data_5NIO # _model_server_result.job_id 25DgyfKJn3qQSqs15jHbmQ _model_server_result.datetime_utc '2025-07-16 14:57:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nio # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5NIO # _exptl.entry_id 5NIO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NIO _cell.length_a 120.083 _cell.length_b 120.083 _cell.length_c 33.659 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NIO _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 313 n n S O2 SO4 doub 314 n n S O3 SO4 sing 315 n n S O4 SO4 sing 316 n n # _atom_sites.entry_id 5NIO _atom_sites.fract_transf_matrix[1][1] 0.008328 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008328 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8YH A 1 301 1 8YH LIG . C 3 SO4 A 1 302 1 SO4 SO4 . D 4 HOH A 1 401 75 HOH HOH . D 4 HOH A 2 402 22 HOH HOH . D 4 HOH A 3 403 50 HOH HOH . D 4 HOH A 4 404 39 HOH HOH . D 4 HOH A 5 405 80 HOH HOH . D 4 HOH A 6 406 4 HOH HOH . D 4 HOH A 7 407 89 HOH HOH . D 4 HOH A 8 408 72 HOH HOH . D 4 HOH A 9 409 110 HOH HOH . D 4 HOH A 10 410 58 HOH HOH . D 4 HOH A 11 411 90 HOH HOH . D 4 HOH A 12 412 93 HOH HOH . D 4 HOH A 13 413 64 HOH HOH . D 4 HOH A 14 414 2 HOH HOH . D 4 HOH A 15 415 42 HOH HOH . D 4 HOH A 16 416 9 HOH HOH . D 4 HOH A 17 417 74 HOH HOH . D 4 HOH A 18 418 6 HOH HOH . D 4 HOH A 19 419 55 HOH HOH . D 4 HOH A 20 420 95 HOH HOH . D 4 HOH A 21 421 5 HOH HOH . D 4 HOH A 22 422 103 HOH HOH . D 4 HOH A 23 423 15 HOH HOH . D 4 HOH A 24 424 23 HOH HOH . D 4 HOH A 25 425 18 HOH HOH . D 4 HOH A 26 426 78 HOH HOH . D 4 HOH A 27 427 57 HOH HOH . D 4 HOH A 28 428 38 HOH HOH . D 4 HOH A 29 429 71 HOH HOH . D 4 HOH A 30 430 21 HOH HOH . D 4 HOH A 31 431 47 HOH HOH . D 4 HOH A 32 432 96 HOH HOH . D 4 HOH A 33 433 14 HOH HOH . D 4 HOH A 34 434 1 HOH HOH . D 4 HOH A 35 435 27 HOH HOH . D 4 HOH A 36 436 60 HOH HOH . D 4 HOH A 37 437 117 HOH HOH . D 4 HOH A 38 438 8 HOH HOH . D 4 HOH A 39 439 43 HOH HOH . D 4 HOH A 40 440 111 HOH HOH . D 4 HOH A 41 441 48 HOH HOH . D 4 HOH A 42 442 46 HOH HOH . D 4 HOH A 43 443 85 HOH HOH . D 4 HOH A 44 444 65 HOH HOH . D 4 HOH A 45 445 107 HOH HOH . D 4 HOH A 46 446 83 HOH HOH . D 4 HOH A 47 447 45 HOH HOH . D 4 HOH A 48 448 7 HOH HOH . D 4 HOH A 49 449 69 HOH HOH . D 4 HOH A 50 450 92 HOH HOH . D 4 HOH A 51 451 81 HOH HOH . D 4 HOH A 52 452 41 HOH HOH . D 4 HOH A 53 453 3 HOH HOH . D 4 HOH A 54 454 97 HOH HOH . D 4 HOH A 55 455 82 HOH HOH . D 4 HOH A 56 456 37 HOH HOH . D 4 HOH A 57 457 19 HOH HOH . D 4 HOH A 58 458 87 HOH HOH . D 4 HOH A 59 459 119 HOH HOH . D 4 HOH A 60 460 56 HOH HOH . D 4 HOH A 61 461 31 HOH HOH . D 4 HOH A 62 462 10 HOH HOH . D 4 HOH A 63 463 11 HOH HOH . D 4 HOH A 64 464 77 HOH HOH . D 4 HOH A 65 465 67 HOH HOH . D 4 HOH A 66 466 16 HOH HOH . D 4 HOH A 67 467 100 HOH HOH . D 4 HOH A 68 468 108 HOH HOH . D 4 HOH A 69 469 115 HOH HOH . D 4 HOH A 70 470 105 HOH HOH . D 4 HOH A 71 471 13 HOH HOH . D 4 HOH A 72 472 32 HOH HOH . D 4 HOH A 73 473 88 HOH HOH . D 4 HOH A 74 474 118 HOH HOH . D 4 HOH A 75 475 104 HOH HOH . D 4 HOH A 76 476 113 HOH HOH . D 4 HOH A 77 477 59 HOH HOH . D 4 HOH A 78 478 52 HOH HOH . D 4 HOH A 79 479 70 HOH HOH . D 4 HOH A 80 480 99 HOH HOH . D 4 HOH A 81 481 84 HOH HOH . D 4 HOH A 82 482 79 HOH HOH . D 4 HOH A 83 483 54 HOH HOH . D 4 HOH A 84 484 44 HOH HOH . D 4 HOH A 85 485 53 HOH HOH . D 4 HOH A 86 486 30 HOH HOH . D 4 HOH A 87 487 112 HOH HOH . D 4 HOH A 88 488 109 HOH HOH . D 4 HOH A 89 489 20 HOH HOH . D 4 HOH A 90 490 17 HOH HOH . D 4 HOH A 91 491 114 HOH HOH . D 4 HOH A 92 492 25 HOH HOH . D 4 HOH A 93 493 40 HOH HOH . D 4 HOH A 94 494 12 HOH HOH . D 4 HOH A 95 495 68 HOH HOH . D 4 HOH A 96 496 73 HOH HOH . D 4 HOH A 97 497 120 HOH HOH . D 4 HOH A 98 498 76 HOH HOH . D 4 HOH A 99 499 24 HOH HOH . D 4 HOH A 100 500 91 HOH HOH . D 4 HOH A 101 501 66 HOH HOH . D 4 HOH A 102 502 86 HOH HOH . D 4 HOH A 103 503 33 HOH HOH . D 4 HOH A 104 504 49 HOH HOH . D 4 HOH A 105 505 116 HOH HOH . D 4 HOH A 106 506 62 HOH HOH . D 4 HOH A 107 507 29 HOH HOH . D 4 HOH A 108 508 61 HOH HOH . D 4 HOH A 109 509 94 HOH HOH . D 4 HOH A 110 510 35 HOH HOH . D 4 HOH A 111 511 26 HOH HOH . D 4 HOH A 112 512 51 HOH HOH . D 4 HOH A 113 513 106 HOH HOH . D 4 HOH A 114 514 36 HOH HOH . D 4 HOH A 115 515 102 HOH HOH . D 4 HOH A 116 516 28 HOH HOH . D 4 HOH A 117 517 34 HOH HOH . D 4 HOH A 118 518 63 HOH HOH . D 4 HOH A 119 519 98 HOH HOH . D 4 HOH A 120 520 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . C 3 -36.918 -52.568 -3.434 0.5 46.13 ? S SO4 302 A 1 HETATM 2 O O1 SO4 . . . C 3 -36.262 -53.821 -3.872 0.5 42.92 ? O1 SO4 302 A 1 HETATM 3 O O2 SO4 . . . C 3 -37.827 -52.151 -4.518 0.5 49.38 ? O2 SO4 302 A 1 HETATM 4 O O3 SO4 . . . C 3 -37.666 -52.788 -2.191 0.5 47.92 ? O3 SO4 302 A 1 HETATM 5 O O4 SO4 . . . C 3 -35.898 -51.519 -3.166 0.5 40.28 ? O4 SO4 302 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #