data_5NIO # _model_server_result.job_id GdwRb_UZWwQ0TY5FL2KfbQ _model_server_result.datetime_utc '2024-11-21 23:35:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nio # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5NIO # _exptl.entry_id 5NIO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 198.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-butyl-4-methyl-piperidine-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NIO _cell.length_a 120.083 _cell.length_b 120.083 _cell.length_c 33.659 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NIO _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H22 N2 O' _chem_comp.formula_weight 198.305 _chem_comp.id 8YH _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-butyl-4-methyl-piperidine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAN CAM 8YH sing 1 n n OAC CAA 8YH doub 2 n n CAJ CAL 8YH sing 3 n n CAJ NAF 8YH sing 4 n n CAM CAL 8YH sing 5 n n CAA NAF 8YH sing 6 n n CAA NAB 8YH sing 7 n n CAD CAG 8YH sing 8 n n CAD NAB 8YH sing 9 n n CAG CAI 8YH sing 10 n n NAB CAE 8YH sing 11 n n CAI CAK 8YH sing 12 n n CAI CAH 8YH sing 13 n n CAE CAH 8YH sing 14 n n CAE H1 8YH sing 15 n n CAH H2 8YH sing 16 n n CAK H3 8YH sing 17 n n CAK H4 8YH sing 18 n n CAK H5 8YH sing 19 n n CAG H6 8YH sing 20 n n CAD H7 8YH sing 21 n n NAF H8 8YH sing 22 n n CAJ H9 8YH sing 23 n n CAJ H10 8YH sing 24 n n CAL H11 8YH sing 25 n n CAL H12 8YH sing 26 n n CAM H13 8YH sing 27 n n CAM H14 8YH sing 28 n n CAN H15 8YH sing 29 n n CAN H16 8YH sing 30 n n CAN H17 8YH sing 31 n n CAE H18 8YH sing 32 n n CAH H19 8YH sing 33 n n CAI H20 8YH sing 34 n n CAG H21 8YH sing 35 n n CAD H22 8YH sing 36 n n # _atom_sites.entry_id 5NIO _atom_sites.fract_transf_matrix[1][1] 0.008328 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008328 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8YH A 1 301 1 8YH LIG . C 3 SO4 A 1 302 1 SO4 SO4 . D 4 HOH A 1 401 75 HOH HOH . D 4 HOH A 2 402 22 HOH HOH . D 4 HOH A 3 403 50 HOH HOH . D 4 HOH A 4 404 39 HOH HOH . D 4 HOH A 5 405 80 HOH HOH . D 4 HOH A 6 406 4 HOH HOH . D 4 HOH A 7 407 89 HOH HOH . D 4 HOH A 8 408 72 HOH HOH . D 4 HOH A 9 409 110 HOH HOH . D 4 HOH A 10 410 58 HOH HOH . D 4 HOH A 11 411 90 HOH HOH . D 4 HOH A 12 412 93 HOH HOH . D 4 HOH A 13 413 64 HOH HOH . D 4 HOH A 14 414 2 HOH HOH . D 4 HOH A 15 415 42 HOH HOH . D 4 HOH A 16 416 9 HOH HOH . D 4 HOH A 17 417 74 HOH HOH . D 4 HOH A 18 418 6 HOH HOH . D 4 HOH A 19 419 55 HOH HOH . D 4 HOH A 20 420 95 HOH HOH . D 4 HOH A 21 421 5 HOH HOH . D 4 HOH A 22 422 103 HOH HOH . D 4 HOH A 23 423 15 HOH HOH . D 4 HOH A 24 424 23 HOH HOH . D 4 HOH A 25 425 18 HOH HOH . D 4 HOH A 26 426 78 HOH HOH . D 4 HOH A 27 427 57 HOH HOH . D 4 HOH A 28 428 38 HOH HOH . D 4 HOH A 29 429 71 HOH HOH . D 4 HOH A 30 430 21 HOH HOH . D 4 HOH A 31 431 47 HOH HOH . D 4 HOH A 32 432 96 HOH HOH . D 4 HOH A 33 433 14 HOH HOH . D 4 HOH A 34 434 1 HOH HOH . D 4 HOH A 35 435 27 HOH HOH . D 4 HOH A 36 436 60 HOH HOH . D 4 HOH A 37 437 117 HOH HOH . D 4 HOH A 38 438 8 HOH HOH . D 4 HOH A 39 439 43 HOH HOH . D 4 HOH A 40 440 111 HOH HOH . D 4 HOH A 41 441 48 HOH HOH . D 4 HOH A 42 442 46 HOH HOH . D 4 HOH A 43 443 85 HOH HOH . D 4 HOH A 44 444 65 HOH HOH . D 4 HOH A 45 445 107 HOH HOH . D 4 HOH A 46 446 83 HOH HOH . D 4 HOH A 47 447 45 HOH HOH . D 4 HOH A 48 448 7 HOH HOH . D 4 HOH A 49 449 69 HOH HOH . D 4 HOH A 50 450 92 HOH HOH . D 4 HOH A 51 451 81 HOH HOH . D 4 HOH A 52 452 41 HOH HOH . D 4 HOH A 53 453 3 HOH HOH . D 4 HOH A 54 454 97 HOH HOH . D 4 HOH A 55 455 82 HOH HOH . D 4 HOH A 56 456 37 HOH HOH . D 4 HOH A 57 457 19 HOH HOH . D 4 HOH A 58 458 87 HOH HOH . D 4 HOH A 59 459 119 HOH HOH . D 4 HOH A 60 460 56 HOH HOH . D 4 HOH A 61 461 31 HOH HOH . D 4 HOH A 62 462 10 HOH HOH . D 4 HOH A 63 463 11 HOH HOH . D 4 HOH A 64 464 77 HOH HOH . D 4 HOH A 65 465 67 HOH HOH . D 4 HOH A 66 466 16 HOH HOH . D 4 HOH A 67 467 100 HOH HOH . D 4 HOH A 68 468 108 HOH HOH . D 4 HOH A 69 469 115 HOH HOH . D 4 HOH A 70 470 105 HOH HOH . D 4 HOH A 71 471 13 HOH HOH . D 4 HOH A 72 472 32 HOH HOH . D 4 HOH A 73 473 88 HOH HOH . D 4 HOH A 74 474 118 HOH HOH . D 4 HOH A 75 475 104 HOH HOH . D 4 HOH A 76 476 113 HOH HOH . D 4 HOH A 77 477 59 HOH HOH . D 4 HOH A 78 478 52 HOH HOH . D 4 HOH A 79 479 70 HOH HOH . D 4 HOH A 80 480 99 HOH HOH . D 4 HOH A 81 481 84 HOH HOH . D 4 HOH A 82 482 79 HOH HOH . D 4 HOH A 83 483 54 HOH HOH . D 4 HOH A 84 484 44 HOH HOH . D 4 HOH A 85 485 53 HOH HOH . D 4 HOH A 86 486 30 HOH HOH . D 4 HOH A 87 487 112 HOH HOH . D 4 HOH A 88 488 109 HOH HOH . D 4 HOH A 89 489 20 HOH HOH . D 4 HOH A 90 490 17 HOH HOH . D 4 HOH A 91 491 114 HOH HOH . D 4 HOH A 92 492 25 HOH HOH . D 4 HOH A 93 493 40 HOH HOH . D 4 HOH A 94 494 12 HOH HOH . D 4 HOH A 95 495 68 HOH HOH . D 4 HOH A 96 496 73 HOH HOH . D 4 HOH A 97 497 120 HOH HOH . D 4 HOH A 98 498 76 HOH HOH . D 4 HOH A 99 499 24 HOH HOH . D 4 HOH A 100 500 91 HOH HOH . D 4 HOH A 101 501 66 HOH HOH . D 4 HOH A 102 502 86 HOH HOH . D 4 HOH A 103 503 33 HOH HOH . D 4 HOH A 104 504 49 HOH HOH . D 4 HOH A 105 505 116 HOH HOH . D 4 HOH A 106 506 62 HOH HOH . D 4 HOH A 107 507 29 HOH HOH . D 4 HOH A 108 508 61 HOH HOH . D 4 HOH A 109 509 94 HOH HOH . D 4 HOH A 110 510 35 HOH HOH . D 4 HOH A 111 511 26 HOH HOH . D 4 HOH A 112 512 51 HOH HOH . D 4 HOH A 113 513 106 HOH HOH . D 4 HOH A 114 514 36 HOH HOH . D 4 HOH A 115 515 102 HOH HOH . D 4 HOH A 116 516 28 HOH HOH . D 4 HOH A 117 517 34 HOH HOH . D 4 HOH A 118 518 63 HOH HOH . D 4 HOH A 119 519 98 HOH HOH . D 4 HOH A 120 520 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAE 8YH . . . B 2 -10.33 -26.774 4.071 1 19.07 ? CAE 8YH 301 A 1 HETATM 2 C CAH 8YH . . . B 2 -9.013 -26.818 4.63 1 23.02 ? CAH 8YH 301 A 1 HETATM 3 C CAI 8YH . . . B 2 -8.004 -26.068 4.005 1 22.48 ? CAI 8YH 301 A 1 HETATM 4 C CAK 8YH . . . B 2 -6.699 -25.981 4.543 1 28.6 ? CAK 8YH 301 A 1 HETATM 5 C CAG 8YH . . . B 2 -8.064 -25.993 2.599 1 22.27 ? CAG 8YH 301 A 1 HETATM 6 C CAD 8YH . . . B 2 -9.33 -25.841 2.032 1 23.35 ? CAD 8YH 301 A 1 HETATM 7 N NAB 8YH . . . B 2 -10.397 -26.523 2.629 1 19.15 ? NAB 8YH 301 A 1 HETATM 8 C CAA 8YH . . . B 2 -11.575 -26.634 1.98 1 21.97 ? CAA 8YH 301 A 1 HETATM 9 O OAC 8YH . . . B 2 -11.647 -26.505 0.715 1 22.69 ? OAC 8YH 301 A 1 HETATM 10 N NAF 8YH . . . B 2 -12.66 -27.032 2.609 1 20.39 ? NAF 8YH 301 A 1 HETATM 11 C CAJ 8YH . . . B 2 -13.924 -27.302 1.832 1 21.12 ? CAJ 8YH 301 A 1 HETATM 12 C CAL 8YH . . . B 2 -14.701 -28.336 2.565 1 21.79 ? CAL 8YH 301 A 1 HETATM 13 C CAM 8YH . . . B 2 -15.989 -28.789 1.874 1 22.6 ? CAM 8YH 301 A 1 HETATM 14 C CAN 8YH . . . B 2 -15.788 -29.362 0.531 1 24.09 ? CAN 8YH 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #