data_5NIR # _model_server_result.job_id o9gTR7MXCvhlKPrCxg2ZuA _model_server_result.datetime_utc '2025-02-05 09:58:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nir # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":101}' # _entry.id 5NIR # _exptl.entry_id 5NIR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 326.383 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NIR _cell.length_a 31.93 _cell.length_b 60.16 _cell.length_c 86.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NIR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,Y 1 1 B,O,P,Q,R,S,T,U,V,W,X,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 34 1_555 A SG CYS 33 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf2 A SG CYS 28 A CYS 52 1_555 A SG CYS 61 A CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 31 A CYS 55 1_555 A SG CYS 40 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 45 A CYS 69 1_555 A SG CYS 62 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 51 A CYS 75 1_555 A SG CYS 65 A CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 B SG CYS 10 B CYS 34 1_555 B SG CYS 33 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf7 B SG CYS 28 B CYS 52 1_555 B SG CYS 61 B CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 B SG CYS 31 B CYS 55 1_555 B SG CYS 40 B CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf9 B SG CYS 45 B CYS 69 1_555 B SG CYS 62 B CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf10 B SG CYS 51 B CYS 75 1_555 B SG CYS 65 B CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? # _chem_comp.formula 'C14 H30 O8' _chem_comp.formula_weight 326.383 _chem_comp.id P33 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HEPTAETHYLENE GLYCOL;PEG330' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C21 P33 sing 225 n n O22 H22 P33 sing 226 n n C21 C20 P33 sing 227 n n C21 H211 P33 sing 228 n n C21 H212 P33 sing 229 n n C20 O19 P33 sing 230 n n C20 H201 P33 sing 231 n n C20 H202 P33 sing 232 n n O19 C18 P33 sing 233 n n C18 C17 P33 sing 234 n n C18 H181 P33 sing 235 n n C18 H182 P33 sing 236 n n C17 O16 P33 sing 237 n n C17 H171 P33 sing 238 n n C17 H172 P33 sing 239 n n O16 C15 P33 sing 240 n n C15 C14 P33 sing 241 n n C15 H151 P33 sing 242 n n C15 H152 P33 sing 243 n n C14 O13 P33 sing 244 n n C14 H141 P33 sing 245 n n C14 H142 P33 sing 246 n n O13 C12 P33 sing 247 n n C12 C11 P33 sing 248 n n C12 H121 P33 sing 249 n n C12 H122 P33 sing 250 n n C11 O10 P33 sing 251 n n C11 H111 P33 sing 252 n n C11 H112 P33 sing 253 n n O10 C9 P33 sing 254 n n C9 C8 P33 sing 255 n n C9 H91 P33 sing 256 n n C9 H92 P33 sing 257 n n C8 O7 P33 sing 258 n n C8 H81 P33 sing 259 n n C8 H82 P33 sing 260 n n O7 C6 P33 sing 261 n n C6 C5 P33 sing 262 n n C6 H61 P33 sing 263 n n C6 H62 P33 sing 264 n n C5 O4 P33 sing 265 n n C5 H51 P33 sing 266 n n C5 H52 P33 sing 267 n n O4 C3 P33 sing 268 n n C3 C2 P33 sing 269 n n C3 H31 P33 sing 270 n n C3 H32 P33 sing 271 n n C2 O1 P33 sing 272 n n C2 H21 P33 sing 273 n n C2 H22A P33 sing 274 n n O1 HO1 P33 sing 275 n n # _atom_sites.entry_id 5NIR _atom_sites.fract_transf_matrix[1][1] 0.031319 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016622 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011571 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 101 11 EDO EDO . D 2 EDO A 1 102 12 EDO EDO . E 2 EDO A 1 103 13 EDO EDO . F 2 EDO A 1 104 14 EDO EDO . G 2 EDO A 1 105 15 EDO EDO . H 2 EDO A 1 106 16 EDO EDO . I 2 EDO A 1 107 17 EDO EDO . J 3 PEG A 1 108 3 PEG PEG . K 3 PEG A 1 109 8 PEG PEG . L 4 PG4 A 1 110 1 PG4 1PE . M 4 PG4 A 1 111 2 PG4 PG4 . N 4 PG4 A 1 112 3 PG4 PG4 . O 5 P33 B 1 101 1 P33 2PE . P 2 EDO B 1 102 3 EDO EDO . Q 3 PEG B 1 103 2 PEG PEG . R 3 PEG B 1 104 5 PEG PEG . S 3 PEG B 1 105 9 PEG PEG . T 3 PEG B 1 106 10 PEG PEG . U 3 PEG B 1 107 11 PEG PEG . V 4 PG4 B 1 108 4 PG4 PG4 . W 4 PG4 B 1 109 5 PG4 PG4 . X 4 PG4 B 1 110 6 PG4 PG4 . Y 6 HOH A 1 201 13 HOH HOH . Y 6 HOH A 2 202 8 HOH HOH . Y 6 HOH A 3 203 2 HOH HOH . Y 6 HOH A 4 204 21 HOH HOH . Y 6 HOH A 5 205 4 HOH HOH . Y 6 HOH A 6 206 3 HOH HOH . Y 6 HOH A 7 207 17 HOH HOH . Z 6 HOH B 1 201 25 HOH HOH . Z 6 HOH B 2 202 23 HOH HOH . Z 6 HOH B 3 203 10 HOH HOH . Z 6 HOH B 4 204 12 HOH HOH . Z 6 HOH B 5 205 5 HOH HOH . Z 6 HOH B 6 206 7 HOH HOH . Z 6 HOH B 7 207 24 HOH HOH . Z 6 HOH B 8 208 18 HOH HOH . Z 6 HOH B 9 209 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 P33 . . . O 5 1.286 8.128 39.503 1 63.58 ? O22 P33 101 B 1 HETATM 2 C C21 P33 . . . O 5 0.75 8.901 40.58 1 63.25 ? C21 P33 101 B 1 HETATM 3 C C20 P33 . . . O 5 0.053 10.135 40.038 1 62.96 ? C20 P33 101 B 1 HETATM 4 O O19 P33 . . . O 5 -0.173 11.029 41.125 1 63.62 ? O19 P33 101 B 1 HETATM 5 C C18 P33 . . . O 5 -0.902 12.17 40.705 1 62.22 ? C18 P33 101 B 1 HETATM 6 C C17 P33 . . . O 5 -2.1 12.499 41.59 1 63.4 ? C17 P33 101 B 1 HETATM 7 O O16 P33 . . . O 5 -2.511 13.867 41.421 1 64.76 ? O16 P33 101 B 1 HETATM 8 C C15 P33 . . . O 5 -2.966 14.095 40.086 1 60.34 ? C15 P33 101 B 1 HETATM 9 C C14 P33 . . . O 5 -3.097 15.574 39.856 1 56.26 ? C14 P33 101 B 1 HETATM 10 O O13 P33 . . . O 5 -2.162 16.156 38.939 1 47.68 ? O13 P33 101 B 1 HETATM 11 C C12 P33 . . . O 5 -2.767 16.591 37.719 1 53.03 ? C12 P33 101 B 1 HETATM 12 C C11 P33 . . . O 5 -3.342 17.992 37.833 1 55.85 ? C11 P33 101 B 1 HETATM 13 O O10 P33 . . . O 5 -4.466 18.007 38.713 1 59.86 ? O10 P33 101 B 1 HETATM 14 C C9 P33 . . . O 5 -4.139 18.598 39.975 1 61.53 ? C9 P33 101 B 1 HETATM 15 C C8 P33 . . . O 5 -5.366 18.626 40.882 1 63.02 ? C8 P33 101 B 1 HETATM 16 O O7 P33 . . . O 5 -5.091 18.36 42.256 1 64.69 ? O7 P33 101 B 1 HETATM 17 C C6 P33 . . . O 5 -4.262 17.22 42.45 1 64.34 ? C6 P33 101 B 1 HETATM 18 C C5 P33 . . . O 5 -3.51 17.353 43.746 1 63.46 ? C5 P33 101 B 1 HETATM 19 O O4 P33 . . . O 5 -2.882 16.096 44.007 1 67.83 ? O4 P33 101 B 1 HETATM 20 C C3 P33 . . . O 5 -2.868 15.778 45.399 1 68.59 ? C3 P33 101 B 1 HETATM 21 C C2 P33 . . . O 5 -2.182 16.893 46.179 1 70.53 ? C2 P33 101 B 1 HETATM 22 O O1 P33 . . . O 5 -0.902 17.15 45.6 1 69.85 ? O1 P33 101 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #