data_5NIZ # _model_server_result.job_id cAThpjEmJiePr6p-5ESmtw _model_server_result.datetime_utc '2025-01-10 19:54:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5niz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5NIZ # _exptl.entry_id 5NIZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 304.384 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[3-[5-[(1~{R},2~{R})-2-methylcyclopropyl]furan-2-yl]propanoyl]piperidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NIZ _cell.length_a 120.477 _cell.length_b 120.477 _cell.length_c 33.65 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NIZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H24 N2 O3' _chem_comp.formula_weight 304.384 _chem_comp.id 8YT _chem_comp.mon_nstd_flag . _chem_comp.name 1-[3-[5-[(1~{R},2~{R})-2-methylcyclopropyl]furan-2-yl]propanoyl]piperidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAB 8YT sing 1 n n CAB CAD 8YT sing 2 n n CAB CAC 8YT sing 3 n n OAI CAE 8YT sing 4 n y OAI CAH 8YT sing 5 n y CAD CAE 8YT sing 6 n n CAD CAC 8YT sing 7 n n CAJ CAH 8YT sing 8 n n CAJ CAK 8YT sing 9 n n CAE CAF 8YT doub 10 n y CAH CAG 8YT doub 11 n y CAK CAL 8YT sing 12 n n CAO CAP 8YT sing 13 n n CAO NAN 8YT sing 14 n n CAF CAG 8YT sing 15 n y CAP CAQ 8YT sing 16 n n CAL NAN 8YT sing 17 n n CAL OAM 8YT doub 18 n n NAN CAS 8YT sing 19 n n CAQ CAT 8YT sing 20 n n CAQ CAR 8YT sing 21 n n OAU CAT 8YT doub 22 n n CAT NAV 8YT sing 23 n n CAS CAR 8YT sing 24 n n CAO H1 8YT sing 25 n n CAO H2 8YT sing 26 n n CAP H3 8YT sing 27 n n CAP H4 8YT sing 28 n n CAQ H5 8YT sing 29 n n NAV H6 8YT sing 30 n n NAV H7 8YT sing 31 n n CAR H8 8YT sing 32 n n CAR H9 8YT sing 33 n n CAS H10 8YT sing 34 n n CAS H11 8YT sing 35 n n CAK H12 8YT sing 36 n n CAK H13 8YT sing 37 n n CAJ H14 8YT sing 38 n n CAJ H15 8YT sing 39 n n CAG H16 8YT sing 40 n n CAF H17 8YT sing 41 n n CAD H18 8YT sing 42 n n CAC H19 8YT sing 43 n n CAC H20 8YT sing 44 n n CAB H21 8YT sing 45 n n CAA H22 8YT sing 46 n n CAA H23 8YT sing 47 n n CAA H24 8YT sing 48 n n # _atom_sites.entry_id 5NIZ _atom_sites.fract_transf_matrix[1][1] 0.0083 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0083 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029718 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8YT A 1 301 1 8YT LIG . C 3 SO4 A 1 302 1 SO4 SO4 . D 3 SO4 A 1 303 2 SO4 SO4 . E 4 HOH A 1 401 25 HOH HOH . E 4 HOH A 2 402 54 HOH HOH . E 4 HOH A 3 403 74 HOH HOH . E 4 HOH A 4 404 35 HOH HOH . E 4 HOH A 5 405 75 HOH HOH . E 4 HOH A 6 406 55 HOH HOH . E 4 HOH A 7 407 63 HOH HOH . E 4 HOH A 8 408 6 HOH HOH . E 4 HOH A 9 409 53 HOH HOH . E 4 HOH A 10 410 37 HOH HOH . E 4 HOH A 11 411 19 HOH HOH . E 4 HOH A 12 412 18 HOH HOH . E 4 HOH A 13 413 12 HOH HOH . E 4 HOH A 14 414 22 HOH HOH . E 4 HOH A 15 415 16 HOH HOH . E 4 HOH A 16 416 36 HOH HOH . E 4 HOH A 17 417 72 HOH HOH . E 4 HOH A 18 418 40 HOH HOH . E 4 HOH A 19 419 29 HOH HOH . E 4 HOH A 20 420 3 HOH HOH . E 4 HOH A 21 421 14 HOH HOH . E 4 HOH A 22 422 39 HOH HOH . E 4 HOH A 23 423 42 HOH HOH . E 4 HOH A 24 424 8 HOH HOH . E 4 HOH A 25 425 56 HOH HOH . E 4 HOH A 26 426 27 HOH HOH . E 4 HOH A 27 427 26 HOH HOH . E 4 HOH A 28 428 51 HOH HOH . E 4 HOH A 29 429 32 HOH HOH . E 4 HOH A 30 430 11 HOH HOH . E 4 HOH A 31 431 2 HOH HOH . E 4 HOH A 32 432 58 HOH HOH . E 4 HOH A 33 433 23 HOH HOH . E 4 HOH A 34 434 1 HOH HOH . E 4 HOH A 35 435 70 HOH HOH . E 4 HOH A 36 436 45 HOH HOH . E 4 HOH A 37 437 28 HOH HOH . E 4 HOH A 38 438 31 HOH HOH . E 4 HOH A 39 439 4 HOH HOH . E 4 HOH A 40 440 59 HOH HOH . E 4 HOH A 41 441 21 HOH HOH . E 4 HOH A 42 442 57 HOH HOH . E 4 HOH A 43 443 34 HOH HOH . E 4 HOH A 44 444 20 HOH HOH . E 4 HOH A 45 445 10 HOH HOH . E 4 HOH A 46 446 24 HOH HOH . E 4 HOH A 47 447 30 HOH HOH . E 4 HOH A 48 448 67 HOH HOH . E 4 HOH A 49 449 71 HOH HOH . E 4 HOH A 50 450 9 HOH HOH . E 4 HOH A 51 451 17 HOH HOH . E 4 HOH A 52 452 44 HOH HOH . E 4 HOH A 53 453 66 HOH HOH . E 4 HOH A 54 454 7 HOH HOH . E 4 HOH A 55 455 68 HOH HOH . E 4 HOH A 56 456 38 HOH HOH . E 4 HOH A 57 457 61 HOH HOH . E 4 HOH A 58 458 5 HOH HOH . E 4 HOH A 59 459 69 HOH HOH . E 4 HOH A 60 460 64 HOH HOH . E 4 HOH A 61 461 15 HOH HOH . E 4 HOH A 62 462 50 HOH HOH . E 4 HOH A 63 463 49 HOH HOH . E 4 HOH A 64 464 46 HOH HOH . E 4 HOH A 65 465 33 HOH HOH . E 4 HOH A 66 466 65 HOH HOH . E 4 HOH A 67 467 52 HOH HOH . E 4 HOH A 68 468 13 HOH HOH . E 4 HOH A 69 469 48 HOH HOH . E 4 HOH A 70 470 62 HOH HOH . E 4 HOH A 71 471 47 HOH HOH . E 4 HOH A 72 472 73 HOH HOH . E 4 HOH A 73 473 43 HOH HOH . E 4 HOH A 74 474 41 HOH HOH . E 4 HOH A 75 475 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAO 8YT . . . B 2 -9.194 -26.249 2.366 1 44.36 ? CAO 8YT 301 A 1 HETATM 2 C CAP 8YT . . . B 2 -7.74 -26.499 2.432 1 45.73 ? CAP 8YT 301 A 1 HETATM 3 C CAQ 8YT . . . B 2 -7.192 -26.058 3.763 1 47.94 ? CAQ 8YT 301 A 1 HETATM 4 C CAT 8YT . . . B 2 -5.683 -26.463 3.945 1 53.01 ? CAT 8YT 301 A 1 HETATM 5 O OAU 8YT . . . B 2 -5.267 -27.612 3.769 1 61.14 ? OAU 8YT 301 A 1 HETATM 6 N NAV 8YT . . . B 2 -4.864 -25.493 4.31 1 53.05 ? NAV 8YT 301 A 1 HETATM 7 C CAR 8YT . . . B 2 -8.107 -26.556 4.87 1 44.27 ? CAR 8YT 301 A 1 HETATM 8 C CAS 8YT . . . B 2 -9.104 -27.583 4.412 1 44.4 ? CAS 8YT 301 A 1 HETATM 9 N NAN 8YT . . . B 2 -9.91 -27.071 3.286 1 51.18 ? NAN 8YT 301 A 1 HETATM 10 C CAL 8YT . . . B 2 -11.188 -27.548 3.041 1 58.87 ? CAL 8YT 301 A 1 HETATM 11 O OAM 8YT . . . B 2 -11.758 -28.282 3.858 1 77.18 ? OAM 8YT 301 A 1 HETATM 12 C CAK 8YT . . . B 2 -12.08 -26.791 2.046 1 50.08 ? CAK 8YT 301 A 1 HETATM 13 C CAJ 8YT . . . B 2 -12.738 -27.514 0.9 1 41.09 ? CAJ 8YT 301 A 1 HETATM 14 C CAH 8YT . . . B 2 -13.994 -28.266 1.361 1 42.22 ? CAH 8YT 301 A 1 HETATM 15 O OAI 8YT . . . B 2 -15.038 -28.765 0.393 1 50.33 ? OAI 8YT 301 A 1 HETATM 16 C CAG 8YT . . . B 2 -14.414 -28.636 2.586 1 51.11 ? CAG 8YT 301 A 1 HETATM 17 C CAF 8YT . . . B 2 -15.597 -29.29 2.432 1 46.94 ? CAF 8YT 301 A 1 HETATM 18 C CAE 8YT . . . B 2 -15.909 -29.358 1.125 1 45.78 ? CAE 8YT 301 A 1 HETATM 19 C CAD 8YT . . . B 2 -17.128 -29.921 0.507 1 53.07 ? CAD 8YT 301 A 1 HETATM 20 C CAC 8YT . . . B 2 -18.063 -30.868 1.208 1 51.49 ? CAC 8YT 301 A 1 HETATM 21 C CAB 8YT . . . B 2 -17.105 -31.337 0.077 1 58.23 ? CAB 8YT 301 A 1 HETATM 22 C CAA 8YT . . . B 2 -17.465 -31.414 -1.418 1 58.8 ? CAA 8YT 301 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #