data_5NIQ # _model_server_result.job_id '_EshcegyjtIdHCFesrO38w' _model_server_result.datetime_utc '2025-08-14 07:33:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5niq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 5NIQ # _exptl.entry_id 5NIQ _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 385.538 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-hexadecanoyl-L-glutamic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 1 A HIS 1 1_555 A N DSN 2 A DSN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale2 A C DSN 2 A DSN 2 1_555 A N GLN 3 A GLN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale3 A NZ LYS 14 A LYS 14 1_555 B C07 D6M . A D6M 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale4 A C SER 39 A SER 39 1_555 A N NH2 40 A NH2 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? # _chem_comp.formula 'C21 H39 N O5' _chem_comp.formula_weight 385.538 _chem_comp.id D6M _chem_comp.mon_nstd_flag . _chem_comp.name 'N-hexadecanoyl-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 D6M doub 70 n n C02 N03 D6M sing 71 n n C02 C12 D6M sing 72 n n N03 C04 D6M sing 73 n n C04 C05 D6M sing 74 n n C04 C09 D6M sing 75 n n C05 C06 D6M sing 76 n n C06 C07 D6M sing 77 n n C07 O08 D6M doub 78 n n C07 OXT D6M sing 79 n n C09 O10 D6M doub 80 n n C09 O11 D6M sing 81 n n C12 C13 D6M sing 82 n n C13 C14 D6M sing 83 n n C14 C15 D6M sing 84 n n C15 C16 D6M sing 85 n n C16 C17 D6M sing 86 n n C17 C18 D6M sing 87 n n C18 C19 D6M sing 88 n n C19 C20 D6M sing 89 n n C20 C21 D6M sing 90 n n C21 C22 D6M sing 91 n n C22 C23 D6M sing 92 n n C23 C24 D6M sing 93 n n C24 C25 D6M sing 94 n n C25 C26 D6M sing 95 n n N03 H03 D6M sing 96 n n C12 H121 D6M sing 97 n n C12 H122 D6M sing 98 n n C04 H04 D6M sing 99 n n C05 H051 D6M sing 100 n n C05 H052 D6M sing 101 n n C06 H061 D6M sing 102 n n C06 H062 D6M sing 103 n n OXT HX0 D6M sing 104 n n O11 H11 D6M sing 105 n n C13 H131 D6M sing 106 n n C13 H132 D6M sing 107 n n C14 H141 D6M sing 108 n n C14 H142 D6M sing 109 n n C15 H151 D6M sing 110 n n C15 H152 D6M sing 111 n n C16 H161 D6M sing 112 n n C16 H162 D6M sing 113 n n C17 H171 D6M sing 114 n n C17 H172 D6M sing 115 n n C18 H181 D6M sing 116 n n C18 H182 D6M sing 117 n n C19 H191 D6M sing 118 n n C19 H192 D6M sing 119 n n C20 H201 D6M sing 120 n n C20 H202 D6M sing 121 n n C21 H211 D6M sing 122 n n C21 H212 D6M sing 123 n n C22 H221 D6M sing 124 n n C22 H222 D6M sing 125 n n C23 H231 D6M sing 126 n n C23 H232 D6M sing 127 n n C24 H241 D6M sing 128 n n C24 H242 D6M sing 129 n n C25 H251 D6M sing 130 n n C25 H252 D6M sing 131 n n C26 H261 D6M sing 132 n n C26 H262 D6M sing 133 n n C26 H263 D6M sing 134 n n # _atom_sites.entry_id 5NIQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id D6M _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 14 _pdbx_nonpoly_scheme.pdb_mon_id D6M _pdbx_nonpoly_scheme.auth_mon_id LYS _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 D6M . . . B 2 -29.388 31.143 16.532 1 -0.28 ? O01 D6M 101 A 1 HETATM 2 C C02 D6M . . . B 2 -28.275 31.636 16.433 1 0.21 ? C02 D6M 101 A 1 HETATM 3 N N03 D6M . . . B 2 -27.143 30.895 16.397 1 -0.31 ? N03 D6M 101 A 1 HETATM 4 C C04 D6M . . . B 2 -27.187 29.432 16.426 1 0.06 ? C04 D6M 101 A 1 HETATM 5 C C05 D6M . . . B 2 -26.722 28.904 15.042 1 -0.02 ? C05 D6M 101 A 1 HETATM 6 C C06 D6M . . . B 2 -26.856 27.363 14.889 1 0.03 ? C06 D6M 101 A 1 HETATM 7 C C07 D6M . . . B 2 -28.273 26.849 14.75 1 0.21 ? C07 D6M 101 A 1 HETATM 8 O O08 D6M . . . B 2 -29.216 27.609 14.895 1 -0.28 ? O08 D6M 101 A 1 HETATM 9 C C09 D6M . . . B 2 -26.31 28.944 17.559 1 0.06 ? C09 D6M 101 A 1 HETATM 10 O O10 D6M . . . B 2 -26.855 28.424 18.58 1 -0.55 ? O10 D6M 101 A 1 HETATM 11 O O11 D6M . . . B 2 -25.054 29.046 17.464 1 -0.55 ? O11 D6M 101 A 1 HETATM 12 C C12 D6M . . . B 2 -28.17 33.139 16.343 1 0.02 ? C12 D6M 101 A 1 HETATM 13 C C13 D6M . . . B 2 -28.228 33.634 14.872 1 -0.04 ? C13 D6M 101 A 1 HETATM 14 C C14 D6M . . . B 2 -27 33.188 14.03 1 -0.05 ? C14 D6M 101 A 1 HETATM 15 C C15 D6M . . . B 2 -27.085 33.747 12.582 1 -0.05 ? C15 D6M 101 A 1 HETATM 16 C C16 D6M . . . B 2 -25.829 33.383 11.742 1 -0.05 ? C16 D6M 101 A 1 HETATM 17 C C17 D6M . . . B 2 -25.958 33.912 10.286 1 -0.05 ? C17 D6M 101 A 1 HETATM 18 C C18 D6M . . . B 2 -24.684 33.624 9.445 1 -0.05 ? C18 D6M 101 A 1 HETATM 19 C C19 D6M . . . B 2 -24.86 34.117 7.98 1 -0.05 ? C19 D6M 101 A 1 HETATM 20 C C20 D6M . . . B 2 -23.65 33.795 7.056 1 -0.05 ? C20 D6M 101 A 1 HETATM 21 C C21 D6M . . . B 2 -22.369 34.608 7.4 1 -0.05 ? C21 D6M 101 A 1 HETATM 22 C C22 D6M . . . B 2 -21.239 34.343 6.365 1 -0.05 ? C22 D6M 101 A 1 HETATM 23 C C23 D6M . . . B 2 -19.998 35.266 6.547 1 -0.05 ? C23 D6M 101 A 1 HETATM 24 C C24 D6M . . . B 2 -19.264 35.062 7.901 1 -0.05 ? C24 D6M 101 A 1 HETATM 25 C C25 D6M . . . B 2 -17.955 35.898 7.96 1 -0.06 ? C25 D6M 101 A 1 HETATM 26 C C26 D6M . . . B 2 -17.224 35.708 9.316 1 -0.07 ? C26 D6M 101 A 1 HETATM 27 H H03 D6M . . . B 2 -26.235 31.316 16.344 1 0.15 ? H03 D6M 101 A 1 HETATM 28 H H121 D6M . . . B 2 -27.242 33.489 16.823 1 0.04 ? H121 D6M 101 A 1 HETATM 29 H H122 D6M . . . B 2 -29.015 33.574 16.902 1 0.04 ? H122 D6M 101 A 1 HETATM 30 H H04 D6M . . . B 2 -28.205 29.053 16.599 1 0.06 ? H04 D6M 101 A 1 HETATM 31 H H051 D6M . . . B 2 -25.668 29.196 14.903 1 0.03 ? H051 D6M 101 A 1 HETATM 32 H H052 D6M . . . B 2 -27.314 29.394 14.251 1 0.03 ? H052 D6M 101 A 1 HETATM 33 H H061 D6M . . . B 2 -26.372 26.869 15.742 1 0.04 ? H061 D6M 101 A 1 HETATM 34 H H062 D6M . . . B 2 -26.321 27.064 13.973 1 0.04 ? H062 D6M 101 A 1 HETATM 35 H H131 D6M . . . B 2 -28.273 34.736 14.877 1 0.03 ? H131 D6M 101 A 1 HETATM 36 H H132 D6M . . . B 2 -29.154 33.257 14.406 1 0.03 ? H132 D6M 101 A 1 HETATM 37 H H141 D6M . . . B 2 -26.956 32.088 13.984 1 0.03 ? H141 D6M 101 A 1 HETATM 38 H H142 D6M . . . B 2 -26.077 33.553 14.51 1 0.03 ? H142 D6M 101 A 1 HETATM 39 H H151 D6M . . . B 2 -27.182 34.844 12.62 1 0.03 ? H151 D6M 101 A 1 HETATM 40 H H152 D6M . . . B 2 -27.984 33.338 12.091 1 0.03 ? H152 D6M 101 A 1 HETATM 41 H H161 D6M . . . B 2 -25.704 32.287 11.721 1 0.03 ? H161 D6M 101 A 1 HETATM 42 H H162 D6M . . . B 2 -24.937 33.823 12.216 1 0.03 ? H162 D6M 101 A 1 HETATM 43 H H171 D6M . . . B 2 -26.133 35.001 10.308 1 0.03 ? H171 D6M 101 A 1 HETATM 44 H H172 D6M . . . B 2 -26.829 33.435 9.807 1 0.03 ? H172 D6M 101 A 1 HETATM 45 H H181 D6M . . . B 2 -24.484 32.54 9.443 1 0.03 ? H181 D6M 101 A 1 HETATM 46 H H182 D6M . . . B 2 -23.832 34.134 9.92 1 0.03 ? H182 D6M 101 A 1 HETATM 47 H H191 D6M . . . B 2 -25.045 35.204 7.973 1 0.03 ? H191 D6M 101 A 1 HETATM 48 H H192 D6M . . . B 2 -25.751 33.621 7.559 1 0.03 ? H192 D6M 101 A 1 HETATM 49 H H201 D6M . . . B 2 -23.947 34.039 6.022 1 0.03 ? H201 D6M 101 A 1 HETATM 50 H H202 D6M . . . B 2 -23.428 32.715 7.098 1 0.03 ? H202 D6M 101 A 1 HETATM 51 H H211 D6M . . . B 2 -22.018 34.322 8.402 1 0.03 ? H211 D6M 101 A 1 HETATM 52 H H212 D6M . . . B 2 -22.611 35.683 7.404 1 0.03 ? H212 D6M 101 A 1 HETATM 53 H H221 D6M . . . B 2 -21.636 34.518 5.351 1 0.03 ? H221 D6M 101 A 1 HETATM 54 H H222 D6M . . . B 2 -20.927 33.286 6.427 1 0.03 ? H222 D6M 101 A 1 HETATM 55 H H231 D6M . . . B 2 -20.309 36.319 6.453 1 0.03 ? H231 D6M 101 A 1 HETATM 56 H H232 D6M . . . B 2 -19.291 35.048 5.729 1 0.03 ? H232 D6M 101 A 1 HETATM 57 H H241 D6M . . . B 2 -19.021 33.995 8.029 1 0.03 ? H241 D6M 101 A 1 HETATM 58 H H242 D6M . . . B 2 -19.913 35.376 8.734 1 0.03 ? H242 D6M 101 A 1 HETATM 59 H H251 D6M . . . B 2 -18.193 36.966 7.824 1 0.03 ? H251 D6M 101 A 1 HETATM 60 H H252 D6M . . . B 2 -17.28 35.589 7.145 1 0.03 ? H252 D6M 101 A 1 HETATM 61 H H261 D6M . . . B 2 -16.299 36.307 9.333 1 0.02 ? H261 D6M 101 A 1 HETATM 62 H H262 D6M . . . B 2 -17.867 36.033 10.148 1 0.02 ? H262 D6M 101 A 1 HETATM 63 H H263 D6M . . . B 2 -16.959 34.65 9.465 1 0.02 ? H263 D6M 101 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 2919 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 63 #