data_5NIF
#
_model_server_result.job_id            pfNed23TzvRBET4uxMTegA 
_model_server_result.datetime_utc      '2024-11-05 04:13:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nif 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"IA","auth_seq_id":301}' 
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_entry.id    5NIF 
#
_exptl.entry_id    5NIF 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          18 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    16 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.55 
_cell.angle_gamma         90 
_cell.entry_id            5NIF 
_cell.length_a            134.044 
_cell.length_b            302.01 
_cell.length_c            143.84 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5NIF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    30-meric 
_pdbx_struct_assembly.oligomeric_count      30 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 18 GA N N 
? 18 IA N N 
? 18 JA N N 
? 18 MA N N 
? 18 SA N N 
? 18 UA N N 
? 18 ZA N N 
? 18 AB N N 
? 18 GB N N 
? 18 JB N N 
? 18 KB N N 
? 18 LB N N 
? 18 MB N N 
? 18 NB N N 
? 18 QB N N 
? 18 UB N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5NIF 
_atom_sites.fract_transf_matrix[1][1]    0.00746 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003098 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003311 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007528 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
EA 16 CL A 1 301 11 CL CL . 
FA 17 MG C 1 301 10 MG MG . 
GA 18 EDO C 1 302 11 EDO EDO . 
HA 17 MG D 1 301 11 MG MG . 
IA 18 EDO F 1 301 5 EDO EDO . 
JA 18 EDO G 1 301 6 EDO EDO . 
KA 17 MG H 1 201 2 MG MG . 
LA 17 MG I 1 301 9 MG MG . 
MA 18 EDO I 1 302 1 EDO EDO . 
NA 19 GOL J 1 201 4 GOL GOL . 
OA 17 MG J 1 202 3 MG MG . 
PA 16 CL K 1 201 4 CL CL . 
QA 16 CL K 1 202 8 CL CL . 
RA 19 GOL L 1 301 6 GOL GOL . 
SA 18 EDO L 1 302 10 EDO EDO . 
TA 19 GOL M 1 301 9 GOL GOL . 
UA 18 EDO M 1 302 8 EDO EDO . 
VA 16 CL N 1 301 2 CL CL . 
WA 17 MG N 1 302 5 MG MG . 
XA 17 MG N 1 303 7 MG MG . 
YA 16 CL O 1 301 6 CL CL . 
ZA 18 EDO O 1 302 9 EDO EDO . 
AB 18 EDO O 1 303 15 EDO EDO . 
BB 16 CL P 1 301 9 CL CL . 
CB 19 GOL Q 1 301 3 GOL GOL . 
DB 17 MG Q 1 302 8 MG MG . 
EB 16 CL R 1 301 10 CL CL . 
FB 16 CL S 1 301 1 CL CL . 
GB 18 EDO U 1 301 7 EDO EDO . 
HB 16 CL V 1 201 5 CL CL . 
IB 19 GOL V 1 202 2 GOL GOL . 
JB 18 EDO W 1 301 3 EDO EDO . 
KB 18 EDO W 1 302 4 EDO EDO . 
LB 18 EDO W 1 303 16 EDO EDO . 
MB 18 EDO Y 1 201 13 EDO EDO . 
NB 18 EDO Y 1 202 14 EDO EDO . 
OB 19 GOL Z 1 301 5 GOL GOL . 
PB 19 GOL 1 1 301 8 GOL GOL . 
QB 18 EDO 1 1 302 2 EDO EDO . 
RB 16 CL 2 1 301 3 CL CL . 
SB 16 CL 2 1 302 7 CL CL . 
TB 16 CL 2 1 303 12 CL CL . 
UB 18 EDO 2 1 304 12 EDO EDO . 
VB 20 HOH A 1 401 6 HOH HOH . 
VB 20 HOH A 2 402 44 HOH HOH . 
WB 20 HOH C 1 401 72 HOH HOH . 
WB 20 HOH C 2 402 48 HOH HOH . 
XB 20 HOH D 1 401 20 HOH HOH . 
YB 20 HOH G 1 401 75 HOH HOH . 
YB 20 HOH G 2 402 3 HOH HOH . 
ZB 20 HOH H 1 301 7 HOH HOH . 
ZB 20 HOH H 2 302 9 HOH HOH . 
ZB 20 HOH H 3 303 68 HOH HOH . 
ZB 20 HOH H 4 304 49 HOH HOH . 
ZB 20 HOH H 5 305 23 HOH HOH . 
ZB 20 HOH H 6 306 56 HOH HOH . 
ZB 20 HOH H 7 307 12 HOH HOH . 
ZB 20 HOH H 8 308 57 HOH HOH . 
AC 20 HOH I 1 401 28 HOH HOH . 
AC 20 HOH I 2 402 58 HOH HOH . 
BC 20 HOH J 1 301 14 HOH HOH . 
CC 20 HOH L 1 401 21 HOH HOH . 
DC 20 HOH M 1 401 69 HOH HOH . 
DC 20 HOH M 2 402 50 HOH HOH . 
DC 20 HOH M 3 403 25 HOH HOH . 
DC 20 HOH M 4 404 63 HOH HOH . 
EC 20 HOH N 1 401 10 HOH HOH . 
EC 20 HOH N 2 402 73 HOH HOH . 
EC 20 HOH N 3 403 32 HOH HOH . 
EC 20 HOH N 4 404 8 HOH HOH . 
FC 20 HOH O 1 401 71 HOH HOH . 
FC 20 HOH O 2 402 62 HOH HOH . 
FC 20 HOH O 3 403 31 HOH HOH . 
FC 20 HOH O 4 404 74 HOH HOH . 
GC 20 HOH U 1 401 13 HOH HOH . 
GC 20 HOH U 2 402 26 HOH HOH . 
HC 20 HOH V 1 301 15 HOH HOH . 
HC 20 HOH V 2 302 64 HOH HOH . 
HC 20 HOH V 3 303 40 HOH HOH . 
HC 20 HOH V 4 304 61 HOH HOH . 
HC 20 HOH V 5 305 59 HOH HOH . 
IC 20 HOH W 1 401 47 HOH HOH . 
IC 20 HOH W 2 402 11 HOH HOH . 
JC 20 HOH X 1 201 65 HOH HOH . 
JC 20 HOH X 2 202 16 HOH HOH . 
KC 20 HOH Z 1 401 55 HOH HOH . 
KC 20 HOH Z 2 402 34 HOH HOH . 
KC 20 HOH Z 3 403 60 HOH HOH . 
KC 20 HOH Z 4 404 19 HOH HOH . 
KC 20 HOH Z 5 405 46 HOH HOH . 
KC 20 HOH Z 6 406 30 HOH HOH . 
LC 20 HOH 1 1 401 17 HOH HOH . 
LC 20 HOH 1 2 402 36 HOH HOH . 
LC 20 HOH 1 3 403 66 HOH HOH . 
LC 20 HOH 1 4 404 5 HOH HOH . 
LC 20 HOH 1 5 405 67 HOH HOH . 
LC 20 HOH 1 6 406 51 HOH HOH . 
LC 20 HOH 1 7 407 54 HOH HOH . 
LC 20 HOH 1 8 408 52 HOH HOH . 
LC 20 HOH 1 9 409 53 HOH HOH . 
MC 20 HOH 2 1 401 18 HOH HOH . 
MC 20 HOH 2 2 402 37 HOH HOH . 
MC 20 HOH 2 3 403 24 HOH HOH . 
MC 20 HOH 2 4 404 27 HOH HOH . 
MC 20 HOH 2 5 405 2 HOH HOH . 
MC 20 HOH 2 6 406 33 HOH HOH . 
MC 20 HOH 2 7 407 38 HOH HOH . 
MC 20 HOH 2 8 408 39 HOH HOH . 
MC 20 HOH 2 9 409 70 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . IA 18 3.466 -39.412 47.551 1 36.83 ? C1 EDO 301 F 1 
HETATM 2 O O1 EDO . . . IA 18 2.508 -38.414 47.259 1 34.26 ? O1 EDO 301 F 1 
HETATM 3 C C2 EDO . . . IA 18 4.534 -39.513 46.493 1 35.4 ? C2 EDO 301 F 1 
HETATM 4 O O2 EDO . . . IA 18 5.392 -40.584 46.894 1 38.37 ? O2 EDO 301 F 1 
HETATM 5 H H11 EDO . . . IA 18 3.933 -39.191 48.512 1 42.95 ? H11 EDO 301 F 1 
HETATM 6 H H12 EDO . . . IA 18 2.961 -40.377 47.643 1 42.95 ? H12 EDO 301 F 1 
HETATM 7 H HO1 EDO . . . IA 18 1.846 -38.387 47.963 1 39.87 ? HO1 EDO 301 F 1 
HETATM 8 H H21 EDO . . . IA 18 5.096 -38.579 46.428 1 41.23 ? H21 EDO 301 F 1 
HETATM 9 H H22 EDO . . . IA 18 4.088 -39.726 45.519 1 41.23 ? H22 EDO 301 F 1 
HETATM 10 H HO2 EDO . . . IA 18 6.1 -40.69 46.243 1 44.8 ? HO2 EDO 301 F 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    54 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
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