data_5NIM # _model_server_result.job_id hn7WRQ9mntMsa6UTO-sHtQ _model_server_result.datetime_utc '2025-01-10 23:14:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nim # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5NIM # _exptl.entry_id 5NIM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 288.302 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[1-(2-hydroxyethyl)pyrrolo[3,4-c]pyrazol-5-yl]-(5-propyl-1,2-oxazol-3-yl)methanone' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NIM _cell.length_a 122.544 _cell.length_b 122.544 _cell.length_c 33.815 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NIM _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CE1 PHE 184 A PHE 184 1_555 B CAA 8YE . A 8YE 301 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.591 ? covale ? covale2 A CZ PHE 184 A PHE 184 1_555 B CAA 8YE . A 8YE 301 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.481 ? # _chem_comp.formula 'C14 H16 N4 O3' _chem_comp.formula_weight 288.302 _chem_comp.id 8YE _chem_comp.mon_nstd_flag . _chem_comp.name '[1-(2-hydroxyethyl)pyrrolo[3,4-c]pyrazol-5-yl]-(5-propyl-1,2-oxazol-3-yl)methanone' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5NIM _atom_sites.fract_transf_matrix[1][1] 0.00816 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00816 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029573 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8YE A 1 301 1 8YE LIG . C 3 SO4 A 1 302 1 SO4 SO4 . D 4 HOH A 1 401 110 HOH HOH . D 4 HOH A 2 402 95 HOH HOH . D 4 HOH A 3 403 145 HOH HOH . D 4 HOH A 4 404 128 HOH HOH . D 4 HOH A 5 405 115 HOH HOH . D 4 HOH A 6 406 129 HOH HOH . D 4 HOH A 7 407 133 HOH HOH . D 4 HOH A 8 408 131 HOH HOH . D 4 HOH A 9 409 116 HOH HOH . D 4 HOH A 10 410 90 HOH HOH . D 4 HOH A 11 411 112 HOH HOH . D 4 HOH A 12 412 109 HOH HOH . D 4 HOH A 13 413 91 HOH HOH . D 4 HOH A 14 414 141 HOH HOH . D 4 HOH A 15 415 126 HOH HOH . D 4 HOH A 16 416 118 HOH HOH . D 4 HOH A 17 417 57 HOH HOH . D 4 HOH A 18 418 29 HOH HOH . D 4 HOH A 19 419 140 HOH HOH . D 4 HOH A 20 420 1 HOH HOH . D 4 HOH A 21 421 7 HOH HOH . D 4 HOH A 22 422 120 HOH HOH . D 4 HOH A 23 423 123 HOH HOH . D 4 HOH A 24 424 11 HOH HOH . D 4 HOH A 25 425 85 HOH HOH . D 4 HOH A 26 426 121 HOH HOH . D 4 HOH A 27 427 16 HOH HOH . D 4 HOH A 28 428 13 HOH HOH . D 4 HOH A 29 429 99 HOH HOH . D 4 HOH A 30 430 8 HOH HOH . D 4 HOH A 31 431 44 HOH HOH . D 4 HOH A 32 432 30 HOH HOH . D 4 HOH A 33 433 33 HOH HOH . D 4 HOH A 34 434 17 HOH HOH . D 4 HOH A 35 435 27 HOH HOH . D 4 HOH A 36 436 122 HOH HOH . D 4 HOH A 37 437 53 HOH HOH . D 4 HOH A 38 438 23 HOH HOH . D 4 HOH A 39 439 5 HOH HOH . D 4 HOH A 40 440 124 HOH HOH . D 4 HOH A 41 441 64 HOH HOH . D 4 HOH A 42 442 43 HOH HOH . D 4 HOH A 43 443 119 HOH HOH . D 4 HOH A 44 444 25 HOH HOH . D 4 HOH A 45 445 19 HOH HOH . D 4 HOH A 46 446 72 HOH HOH . D 4 HOH A 47 447 68 HOH HOH . D 4 HOH A 48 448 3 HOH HOH . D 4 HOH A 49 449 39 HOH HOH . D 4 HOH A 50 450 14 HOH HOH . D 4 HOH A 51 451 148 HOH HOH . D 4 HOH A 52 452 38 HOH HOH . D 4 HOH A 53 453 86 HOH HOH . D 4 HOH A 54 454 105 HOH HOH . D 4 HOH A 55 455 51 HOH HOH . D 4 HOH A 56 456 2 HOH HOH . D 4 HOH A 57 457 49 HOH HOH . D 4 HOH A 58 458 96 HOH HOH . D 4 HOH A 59 459 117 HOH HOH . D 4 HOH A 60 460 6 HOH HOH . D 4 HOH A 61 461 62 HOH HOH . D 4 HOH A 62 462 134 HOH HOH . D 4 HOH A 63 463 127 HOH HOH . D 4 HOH A 64 464 32 HOH HOH . D 4 HOH A 65 465 67 HOH HOH . D 4 HOH A 66 466 81 HOH HOH . D 4 HOH A 67 467 113 HOH HOH . D 4 HOH A 68 468 92 HOH HOH . D 4 HOH A 69 469 55 HOH HOH . D 4 HOH A 70 470 28 HOH HOH . D 4 HOH A 71 471 26 HOH HOH . D 4 HOH A 72 472 106 HOH HOH . D 4 HOH A 73 473 59 HOH HOH . D 4 HOH A 74 474 137 HOH HOH . D 4 HOH A 75 475 73 HOH HOH . D 4 HOH A 76 476 58 HOH HOH . D 4 HOH A 77 477 102 HOH HOH . D 4 HOH A 78 478 18 HOH HOH . D 4 HOH A 79 479 132 HOH HOH . D 4 HOH A 80 480 20 HOH HOH . D 4 HOH A 81 481 104 HOH HOH . D 4 HOH A 82 482 52 HOH HOH . D 4 HOH A 83 483 142 HOH HOH . D 4 HOH A 84 484 41 HOH HOH . D 4 HOH A 85 485 35 HOH HOH . D 4 HOH A 86 486 47 HOH HOH . D 4 HOH A 87 487 9 HOH HOH . D 4 HOH A 88 488 40 HOH HOH . D 4 HOH A 89 489 45 HOH HOH . D 4 HOH A 90 490 4 HOH HOH . D 4 HOH A 91 491 12 HOH HOH . D 4 HOH A 92 492 84 HOH HOH . D 4 HOH A 93 493 74 HOH HOH . D 4 HOH A 94 494 75 HOH HOH . D 4 HOH A 95 495 93 HOH HOH . D 4 HOH A 96 496 31 HOH HOH . D 4 HOH A 97 497 77 HOH HOH . D 4 HOH A 98 498 143 HOH HOH . D 4 HOH A 99 499 37 HOH HOH . D 4 HOH A 100 500 10 HOH HOH . D 4 HOH A 101 501 101 HOH HOH . D 4 HOH A 102 502 139 HOH HOH . D 4 HOH A 103 503 100 HOH HOH . D 4 HOH A 104 504 107 HOH HOH . D 4 HOH A 105 505 15 HOH HOH . D 4 HOH A 106 506 79 HOH HOH . D 4 HOH A 107 507 111 HOH HOH . D 4 HOH A 108 508 147 HOH HOH . D 4 HOH A 109 509 76 HOH HOH . D 4 HOH A 110 510 108 HOH HOH . D 4 HOH A 111 511 61 HOH HOH . D 4 HOH A 112 512 80 HOH HOH . D 4 HOH A 113 513 114 HOH HOH . D 4 HOH A 114 514 135 HOH HOH . D 4 HOH A 115 515 94 HOH HOH . D 4 HOH A 116 516 82 HOH HOH . D 4 HOH A 117 517 42 HOH HOH . D 4 HOH A 118 518 88 HOH HOH . D 4 HOH A 119 519 125 HOH HOH . D 4 HOH A 120 520 97 HOH HOH . D 4 HOH A 121 521 103 HOH HOH . D 4 HOH A 122 522 36 HOH HOH . D 4 HOH A 123 523 65 HOH HOH . D 4 HOH A 124 524 21 HOH HOH . D 4 HOH A 125 525 146 HOH HOH . D 4 HOH A 126 526 136 HOH HOH . D 4 HOH A 127 527 89 HOH HOH . D 4 HOH A 128 528 50 HOH HOH . D 4 HOH A 129 529 60 HOH HOH . D 4 HOH A 130 530 138 HOH HOH . D 4 HOH A 131 531 54 HOH HOH . D 4 HOH A 132 532 69 HOH HOH . D 4 HOH A 133 533 48 HOH HOH . D 4 HOH A 134 534 66 HOH HOH . D 4 HOH A 135 535 130 HOH HOH . D 4 HOH A 136 536 34 HOH HOH . D 4 HOH A 137 537 87 HOH HOH . D 4 HOH A 138 538 22 HOH HOH . D 4 HOH A 139 539 56 HOH HOH . D 4 HOH A 140 540 71 HOH HOH . D 4 HOH A 141 541 46 HOH HOH . D 4 HOH A 142 542 70 HOH HOH . D 4 HOH A 143 543 24 HOH HOH . D 4 HOH A 144 544 98 HOH HOH . D 4 HOH A 145 545 63 HOH HOH . D 4 HOH A 146 546 83 HOH HOH . D 4 HOH A 147 547 144 HOH HOH . D 4 HOH A 148 548 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 8YE . A . B 2 19.069 32.884 -1.632 0.5 31.08 ? CAA 8YE 301 A 1 HETATM 2 C CAA 8YE . B . B 2 3.438 27.113 4.984 0.5 40.25 ? CAA 8YE 301 A 1 HETATM 3 C CAB 8YE . A . B 2 17.923 32.155 -0.902 0.5 30.81 ? CAB 8YE 301 A 1 HETATM 4 C CAB 8YE . B . B 2 4.608 27.512 4.101 0.5 37.07 ? CAB 8YE 301 A 1 HETATM 5 C CAC 8YE . A . B 2 18.378 31.695 0.479 0.5 32.98 ? CAC 8YE 301 A 1 HETATM 6 C CAC 8YE . B . B 2 5.682 26.44 4.243 0.5 33.14 ? CAC 8YE 301 A 1 HETATM 7 C CAD 8YE . A . B 2 17.292 30.845 1.171 0.5 35.56 ? CAD 8YE 301 A 1 HETATM 8 C CAD 8YE . B . B 2 7.03 26.979 3.772 0.5 36.75 ? CAD 8YE 301 A 1 HETATM 9 C CAE 8YE . A . B 2 16.19 30.351 0.606 0.5 34.68 ? CAE 8YE 301 A 1 HETATM 10 C CAE 8YE . B . B 2 8.007 27.468 4.55 0.5 33.84 ? CAE 8YE 301 A 1 HETATM 11 O OAH 8YE . A . B 2 17.344 30.451 2.457 0.5 42.51 ? OAH 8YE 301 A 1 HETATM 12 O OAH 8YE . B . B 2 7.421 26.967 2.463 0.5 30.8 ? OAH 8YE 301 A 1 HETATM 13 N NAG 8YE . A . B 2 16.193 29.691 2.71 0.5 36.83 ? NAG 8YE 301 A 1 HETATM 14 N NAG 8YE . B . B 2 8.702 27.558 2.493 0.5 33.35 ? NAG 8YE 301 A 1 HETATM 15 C CAF 8YE . A . B 2 15.512 29.703 1.565 0.5 37.88 ? CAF 8YE 301 A 1 HETATM 16 C CAF 8YE . B . B 2 9.015 27.849 3.753 0.5 32.93 ? CAF 8YE 301 A 1 HETATM 17 C CAI 8YE . A . B 2 14.348 29.103 1.358 0.5 40.54 ? CAI 8YE 301 A 1 HETATM 18 C CAI 8YE . B . B 2 10.191 28.385 4.153 0.5 26.51 ? CAI 8YE 301 A 1 HETATM 19 O OAJ 8YE . A . B 2 14.152 28.649 0.224 0.5 39.83 ? OAJ 8YE 301 A 1 HETATM 20 O OAJ 8YE . B . B 2 10.301 28.738 5.337 0.5 33.54 ? OAJ 8YE 301 A 1 HETATM 21 N NAK 8YE . A . B 2 13.394 29.086 2.332 0.5 32.02 ? NAK 8YE 301 A 1 HETATM 22 N NAK 8YE . B . B 2 11.219 28.545 3.274 0.5 26.88 ? NAK 8YE 301 A 1 HETATM 23 C CAL 8YE . A . B 2 13.328 29.634 3.564 0.5 32.46 ? CAL 8YE 301 A 1 HETATM 24 C CAL 8YE . B . B 2 11.208 28.231 1.969 0.5 28.03 ? CAL 8YE 301 A 1 HETATM 25 C CAR 8YE . A . B 2 12.262 28.398 2.17 0.5 27.96 ? CAR 8YE 301 A 1 HETATM 26 C CAR 8YE . B . B 2 12.446 29.058 3.503 0.5 27.74 ? CAR 8YE 301 A 1 HETATM 27 C CAQ 8YE . A . B 2 11.491 28.522 3.261 0.5 29.91 ? CAQ 8YE 301 A 1 HETATM 28 C CAQ 8YE . B . B 2 13.192 29.078 2.354 0.5 22.87 ? CAQ 8YE 301 A 1 HETATM 29 C CAM 8YE . A . B 2 12.171 29.248 4.145 0.5 27.74 ? CAM 8YE 301 A 1 HETATM 30 C CAM 8YE . B . B 2 12.433 28.489 1.43 0.5 21.12 ? CAM 8YE 301 A 1 HETATM 31 C CAN 8YE . A . B 2 11.389 29.384 5.234 0.5 27.42 ? CAN 8YE 301 A 1 HETATM 32 C CAN 8YE . B . B 2 13.105 28.563 0.287 0.5 21.57 ? CAN 8YE 301 A 1 HETATM 33 N NAO 8YE . A . B 2 10.257 28.716 5.027 0.5 35.94 ? NAO 8YE 301 A 1 HETATM 34 N NAO 8YE . B . B 2 14.365 29.029 0.47 0.5 18.36 ? NAO 8YE 301 A 1 HETATM 35 N NAP 8YE . A . B 2 10.308 28.183 3.798 0.5 27.79 ? NAP 8YE 301 A 1 HETATM 36 N NAP 8YE . B . B 2 14.401 29.399 1.794 0.5 26.15 ? NAP 8YE 301 A 1 HETATM 37 C CAS 8YE . A . B 2 9.171 27.371 3.297 0.5 40.52 ? CAS 8YE 301 A 1 HETATM 38 C CAS 8YE . B . B 2 15.629 30.004 2.468 0.5 29.08 ? CAS 8YE 301 A 1 HETATM 39 C CAT 8YE . A . B 2 8.019 27.462 4.305 0.5 41.8 ? CAT 8YE 301 A 1 HETATM 40 C CAT 8YE . B . B 2 16.958 29.82 1.682 0.5 32.68 ? CAT 8YE 301 A 1 HETATM 41 O OAU 8YE . A . B 2 6.797 26.948 3.734 0.5 49.89 ? OAU 8YE 301 A 1 HETATM 42 O OAU 8YE . B . B 2 17.068 30.817 0.652 0.5 28.73 ? OAU 8YE 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 42 #