data_5NIF # _model_server_result.job_id 312EcwW9BosxYA-cpTpsQg _model_server_result.datetime_utc '2024-11-05 04:12:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nif # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DB","auth_seq_id":302}' # _entry.id 5NIF # _exptl.entry_id 5NIF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 17 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.55 _cell.angle_gamma 90 _cell.entry_id 5NIF _cell.length_a 134.044 _cell.length_b 302.01 _cell.length_c 143.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NIF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 30-meric _pdbx_struct_assembly.oligomeric_count 30 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 17 FA N N ? 17 HA N N ? 17 KA N N ? 17 LA N N ? 17 OA N N ? 17 WA N N ? 17 XA N N ? 17 DB N N # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5NIF _atom_sites.fract_transf_matrix[1][1] 0.00746 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003098 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003311 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code EA 16 CL A 1 301 11 CL CL . FA 17 MG C 1 301 10 MG MG . GA 18 EDO C 1 302 11 EDO EDO . HA 17 MG D 1 301 11 MG MG . IA 18 EDO F 1 301 5 EDO EDO . JA 18 EDO G 1 301 6 EDO EDO . KA 17 MG H 1 201 2 MG MG . LA 17 MG I 1 301 9 MG MG . MA 18 EDO I 1 302 1 EDO EDO . NA 19 GOL J 1 201 4 GOL GOL . OA 17 MG J 1 202 3 MG MG . PA 16 CL K 1 201 4 CL CL . QA 16 CL K 1 202 8 CL CL . RA 19 GOL L 1 301 6 GOL GOL . SA 18 EDO L 1 302 10 EDO EDO . TA 19 GOL M 1 301 9 GOL GOL . UA 18 EDO M 1 302 8 EDO EDO . VA 16 CL N 1 301 2 CL CL . WA 17 MG N 1 302 5 MG MG . XA 17 MG N 1 303 7 MG MG . YA 16 CL O 1 301 6 CL CL . ZA 18 EDO O 1 302 9 EDO EDO . AB 18 EDO O 1 303 15 EDO EDO . BB 16 CL P 1 301 9 CL CL . CB 19 GOL Q 1 301 3 GOL GOL . DB 17 MG Q 1 302 8 MG MG . EB 16 CL R 1 301 10 CL CL . FB 16 CL S 1 301 1 CL CL . GB 18 EDO U 1 301 7 EDO EDO . HB 16 CL V 1 201 5 CL CL . IB 19 GOL V 1 202 2 GOL GOL . JB 18 EDO W 1 301 3 EDO EDO . KB 18 EDO W 1 302 4 EDO EDO . LB 18 EDO W 1 303 16 EDO EDO . MB 18 EDO Y 1 201 13 EDO EDO . NB 18 EDO Y 1 202 14 EDO EDO . OB 19 GOL Z 1 301 5 GOL GOL . PB 19 GOL 1 1 301 8 GOL GOL . QB 18 EDO 1 1 302 2 EDO EDO . RB 16 CL 2 1 301 3 CL CL . SB 16 CL 2 1 302 7 CL CL . TB 16 CL 2 1 303 12 CL CL . UB 18 EDO 2 1 304 12 EDO EDO . VB 20 HOH A 1 401 6 HOH HOH . VB 20 HOH A 2 402 44 HOH HOH . WB 20 HOH C 1 401 72 HOH HOH . WB 20 HOH C 2 402 48 HOH HOH . XB 20 HOH D 1 401 20 HOH HOH . YB 20 HOH G 1 401 75 HOH HOH . YB 20 HOH G 2 402 3 HOH HOH . ZB 20 HOH H 1 301 7 HOH HOH . ZB 20 HOH H 2 302 9 HOH HOH . ZB 20 HOH H 3 303 68 HOH HOH . ZB 20 HOH H 4 304 49 HOH HOH . ZB 20 HOH H 5 305 23 HOH HOH . ZB 20 HOH H 6 306 56 HOH HOH . ZB 20 HOH H 7 307 12 HOH HOH . ZB 20 HOH H 8 308 57 HOH HOH . AC 20 HOH I 1 401 28 HOH HOH . AC 20 HOH I 2 402 58 HOH HOH . BC 20 HOH J 1 301 14 HOH HOH . CC 20 HOH L 1 401 21 HOH HOH . DC 20 HOH M 1 401 69 HOH HOH . DC 20 HOH M 2 402 50 HOH HOH . DC 20 HOH M 3 403 25 HOH HOH . DC 20 HOH M 4 404 63 HOH HOH . EC 20 HOH N 1 401 10 HOH HOH . EC 20 HOH N 2 402 73 HOH HOH . EC 20 HOH N 3 403 32 HOH HOH . EC 20 HOH N 4 404 8 HOH HOH . FC 20 HOH O 1 401 71 HOH HOH . FC 20 HOH O 2 402 62 HOH HOH . FC 20 HOH O 3 403 31 HOH HOH . FC 20 HOH O 4 404 74 HOH HOH . GC 20 HOH U 1 401 13 HOH HOH . GC 20 HOH U 2 402 26 HOH HOH . HC 20 HOH V 1 301 15 HOH HOH . HC 20 HOH V 2 302 64 HOH HOH . HC 20 HOH V 3 303 40 HOH HOH . HC 20 HOH V 4 304 61 HOH HOH . HC 20 HOH V 5 305 59 HOH HOH . IC 20 HOH W 1 401 47 HOH HOH . IC 20 HOH W 2 402 11 HOH HOH . JC 20 HOH X 1 201 65 HOH HOH . JC 20 HOH X 2 202 16 HOH HOH . KC 20 HOH Z 1 401 55 HOH HOH . KC 20 HOH Z 2 402 34 HOH HOH . KC 20 HOH Z 3 403 60 HOH HOH . KC 20 HOH Z 4 404 19 HOH HOH . KC 20 HOH Z 5 405 46 HOH HOH . KC 20 HOH Z 6 406 30 HOH HOH . LC 20 HOH 1 1 401 17 HOH HOH . LC 20 HOH 1 2 402 36 HOH HOH . LC 20 HOH 1 3 403 66 HOH HOH . LC 20 HOH 1 4 404 5 HOH HOH . LC 20 HOH 1 5 405 67 HOH HOH . LC 20 HOH 1 6 406 51 HOH HOH . LC 20 HOH 1 7 407 54 HOH HOH . LC 20 HOH 1 8 408 52 HOH HOH . LC 20 HOH 1 9 409 53 HOH HOH . MC 20 HOH 2 1 401 18 HOH HOH . MC 20 HOH 2 2 402 37 HOH HOH . MC 20 HOH 2 3 403 24 HOH HOH . MC 20 HOH 2 4 404 27 HOH HOH . MC 20 HOH 2 5 405 2 HOH HOH . MC 20 HOH 2 6 406 33 HOH HOH . MC 20 HOH 2 7 407 38 HOH HOH . MC 20 HOH 2 8 408 39 HOH HOH . MC 20 HOH 2 9 409 70 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id DB _atom_site.label_entity_id 17 _atom_site.Cartn_x -19.755 _atom_site.Cartn_y 51.736 _atom_site.Cartn_z 26.843 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.85 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 302 _atom_site.auth_asym_id Q _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 47 _model_server_stats.create_model_time_ms 251 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #