data_5NIR # _model_server_result.job_id xmjQAlp8ncEAerQE7hSQLQ _model_server_result.datetime_utc '2025-02-05 09:49:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nir # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":110}' # _entry.id 5NIR # _exptl.entry_id 5NIR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NIR _cell.length_a 31.93 _cell.length_b 60.16 _cell.length_c 86.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NIR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,Y 1 1 B,O,P,Q,R,S,T,U,V,W,X,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 L N N ? 4 M N N ? 4 N N N ? 4 V N N ? 4 W N N ? 4 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 34 1_555 A SG CYS 33 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf2 A SG CYS 28 A CYS 52 1_555 A SG CYS 61 A CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 31 A CYS 55 1_555 A SG CYS 40 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 45 A CYS 69 1_555 A SG CYS 62 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 51 A CYS 75 1_555 A SG CYS 65 A CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 B SG CYS 10 B CYS 34 1_555 B SG CYS 33 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf7 B SG CYS 28 B CYS 52 1_555 B SG CYS 61 B CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 B SG CYS 31 B CYS 55 1_555 B SG CYS 40 B CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf9 B SG CYS 45 B CYS 69 1_555 B SG CYS 62 B CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf10 B SG CYS 51 B CYS 75 1_555 B SG CYS 65 B CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 292 n n O1 HO1 PG4 sing 293 n n C1 C2 PG4 sing 294 n n C1 H11 PG4 sing 295 n n C1 H12 PG4 sing 296 n n C2 O2 PG4 sing 297 n n C2 H21 PG4 sing 298 n n C2 H22 PG4 sing 299 n n O2 C3 PG4 sing 300 n n C3 C4 PG4 sing 301 n n C3 H31 PG4 sing 302 n n C3 H32 PG4 sing 303 n n C4 O3 PG4 sing 304 n n C4 H41 PG4 sing 305 n n C4 H42 PG4 sing 306 n n O3 C5 PG4 sing 307 n n C5 C6 PG4 sing 308 n n C5 H51 PG4 sing 309 n n C5 H52 PG4 sing 310 n n C6 O4 PG4 sing 311 n n C6 H61 PG4 sing 312 n n C6 H62 PG4 sing 313 n n O4 C7 PG4 sing 314 n n C7 C8 PG4 sing 315 n n C7 H71 PG4 sing 316 n n C7 H72 PG4 sing 317 n n C8 O5 PG4 sing 318 n n C8 H81 PG4 sing 319 n n C8 H82 PG4 sing 320 n n O5 HO5 PG4 sing 321 n n # _atom_sites.entry_id 5NIR _atom_sites.fract_transf_matrix[1][1] 0.031319 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016622 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011571 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 101 11 EDO EDO . D 2 EDO A 1 102 12 EDO EDO . E 2 EDO A 1 103 13 EDO EDO . F 2 EDO A 1 104 14 EDO EDO . G 2 EDO A 1 105 15 EDO EDO . H 2 EDO A 1 106 16 EDO EDO . I 2 EDO A 1 107 17 EDO EDO . J 3 PEG A 1 108 3 PEG PEG . K 3 PEG A 1 109 8 PEG PEG . L 4 PG4 A 1 110 1 PG4 1PE . M 4 PG4 A 1 111 2 PG4 PG4 . N 4 PG4 A 1 112 3 PG4 PG4 . O 5 P33 B 1 101 1 P33 2PE . P 2 EDO B 1 102 3 EDO EDO . Q 3 PEG B 1 103 2 PEG PEG . R 3 PEG B 1 104 5 PEG PEG . S 3 PEG B 1 105 9 PEG PEG . T 3 PEG B 1 106 10 PEG PEG . U 3 PEG B 1 107 11 PEG PEG . V 4 PG4 B 1 108 4 PG4 PG4 . W 4 PG4 B 1 109 5 PG4 PG4 . X 4 PG4 B 1 110 6 PG4 PG4 . Y 6 HOH A 1 201 13 HOH HOH . Y 6 HOH A 2 202 8 HOH HOH . Y 6 HOH A 3 203 2 HOH HOH . Y 6 HOH A 4 204 21 HOH HOH . Y 6 HOH A 5 205 4 HOH HOH . Y 6 HOH A 6 206 3 HOH HOH . Y 6 HOH A 7 207 17 HOH HOH . Z 6 HOH B 1 201 25 HOH HOH . Z 6 HOH B 2 202 23 HOH HOH . Z 6 HOH B 3 203 10 HOH HOH . Z 6 HOH B 4 204 12 HOH HOH . Z 6 HOH B 5 205 5 HOH HOH . Z 6 HOH B 6 206 7 HOH HOH . Z 6 HOH B 7 207 24 HOH HOH . Z 6 HOH B 8 208 18 HOH HOH . Z 6 HOH B 9 209 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . X 4 8.256 18.278 10.99 1 81.82 ? O1 PG4 110 B 1 HETATM 2 C C1 PG4 . . . X 4 9.28 18.249 11.992 1 81.91 ? C1 PG4 110 B 1 HETATM 3 C C2 PG4 . . . X 4 8.726 17.64 13.276 1 81.3 ? C2 PG4 110 B 1 HETATM 4 O O2 PG4 . . . X 4 7.648 18.445 13.757 1 80.25 ? O2 PG4 110 B 1 HETATM 5 C C3 PG4 . . . X 4 6.484 17.679 14.08 1 77.17 ? C3 PG4 110 B 1 HETATM 6 C C4 PG4 . . . X 4 5.246 18.54 13.838 1 73.8 ? C4 PG4 110 B 1 HETATM 7 O O3 PG4 . . . X 4 4.201 18.228 14.766 1 70.09 ? O3 PG4 110 B 1 HETATM 8 C C5 PG4 . . . X 4 4.032 19.22 15.789 1 64.36 ? C5 PG4 110 B 1 HETATM 9 C C6 PG4 . . . X 4 2.734 20.015 15.605 1 59.46 ? C6 PG4 110 B 1 HETATM 10 O O4 PG4 . . . X 4 2.733 21.25 16.353 1 52.96 ? O4 PG4 110 B 1 HETATM 11 C C7 PG4 . . . X 4 3.431 22.318 15.711 1 48.77 ? C7 PG4 110 B 1 HETATM 12 C C8 PG4 . . . X 4 2.529 23.366 15.051 1 48.29 ? C8 PG4 110 B 1 HETATM 13 O O5 PG4 . . . X 4 3.279 24.588 14.906 1 43.89 ? O5 PG4 110 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #