 33 HOH HOH . F 6 HOH A 53 753 21 HOH HOH . F 6 HOH A 54 754 15 HOH HOH . F 6 HOH A 55 755 45 HOH HOH . F 6 HOH A 56 756 20 HOH HOH . F 6 HOH A 57 757 9 HOH HOH . F 6 HOH A 58 758 75 HOH HOH . F 6 HOH A 59 759 76 HOH HOH . F 6 HOH A 60 760 40 HOH HOH . F 6 HOH A 61 761 90 HOH HOH . F 6 HOH A 62 762 37 HOH HOH . F 6 HOH A 63 763 62 HOH HOH . F 6 HOH A 64 764 86 HOH HOH . F 6 HOH A 65 765 89 HOH HOH . F 6 HOH A 66 766 63 HOH HOH . F 6 HOH A 67 767 53 HOH HOH . F 6 HOH A 68 768 3 HOH HOH . F 6 HOH A 69 769 51 HOH HOH . F 6 HOH A 70 770 35 HOH HOH . F 6 HOH A 71 771 52 HOH HOH . F 6 HOH A 72 772 81 HOH HOH . F 6 HOH A 73 773 83 HOH HOH . F 6 HOH A 74 774 68 HOH HOH . F 6 HOH A 75 775 64 HOH HOH . F 6 HOH A 76 776 66 HOH HOH . F 6 HOH A 77 777 84 HOH HOH . F 6 HOH A 78 778 41 HOH HOH . F 6 HOH A 79 779 65 HOH HOH . F 6 HOH A 80 780 67 HOH HOH . F 6 HOH A 81 781 38 HOH HOH . F 6 HOH A 82 782 18 HOH HOH . F 6 HOH A 83 783 50 HOH HOH . F 6 HOH A 84 784 79 HOH HOH . F 6 HOH A 85 785 25 HOH HOH . F 6 HOH A 86 786 47 HOH HOH . F 6 HOH A 87 787 30 HOH HOH . F 6 HOH A 88 788 73 HOH HOH . F 6 HOH A 89 789 29 HOH HOH . F 6 HOH A 90 790 28 HOH HOH . F 6 HOH A 91 791 42 HOH HOH . G 6 HOH C 1 701 88 HOH HOH . G 6 HOH C 2 702 96 HOH HOH . G 6 HOH C 3 703 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8Y8 . . . C 3 -30.549 6.01 -19.307 1 36.04 ? C1 8Y8 601 A 1 HETATM 2 C C2 8Y8 . . . C 3 -30.001 8.189 -18.311 1 36.2 ? C2 8Y8 601 A 1 HETATM 3 C C3 8Y8 . . . C 3 -28.035 -0.176 -14.181 1 42.92 ? C3 8Y8 601 A 1 HETATM 4 C C4 8Y8 . . . C 3 -26.616 -0.955 -12.444 1 45.1 ? C4 8Y8 601 A 1 HETATM 5 C C5 8Y8 . . . C 3 -29.44 8.907 -17.272 1 33.35 ? C5 8Y8 601 A 1 HETATM 6 C C6 8Y8 . . . C 3 -27.437 -1.05 -15.06 1 43.34 ? C6 8Y8 601 A 1 HETATM 7 C C7 8Y8 . . . C 3 -26.002 -1.838 -13.312 1 44.58 ? C7 8Y8 601 A 1 HETATM 8 C C8 8Y8 . . . C 3 -29.477 6.129 -17.192 1 35.58 ? C8 8Y8 601 A 1 HETATM 9 C C9 8Y8 . . . C 3 -28.97 4.752 -14.701 1 39.17 ? C9 8Y8 601 A 1 HETATM 10 C C10 8Y8 . . . C 3 -27.412 6.422 -14.24 1 40.87 ? C10 8Y8 601 A 1 HETATM 11 C C11 8Y8 . . . C 3 -30.015 6.802 -18.264 1 36.66 ? C11 8Y8 601 A 1 HETATM 12 C C12 8Y8 . . . C 3 -28.935 6.841 -16.147 1 37.52 ? C12 8Y8 601 A 1 HETATM 13 C C13 8Y8 . . . C 3 -28.456 6.032 -15.058 1 39.16 ? C13 8Y8 601 A 1 HETATM 14 C C14 8Y8 . . . C 3 -27.631 -0.121 -12.87 1 42.1 ? C14 8Y8 601 A 1 HETATM 15 C C15 8Y8 . . . C 3 -28.914 8.235 -16.181 1 36.14 ? C15 8Y8 601 A 1 HETATM 16 C C16 8Y8 . . . C 3 -26.428 -1.869 -14.621 1 42.93 ? C16 8Y8 601 A 1 HETATM 17 C C17 8Y8 . . . C 3 -28.321 4.182 -13.627 1 42.74 ? C17 8Y8 601 A 1 HETATM 18 C C18 8Y8 . . . C 3 -27.739 2.239 -12.226 1 44.83 ? C18 8Y8 601 A 1 HETATM 19 C C19 8Y8 . . . C 3 -24.316 -0.708 -16.588 1 40.12 ? C19 8Y8 601 A 1 HETATM 20 C C20 8Y8 . . . C 3 -28.446 10.36 -15.22 1 34.64 ? C20 8Y8 601 A 1 HETATM 21 C C21 8Y8 . . . C 3 -28.281 0.859 -11.941 1 43.26 ? C21 8Y8 601 A 1 HETATM 22 C C22 8Y8 . . . C 3 -24.099 -2.154 -16.136 1 41.7 ? C22 8Y8 601 A 1 HETATM 23 N N23 8Y8 . . . C 3 -30.953 5.34 -20.163 1 40.35 ? N23 8Y8 601 A 1 HETATM 24 N N24 8Y8 . . . C 3 -28.592 2.958 -13.036 1 44.27 ? N24 8Y8 601 A 1 HETATM 25 O O25 8Y8 . . . C 3 -26.65 2.6 -11.809 1 46.71 ? O25 8Y8 601 A 1 HETATM 26 O O26 8Y8 . . . C 3 -26.45 -2.951 -16.997 1 44.44 ? O26 8Y8 601 A 1 HETATM 27 O O27 8Y8 . . . C 3 -25.4 -4.182 -15.059 1 47.41 ? O27 8Y8 601 A 1 HETATM 28 O O28 8Y8 . . . C 3 -28.37 8.93 -15.092 1 40.04 ? O28 8Y8 601 A 1 HETATM 29 S S29 8Y8 . . . C 3 -27.094 5.235 -13.04 1 45.23 ? S29 8Y8 601 A 1 HETATM 30 S S30 8Y8 . . . C 3 -25.652 -2.959 -15.79 1 43.29 ? S30 8Y8 601 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #