data_5NI7
#
_model_server_result.job_id            n9V9yjGGyAnC8_EeddCErQ 
_model_server_result.datetime_utc      '2024-11-15 18:43:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ni7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":603}' 
#
_entry.id    5NI7 
#
_exptl.entry_id    5NI7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NI7 
_cell.length_a            62.62 
_cell.length_b            62.62 
_cell.length_c            157.3 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NI7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O CYS 124 A CYS 366 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc2 A O TYR 127 A TYR 369 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? 
metalc ? metalc3 A OG SER 166 A SER 408 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 135 n n 
S C1 DMS sing 136 n n 
S C2 DMS sing 137 n n 
C1 H11 DMS sing 138 n n 
C1 H12 DMS sing 139 n n 
C1 H13 DMS sing 140 n n 
C2 H21 DMS sing 141 n n 
C2 H22 DMS sing 142 n n 
C2 H23 DMS sing 143 n n 
#
_atom_sites.entry_id                     5NI7 
_atom_sites.fract_transf_matrix[1][1]    0.015969 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015969 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006357 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 8Y8 A 1 601 1 8Y8 UNL . 
D 4 NA A 1 602 1 NA NA . 
E 5 DMS A 1 603 1 DMS DMS . 
F 6 HOH A 1 701 44 HOH HOH . 
F 6 HOH A 2 702 10 HOH HOH . 
F 6 HOH A 3 703 7 HOH HOH . 
F 6 HOH A 4 704 61 HOH HOH . 
F 6 HOH A 5 705 43 HOH HOH . 
F 6 HOH A 6 706 71 HOH HOH . 
F 6 HOH A 7 707 46 HOH HOH . 
F 6 HOH A 8 708 69 HOH HOH . 
F 6 HOH A 9 709 2 HOH HOH . 
F 6 HOH A 10 710 82 HOH HOH . 
F 6 HOH A 11 711 1 HOH HOH . 
F 6 HOH A 12 712 58 HOH HOH . 
F 6 HOH A 13 713 4 HOH HOH . 
F 6 HOH A 14 714 91 HOH HOH . 
F 6 HOH A 15 715 85 HOH HOH . 
F 6 HOH A 16 716 26 HOH HOH . 
F 6 HOH A 17 717 13 HOH HOH . 
F 6 HOH A 18 718 19 HOH HOH . 
F 6 HOH A 19 719 74 HOH HOH . 
F 6 HOH A 20 720 11 HOH HOH . 
F 6 HOH A 21 721 8 HOH HOH . 
F 6 HOH A 22 722 12 HOH HOH . 
F 6 HOH A 23 723 5 HOH HOH . 
F 6 HOH A 24 724 32 HOH HOH . 
F 6 HOH A 25 725 92 HOH HOH . 
F 6 HOH A 26 726 70 HOH HOH . 
F 6 HOH A 27 727 95 HOH HOH . 
F 6 HOH A 28 728 27 HOH HOH . 
F 6 HOH A 29 729 24 HOH HOH . 
F 6 HOH A 30 730 80 HOH HOH . 
F 6 HOH A 31 731 6 HOH HOH . 
F 6 HOH A 32 732 31 HOH HOH . 
F 6 HOH A 33 733 78 HOH HOH . 
F 6 HOH A 34 734 56 HOH HOH . 
F 6 HOH A 35 735 59 HOH HOH . 
F 6 HOH A 36 736 34 HOH HOH . 
F 6 HOH A 37 737 55 HOH HOH . 
F 6 HOH A 38 738 14 HOH HOH . 
F 6 HOH A 39 739 17 HOH HOH . 
F 6 HOH A 40 740 39 HOH HOH . 
F 6 HOH A 41 741 94 HOH HOH . 
F 6 HOH A 42 742 48 HOH HOH . 
F 6 HOH A 43 743 54 HOH HOH . 
F 6 HOH A 44 744 23 HOH HOH . 
F 6 HOH A 45 745 72 HOH HOH . 
F 6 HOH A 46 746 36 HOH HOH . 
F 6 HOH A 47 747 16 HOH HOH . 
F 6 HOH A 48 748 57 HOH HOH . 
F 6 HOH A 49 749 49 HOH HOH . 
F 6 HOH A 50 750 60 HOH HOH . 
F 6 HOH A 51 751 22 HOH HOH . 
F 6 HOH A 52 752 33 HOH HOH . 
F 6 HOH A 53 753 21 HOH HOH . 
F 6 HOH A 54 754 15 HOH HOH . 
F 6 HOH A 55 755 45 HOH HOH . 
F 6 HOH A 56 756 20 HOH HOH . 
F 6 HOH A 57 757 9 HOH HOH . 
F 6 HOH A 58 758 75 HOH HOH . 
F 6 HOH A 59 759 76 HOH HOH . 
F 6 HOH A 60 760 40 HOH HOH . 
F 6 HOH A 61 761 90 HOH HOH . 
F 6 HOH A 62 762 37 HOH HOH . 
F 6 HOH A 63 763 62 HOH HOH . 
F 6 HOH A 64 764 86 HOH HOH . 
F 6 HOH A 65 765 89 HOH HOH . 
F 6 HOH A 66 766 63 HOH HOH . 
F 6 HOH A 67 767 53 HOH HOH . 
F 6 HOH A 68 768 3 HOH HOH . 
F 6 HOH A 69 769 51 HOH HOH . 
F 6 HOH A 70 770 35 HOH HOH . 
F 6 HOH A 71 771 52 HOH HOH . 
F 6 HOH A 72 772 81 HOH HOH . 
F 6 HOH A 73 773 83 HOH HOH . 
F 6 HOH A 74 774 68 HOH HOH . 
F 6 HOH A 75 775 64 HOH HOH . 
F 6 HOH A 76 776 66 HOH HOH . 
F 6 HOH A 77 777 84 HOH HOH . 
F 6 HOH A 78 778 41 HOH HOH . 
F 6 HOH A 79 779 65 HOH HOH . 
F 6 HOH A 80 780 67 HOH HOH . 
F 6 HOH A 81 781 38 HOH HOH . 
F 6 HOH A 82 782 18 HOH HOH . 
F 6 HOH A 83 783 50 HOH HOH . 
F 6 HOH A 84 784 79 HOH HOH . 
F 6 HOH A 85 785 25 HOH HOH . 
F 6 HOH A 86 786 47 HOH HOH . 
F 6 HOH A 87 787 30 HOH HOH . 
F 6 HOH A 88 788 73 HOH HOH . 
F 6 HOH A 89 789 29 HOH HOH . 
F 6 HOH A 90 790 28 HOH HOH . 
F 6 HOH A 91 791 42 HOH HOH . 
G 6 HOH C 1 701 88 HOH HOH . 
G 6 HOH C 2 702 96 HOH HOH . 
G 6 HOH C 3 703 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . E 5 -22.597 1.693 -38.884 1 117.25 ? S DMS 603 A 1 
HETATM 2 O O DMS . . . E 5 -22.056 1.414 -40.222 1 117.59 ? O DMS 603 A 1 
HETATM 3 C C1 DMS . . . E 5 -21.458 2.864 -38.192 1 116.86 ? C1 DMS 603 A 1 
HETATM 4 C C2 DMS . . . E 5 -23.97 2.766 -39.224 1 117.85 ? C2 DMS 603 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#