data_5NIB
#
_model_server_result.job_id            VT5Gyo3dnumb9KiVVN3MbA 
_model_server_result.datetime_utc      '2024-10-10 16:27:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nib 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":603}' 
#
_entry.id    5NIB 
#
_exptl.entry_id    5NIB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NIB 
_cell.length_a            62.14 
_cell.length_b            62.14 
_cell.length_c            158.25 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NIB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O CYS 124 A CYS 366 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc2 A O TYR 127 A TYR 369 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc3 A OG SER 166 A SER 408 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
metalc ? metalc4 D NA NA . A NA 602 1_555 F O HOH . A HOH 779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? 
metalc ? metalc5 D NA NA . A NA 602 1_555 F O HOH . A HOH 844 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 145 n n 
S C1 DMS sing 146 n n 
S C2 DMS sing 147 n n 
C1 H11 DMS sing 148 n n 
C1 H12 DMS sing 149 n n 
C1 H13 DMS sing 150 n n 
C2 H21 DMS sing 151 n n 
C2 H22 DMS sing 152 n n 
C2 H23 DMS sing 153 n n 
#
_atom_sites.entry_id                     5NIB 
_atom_sites.fract_transf_matrix[1][1]    0.016093 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016093 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006319 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 8Y5 A 1 601 1 8Y5 INH . 
D 4 NA A 1 602 1 NA NA . 
E 5 DMS A 1 603 1 DMS DMS . 
F 6 HOH A 1 701 57 HOH HOH . 
F 6 HOH A 2 702 121 HOH HOH . 
F 6 HOH A 3 703 16 HOH HOH . 
F 6 HOH A 4 704 124 HOH HOH . 
F 6 HOH A 5 705 1 HOH HOH . 
F 6 HOH A 6 706 43 HOH HOH . 
F 6 HOH A 7 707 30 HOH HOH . 
F 6 HOH A 8 708 2 HOH HOH . 
F 6 HOH A 9 709 6 HOH HOH . 
F 6 HOH A 10 710 9 HOH HOH . 
F 6 HOH A 11 711 42 HOH HOH . 
F 6 HOH A 12 712 137 HOH HOH . 
F 6 HOH A 13 713 73 HOH HOH . 
F 6 HOH A 14 714 148 HOH HOH . 
F 6 HOH A 15 715 50 HOH HOH . 
F 6 HOH A 16 716 92 HOH HOH . 
F 6 HOH A 17 717 173 HOH HOH . 
F 6 HOH A 18 718 47 HOH HOH . 
F 6 HOH A 19 719 123 HOH HOH . 
F 6 HOH A 20 720 58 HOH HOH . 
F 6 HOH A 21 721 29 HOH HOH . 
F 6 HOH A 22 722 103 HOH HOH . 
F 6 HOH A 23 723 8 HOH HOH . 
F 6 HOH A 24 724 28 HOH HOH . 
F 6 HOH A 25 725 64 HOH HOH . 
F 6 HOH A 26 726 113 HOH HOH . 
F 6 HOH A 27 727 80 HOH HOH . 
F 6 HOH A 28 728 66 HOH HOH . 
F 6 HOH A 29 729 26 HOH HOH . 
F 6 HOH A 30 730 108 HOH HOH . 
F 6 HOH A 31 731 63 HOH HOH . 
F 6 HOH A 32 732 158 HOH HOH . 
F 6 HOH A 33 733 60 HOH HOH . 
F 6 HOH A 34 734 127 HOH HOH . 
F 6 HOH A 35 735 4 HOH HOH . 
F 6 HOH A 36 736 115 HOH HOH . 
F 6 HOH A 37 737 31 HOH HOH . 
F 6 HOH A 38 738 62 HOH HOH . 
F 6 HOH A 39 739 20 HOH HOH . 
F 6 HOH A 40 740 101 HOH HOH . 
F 6 HOH A 41 741 67 HOH HOH . 
F 6 HOH A 42 742 18 HOH HOH . 
F 6 HOH A 43 743 37 HOH HOH . 
F 6 HOH A 44 744 160 HOH HOH . 
F 6 HOH A 45 745 135 HOH HOH . 
F 6 HOH A 46 746 11 HOH HOH . 
F 6 HOH A 47 747 128 HOH HOH . 
F 6 HOH A 48 748 48 HOH HOH . 
F 6 HOH A 49 749 177 HOH HOH . 
F 6 HOH A 50 750 171 HOH HOH . 
F 6 HOH A 51 751 100 HOH HOH . 
F 6 HOH A 52 752 41 HOH HOH . 
F 6 HOH A 53 753 165 HOH HOH . 
F 6 HOH A 54 754 5 HOH HOH . 
F 6 HOH A 55 755 169 HOH HOH . 
F 6 HOH A 56 756 10 HOH HOH . 
F 6 HOH A 57 757 53 HOH HOH . 
F 6 HOH A 58 758 156 HOH HOH . 
F 6 HOH A 59 759 99 HOH HOH . 
F 6 HOH A 60 760 75 HOH HOH . 
F 6 HOH A 61 761 152 HOH HOH . 
F 6 HOH A 62 762 7 HOH HOH . 
F 6 HOH A 63 763 15 HOH HOH . 
F 6 HOH A 64 764 81 HOH HOH . 
F 6 HOH A 65 765 14 HOH HOH . 
F 6 HOH A 66 766 21 HOH HOH . 
F 6 HOH A 67 767 86 HOH HOH . 
F 6 HOH A 68 768 3 HOH HOH . 
F 6 HOH A 69 769 34 HOH HOH . 
F 6 HOH A 70 770 39 HOH HOH . 
F 6 HOH A 71 771 174 HOH HOH . 
F 6 HOH A 72 772 77 HOH HOH . 
F 6 HOH A 73 773 125 HOH HOH . 
F 6 HOH A 74 774 22 HOH HOH . 
F 6 HOH A 75 775 23 HOH HOH . 
F 6 HOH A 76 776 146 HOH HOH . 
F 6 HOH A 77 777 38 HOH HOH . 
F 6 HOH A 78 778 155 HOH HOH . 
F 6 HOH A 79 779 45 HOH HOH . 
F 6 HOH A 80 780 116 HOH HOH . 
F 6 HOH A 81 781 33 HOH HOH . 
F 6 HOH A 82 782 32 HOH HOH . 
F 6 HOH A 83 783 91 HOH HOH . 
F 6 HOH A 84 784 55 HOH HOH . 
F 6 HOH A 85 785 61 HOH HOH . 
F 6 HOH A 86 786 17 HOH HOH . 
F 6 HOH A 87 787 51 HOH HOH . 
F 6 HOH A 88 788 13 HOH HOH . 
F 6 HOH A 89 789 46 HOH HOH . 
F 6 HOH A 90 790 141 HOH HOH . 
F 6 HOH A 91 791 78 HOH HOH . 
F 6 HOH A 92 792 104 HOH HOH . 
F 6 HOH A 93 793 176 HOH HOH . 
F 6 HOH A 94 794 89 HOH HOH . 
F 6 HOH A 95 795 167 HOH HOH . 
F 6 HOH A 96 796 59 HOH HOH . 
F 6 HOH A 97 797 164 HOH HOH . 
F 6 HOH A 98 798 19 HOH HOH . 
F 6 HOH A 99 799 70 HOH HOH . 
F 6 HOH A 100 800 79 HOH HOH . 
F 6 HOH A 101 801 153 HOH HOH . 
F 6 HOH A 102 802 69 HOH HOH . 
F 6 HOH A 103 803 96 HOH HOH . 
F 6 HOH A 104 804 44 HOH HOH . 
F 6 HOH A 105 805 107 HOH HOH . 
F 6 HOH A 106 806 25 HOH HOH . 
F 6 HOH A 107 807 95 HOH HOH . 
F 6 HOH A 108 808 12 HOH HOH . 
F 6 HOH A 109 809 24 HOH HOH . 
F 6 HOH A 110 810 119 HOH HOH . 
F 6 HOH A 111 811 102 HOH HOH . 
F 6 HOH A 112 812 110 HOH HOH . 
F 6 HOH A 113 813 90 HOH HOH . 
F 6 HOH A 114 814 130 HOH HOH . 
F 6 HOH A 115 815 168 HOH HOH . 
F 6 HOH A 116 816 74 HOH HOH . 
F 6 HOH A 117 817 83 HOH HOH . 
F 6 HOH A 118 818 161 HOH HOH . 
F 6 HOH A 119 819 49 HOH HOH . 
F 6 HOH A 120 820 56 HOH HOH . 
F 6 HOH A 121 821 65 HOH HOH . 
F 6 HOH A 122 822 85 HOH HOH . 
F 6 HOH A 123 823 147 HOH HOH . 
F 6 HOH A 124 824 76 HOH HOH . 
F 6 HOH A 125 825 133 HOH HOH . 
F 6 HOH A 126 826 68 HOH HOH . 
F 6 HOH A 127 827 114 HOH HOH . 
F 6 HOH A 128 828 71 HOH HOH . 
F 6 HOH A 129 829 131 HOH HOH . 
F 6 HOH A 130 830 40 HOH HOH . 
F 6 HOH A 131 831 150 HOH HOH . 
F 6 HOH A 132 832 88 HOH HOH . 
F 6 HOH A 133 833 139 HOH HOH . 
F 6 HOH A 134 834 159 HOH HOH . 
F 6 HOH A 135 835 117 HOH HOH . 
F 6 HOH A 136 836 106 HOH HOH . 
F 6 HOH A 137 837 145 HOH HOH . 
F 6 HOH A 138 838 154 HOH HOH . 
F 6 HOH A 139 839 105 HOH HOH . 
F 6 HOH A 140 840 142 HOH HOH . 
F 6 HOH A 141 841 87 HOH HOH . 
F 6 HOH A 142 842 54 HOH HOH . 
F 6 HOH A 143 843 132 HOH HOH . 
F 6 HOH A 144 844 144 HOH HOH . 
F 6 HOH A 145 845 122 HOH HOH . 
F 6 HOH A 146 846 162 HOH HOH . 
F 6 HOH A 147 847 98 HOH HOH . 
F 6 HOH A 148 848 72 HOH HOH . 
F 6 HOH A 149 849 35 HOH HOH . 
F 6 HOH A 150 850 157 HOH HOH . 
F 6 HOH A 151 851 111 HOH HOH . 
F 6 HOH A 152 852 151 HOH HOH . 
F 6 HOH A 153 853 134 HOH HOH . 
F 6 HOH A 154 854 82 HOH HOH . 
F 6 HOH A 155 855 120 HOH HOH . 
F 6 HOH A 156 856 27 HOH HOH . 
F 6 HOH A 157 857 172 HOH HOH . 
F 6 HOH A 158 858 112 HOH HOH . 
F 6 HOH A 159 859 118 HOH HOH . 
F 6 HOH A 160 860 109 HOH HOH . 
F 6 HOH A 161 861 149 HOH HOH . 
F 6 HOH A 162 862 84 HOH HOH . 
F 6 HOH A 163 863 175 HOH HOH . 
F 6 HOH A 164 864 170 HOH HOH . 
F 6 HOH A 165 865 126 HOH HOH . 
F 6 HOH A 166 866 143 HOH HOH . 
F 6 HOH A 167 867 94 HOH HOH . 
F 6 HOH A 168 868 136 HOH HOH . 
F 6 HOH A 169 869 166 HOH HOH . 
F 6 HOH A 170 870 52 HOH HOH . 
F 6 HOH A 171 871 129 HOH HOH . 
F 6 HOH A 172 872 163 HOH HOH . 
G 6 HOH C 1 701 140 HOH HOH . 
G 6 HOH C 2 702 138 HOH HOH . 
G 6 HOH C 3 703 97 HOH HOH . 
G 6 HOH C 4 704 93 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . E 5 -22.537 1.688 -39.154 1 84.69 ? S DMS 603 A 1 
HETATM 2 O O DMS . . . E 5 -21.898 1.75 -40.467 1 85.14 ? O DMS 603 A 1 
HETATM 3 C C1 DMS . . . E 5 -21.649 2.846 -38.155 1 83.86 ? C1 DMS 603 A 1 
HETATM 4 C C2 DMS . . . E 5 -24.032 2.577 -39.417 1 84.87 ? C2 DMS 603 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#