data_5NIR # _model_server_result.job_id aDbEBdxHc6IdnuyQMUjdkA _model_server_result.datetime_utc '2025-02-05 10:00:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nir # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":107}' # _entry.id 5NIR # _exptl.entry_id 5NIR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NIR _cell.length_a 31.93 _cell.length_b 60.16 _cell.length_c 86.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NIR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,Y 1 1 B,O,P,Q,R,S,T,U,V,W,X,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 K N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 34 1_555 A SG CYS 33 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf2 A SG CYS 28 A CYS 52 1_555 A SG CYS 61 A CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 31 A CYS 55 1_555 A SG CYS 40 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 45 A CYS 69 1_555 A SG CYS 62 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 51 A CYS 75 1_555 A SG CYS 65 A CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 B SG CYS 10 B CYS 34 1_555 B SG CYS 33 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf7 B SG CYS 28 B CYS 52 1_555 B SG CYS 61 B CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 B SG CYS 31 B CYS 55 1_555 B SG CYS 40 B CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf9 B SG CYS 45 B CYS 69 1_555 B SG CYS 62 B CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf10 B SG CYS 51 B CYS 75 1_555 B SG CYS 65 B CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 276 n n C1 C2 PEG sing 277 n n C1 H11 PEG sing 278 n n C1 H12 PEG sing 279 n n O1 HO1 PEG sing 280 n n C2 O2 PEG sing 281 n n C2 H21 PEG sing 282 n n C2 H22 PEG sing 283 n n O2 C3 PEG sing 284 n n C3 C4 PEG sing 285 n n C3 H31 PEG sing 286 n n C3 H32 PEG sing 287 n n C4 O4 PEG sing 288 n n C4 H41 PEG sing 289 n n C4 H42 PEG sing 290 n n O4 HO4 PEG sing 291 n n # _atom_sites.entry_id 5NIR _atom_sites.fract_transf_matrix[1][1] 0.031319 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016622 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011571 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 101 11 EDO EDO . D 2 EDO A 1 102 12 EDO EDO . E 2 EDO A 1 103 13 EDO EDO . F 2 EDO A 1 104 14 EDO EDO . G 2 EDO A 1 105 15 EDO EDO . H 2 EDO A 1 106 16 EDO EDO . I 2 EDO A 1 107 17 EDO EDO . J 3 PEG A 1 108 3 PEG PEG . K 3 PEG A 1 109 8 PEG PEG . L 4 PG4 A 1 110 1 PG4 1PE . M 4 PG4 A 1 111 2 PG4 PG4 . N 4 PG4 A 1 112 3 PG4 PG4 . O 5 P33 B 1 101 1 P33 2PE . P 2 EDO B 1 102 3 EDO EDO . Q 3 PEG B 1 103 2 PEG PEG . R 3 PEG B 1 104 5 PEG PEG . S 3 PEG B 1 105 9 PEG PEG . T 3 PEG B 1 106 10 PEG PEG . U 3 PEG B 1 107 11 PEG PEG . V 4 PG4 B 1 108 4 PG4 PG4 . W 4 PG4 B 1 109 5 PG4 PG4 . X 4 PG4 B 1 110 6 PG4 PG4 . Y 6 HOH A 1 201 13 HOH HOH . Y 6 HOH A 2 202 8 HOH HOH . Y 6 HOH A 3 203 2 HOH HOH . Y 6 HOH A 4 204 21 HOH HOH . Y 6 HOH A 5 205 4 HOH HOH . Y 6 HOH A 6 206 3 HOH HOH . Y 6 HOH A 7 207 17 HOH HOH . Z 6 HOH B 1 201 25 HOH HOH . Z 6 HOH B 2 202 23 HOH HOH . Z 6 HOH B 3 203 10 HOH HOH . Z 6 HOH B 4 204 12 HOH HOH . Z 6 HOH B 5 205 5 HOH HOH . Z 6 HOH B 6 206 7 HOH HOH . Z 6 HOH B 7 207 24 HOH HOH . Z 6 HOH B 8 208 18 HOH HOH . Z 6 HOH B 9 209 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . U 3 -6.131 26.629 23.835 1 69.65 ? C1 PEG 107 B 1 HETATM 2 O O1 PEG . . . U 3 -6.162 27.833 23.058 1 71.55 ? O1 PEG 107 B 1 HETATM 3 C C2 PEG . . . U 3 -5.368 25.563 23.056 1 66.58 ? C2 PEG 107 B 1 HETATM 4 O O2 PEG . . . U 3 -5.976 24.285 23.261 1 63.37 ? O2 PEG 107 B 1 HETATM 5 C C3 PEG . . . U 3 -5.044 23.235 23.546 1 57.29 ? C3 PEG 107 B 1 HETATM 6 C C4 PEG . . . U 3 -4.536 23.434 24.97 1 50.45 ? C4 PEG 107 B 1 HETATM 7 O O4 PEG . . . U 3 -4.401 22.233 25.712 1 43.94 ? O4 PEG 107 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #