data_5NIJ
#
_model_server_result.job_id            cE0aVbLV-9qCGmf7RI_vdw 
_model_server_result.datetime_utc      '2024-12-26 20:16:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nij 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":501}' 
#
_entry.id    5NIJ 
#
_exptl.entry_id    5NIJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NIJ 
_cell.length_a            147.83 
_cell.length_b            147.83 
_cell.length_c            101.6 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NIJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,K,L 1 1 
C,D,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 212 A CYS 252 1_555 A SG CYS 226 A CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 390 A CYS 430 1_555 A SG CYS 420 A CYS 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 402 A CYS 442 1_555 A SG CYS 437 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 B SG CYS 212 B CYS 252 1_555 B SG CYS 226 B CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 B SG CYS 390 B CYS 430 1_555 B SG CYS 420 B CYS 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 B SG CYS 402 B CYS 442 1_555 B SG CYS 437 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 C SG CYS 212 C CYS 252 1_555 C SG CYS 226 C CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf8 C SG CYS 390 C CYS 430 1_555 C SG CYS 420 C CYS 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf9 C SG CYS 402 C CYS 442 1_555 C SG CYS 437 C CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf10 D SG CYS 212 D CYS 252 1_555 D SG CYS 226 D CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf11 D SG CYS 390 D CYS 430 1_555 D SG CYS 420 D CYS 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 D SG CYS 402 D CYS 442 1_555 D SG CYS 437 D CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A C SER 135 A SER 175 1_555 A N SNN 136 A SNN 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A C SNN 136 A SNN 176 1_555 A N HIS 137 A HIS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 A C5 SNN 136 A SNN 176 1_555 A N HIS 137 A HIS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale4 A C ALA 178 A ALA 218 1_555 A N SCH 179 A SCH 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 A C SCH 179 A SCH 219 1_555 A N GLU 180 A GLU 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 B C SER 135 B SER 175 1_555 B N SNN 136 B SNN 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale7 B C SNN 136 B SNN 176 1_555 B N HIS 137 B HIS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale8 B C5 SNN 136 B SNN 176 1_555 B N HIS 137 B HIS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale9 B C ALA 178 B ALA 218 1_555 B N SCH 179 B SCH 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale10 B C SCH 179 B SCH 219 1_555 B N GLU 180 B GLU 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale11 C C SER 135 C SER 175 1_555 C N SNN 136 C SNN 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale12 C C SNN 136 C SNN 176 1_555 C N HIS 137 C HIS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale13 C C5 SNN 136 C SNN 176 1_555 C N HIS 137 C HIS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale14 C C ALA 178 C ALA 218 1_555 C N SCH 179 C SCH 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale15 C C SCH 179 C SCH 219 1_555 C N GLU 180 C GLU 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale16 D C SER 135 D SER 175 1_555 D N SNN 136 D SNN 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale17 D C SNN 136 D SNN 176 1_555 D N HIS 137 D HIS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale18 D C5 SNN 136 D SNN 176 1_555 D N HIS 137 D HIS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale19 D C ALA 178 D ALA 218 1_555 D N SCH 179 D SCH 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale20 D C SCH 179 D SCH 219 1_555 D N GLU 180 D GLU 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 341 n n 
S O2 SO4 doub 342 n n 
S O3 SO4 sing 343 n n 
S O4 SO4 sing 344 n n 
#
_atom_sites.entry_id                     5NIJ 
_atom_sites.fract_transf_matrix[1][1]    0.006765 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006765 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009843 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 501 2 SO4 SO4 . 
F 3 CIT A 1 502 1 CIT CIT . 
G 2 SO4 B 1 501 1 SO4 SO4 . 
H 2 SO4 B 1 502 4 SO4 SO4 . 
I 2 SO4 C 1 501 5 SO4 SO4 . 
J 2 SO4 D 1 501 3 SO4 SO4 . 
K 4 HOH A 1 601 30 HOH HOH . 
K 4 HOH A 2 602 44 HOH HOH . 
K 4 HOH A 3 603 36 HOH HOH . 
K 4 HOH A 4 604 35 HOH HOH . 
K 4 HOH A 5 605 41 HOH HOH . 
K 4 HOH A 6 606 57 HOH HOH . 
K 4 HOH A 7 607 9 HOH HOH . 
K 4 HOH A 8 608 62 HOH HOH . 
K 4 HOH A 9 609 43 HOH HOH . 
K 4 HOH A 10 610 18 HOH HOH . 
K 4 HOH A 11 611 65 HOH HOH . 
K 4 HOH A 12 612 42 HOH HOH . 
K 4 HOH A 13 613 37 HOH HOH . 
K 4 HOH A 14 614 72 HOH HOH . 
K 4 HOH A 15 615 11 HOH HOH . 
K 4 HOH A 16 616 1 HOH HOH . 
K 4 HOH A 17 617 90 HOH HOH . 
K 4 HOH A 18 618 6 HOH HOH . 
K 4 HOH A 19 619 32 HOH HOH . 
K 4 HOH A 20 620 2 HOH HOH . 
K 4 HOH A 21 621 25 HOH HOH . 
K 4 HOH A 22 622 31 HOH HOH . 
K 4 HOH A 23 623 39 HOH HOH . 
K 4 HOH A 24 624 38 HOH HOH . 
K 4 HOH A 25 625 29 HOH HOH . 
K 4 HOH A 26 626 14 HOH HOH . 
K 4 HOH A 27 627 54 HOH HOH . 
K 4 HOH A 28 628 45 HOH HOH . 
K 4 HOH A 29 629 52 HOH HOH . 
K 4 HOH A 30 630 78 HOH HOH . 
K 4 HOH A 31 631 76 HOH HOH . 
K 4 HOH A 32 632 66 HOH HOH . 
K 4 HOH A 33 633 86 HOH HOH . 
L 4 HOH B 1 601 83 HOH HOH . 
L 4 HOH B 2 602 7 HOH HOH . 
L 4 HOH B 3 603 55 HOH HOH . 
L 4 HOH B 4 604 46 HOH HOH . 
L 4 HOH B 5 605 74 HOH HOH . 
L 4 HOH B 6 606 75 HOH HOH . 
L 4 HOH B 7 607 5 HOH HOH . 
L 4 HOH B 8 608 50 HOH HOH . 
L 4 HOH B 9 609 20 HOH HOH . 
L 4 HOH B 10 610 16 HOH HOH . 
L 4 HOH B 11 611 12 HOH HOH . 
L 4 HOH B 12 612 19 HOH HOH . 
L 4 HOH B 13 613 71 HOH HOH . 
L 4 HOH B 14 614 28 HOH HOH . 
L 4 HOH B 15 615 47 HOH HOH . 
L 4 HOH B 16 616 80 HOH HOH . 
L 4 HOH B 17 617 67 HOH HOH . 
L 4 HOH B 18 618 34 HOH HOH . 
L 4 HOH B 19 619 58 HOH HOH . 
L 4 HOH B 20 620 70 HOH HOH . 
L 4 HOH B 21 621 21 HOH HOH . 
L 4 HOH B 22 622 87 HOH HOH . 
L 4 HOH B 23 623 85 HOH HOH . 
L 4 HOH B 24 624 3 HOH HOH . 
L 4 HOH B 25 625 64 HOH HOH . 
L 4 HOH B 26 626 73 HOH HOH . 
L 4 HOH B 27 627 26 HOH HOH . 
L 4 HOH B 28 628 84 HOH HOH . 
L 4 HOH B 29 629 88 HOH HOH . 
M 4 HOH C 1 601 63 HOH HOH . 
M 4 HOH C 2 602 48 HOH HOH . 
M 4 HOH C 3 603 10 HOH HOH . 
M 4 HOH C 4 604 4 HOH HOH . 
M 4 HOH C 5 605 49 HOH HOH . 
M 4 HOH C 6 606 60 HOH HOH . 
M 4 HOH C 7 607 13 HOH HOH . 
M 4 HOH C 8 608 68 HOH HOH . 
M 4 HOH C 9 609 61 HOH HOH . 
M 4 HOH C 10 610 81 HOH HOH . 
M 4 HOH C 11 611 33 HOH HOH . 
M 4 HOH C 12 612 40 HOH HOH . 
N 4 HOH D 1 601 89 HOH HOH . 
N 4 HOH D 2 602 8 HOH HOH . 
N 4 HOH D 3 603 51 HOH HOH . 
N 4 HOH D 4 604 17 HOH HOH . 
N 4 HOH D 5 605 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . J 2 41.473 -38.157 46.882 1 121.17 ? S SO4 501 D 1 
HETATM 2 O O1 SO4 . . . J 2 41.5 -37.353 45.638 1 83.04 ? O1 SO4 501 D 1 
HETATM 3 O O2 SO4 . . . J 2 40.614 -37.484 47.883 1 96.84 ? O2 SO4 501 D 1 
HETATM 4 O O3 SO4 . . . J 2 40.93 -39.505 46.591 1 94.23 ? O3 SO4 501 D 1 
HETATM 5 O O4 SO4 . . . J 2 42.849 -38.285 47.414 1 100.63 ? O4 SO4 501 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           5 
#