data_5NJ0
#
_model_server_result.job_id            OVMk7E_o1wrpT7Sr6KsYCA 
_model_server_result.datetime_utc      '2025-01-10 23:03:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nj0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    5NJ0 
#
_exptl.entry_id    5NJ0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              330.292 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[(2~{R})-2-(4-nitrophenyl)-2-oxidanyl-ethyl]-1,3-benzodioxole-5-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NJ0 
_cell.length_a            121.411 
_cell.length_b            121.411 
_cell.length_c            33.685 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NJ0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C16 H14 N2 O6' 
_chem_comp.formula_weight    330.292 
_chem_comp.id                8YW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[(2~{R})-2-(4-nitrophenyl)-2-oxidanyl-ethyl]-1,3-benzodioxole-5-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O19 C20 8YW sing 1 n n 
O19 C17 8YW sing 2 n n 
C20 O21 8YW sing 3 n n 
C17 C18 8YW doub 4 n y 
C17 C16 8YW sing 5 n y 
C18 C13 8YW sing 6 n y 
O21 C16 8YW sing 7 n n 
O12 C11 8YW doub 8 n n 
C16 C15 8YW doub 9 n y 
C13 C11 8YW sing 10 n n 
C13 C14 8YW doub 11 n y 
C11 N10 8YW sing 12 n n 
C15 C14 8YW sing 13 n y 
O25 N23 8YW sing 14 n n 
C9 N10 8YW sing 15 n n 
C9 C7 8YW sing 16 n n 
C5 C4 8YW doub 17 n y 
C5 C6 8YW sing 18 n y 
C4 C3 8YW sing 19 n y 
N23 C3 8YW sing 20 n n 
N23 O24 8YW doub 21 n n 
C6 C7 8YW sing 22 n n 
C6 C1 8YW doub 23 n y 
C3 C2 8YW doub 24 n y 
C7 O22 8YW sing 25 n n 
C1 C2 8YW sing 26 n y 
C4 H1 8YW sing 27 n n 
C5 H2 8YW sing 28 n n 
C2 H3 8YW sing 29 n n 
C1 H4 8YW sing 30 n n 
C7 H5 8YW sing 31 n n 
O22 H6 8YW sing 32 n n 
C9 H7 8YW sing 33 n n 
C9 H8 8YW sing 34 n n 
N10 H9 8YW sing 35 n n 
C18 H10 8YW sing 36 n n 
C20 H11 8YW sing 37 n n 
C15 H12 8YW sing 38 n n 
C14 H13 8YW sing 39 n n 
C20 H15 8YW sing 40 n n 
#
_atom_sites.entry_id                     5NJ0 
_atom_sites.fract_transf_matrix[1][1]    0.008236 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008236 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029687 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 8YW A 1 301 1 8YW CPA . 
C 3 SO4 A 1 302 1 SO4 SO4 . 
D 4 HOH A 1 401 8 HOH HOH . 
D 4 HOH A 2 402 40 HOH HOH . 
D 4 HOH A 3 403 82 HOH HOH . 
D 4 HOH A 4 404 4 HOH HOH . 
D 4 HOH A 5 405 36 HOH HOH . 
D 4 HOH A 6 406 78 HOH HOH . 
D 4 HOH A 7 407 2 HOH HOH . 
D 4 HOH A 8 408 57 HOH HOH . 
D 4 HOH A 9 409 81 HOH HOH . 
D 4 HOH A 10 410 13 HOH HOH . 
D 4 HOH A 11 411 79 HOH HOH . 
D 4 HOH A 12 412 6 HOH HOH . 
D 4 HOH A 13 413 12 HOH HOH . 
D 4 HOH A 14 414 73 HOH HOH . 
D 4 HOH A 15 415 71 HOH HOH . 
D 4 HOH A 16 416 76 HOH HOH . 
D 4 HOH A 17 417 69 HOH HOH . 
D 4 HOH A 18 418 28 HOH HOH . 
D 4 HOH A 19 419 43 HOH HOH . 
D 4 HOH A 20 420 52 HOH HOH . 
D 4 HOH A 21 421 10 HOH HOH . 
D 4 HOH A 22 422 68 HOH HOH . 
D 4 HOH A 23 423 64 HOH HOH . 
D 4 HOH A 24 424 29 HOH HOH . 
D 4 HOH A 25 425 34 HOH HOH . 
D 4 HOH A 26 426 3 HOH HOH . 
D 4 HOH A 27 427 11 HOH HOH . 
D 4 HOH A 28 428 35 HOH HOH . 
D 4 HOH A 29 429 83 HOH HOH . 
D 4 HOH A 30 430 15 HOH HOH . 
D 4 HOH A 31 431 63 HOH HOH . 
D 4 HOH A 32 432 74 HOH HOH . 
D 4 HOH A 33 433 55 HOH HOH . 
D 4 HOH A 34 434 72 HOH HOH . 
D 4 HOH A 35 435 42 HOH HOH . 
D 4 HOH A 36 436 23 HOH HOH . 
D 4 HOH A 37 437 75 HOH HOH . 
D 4 HOH A 38 438 60 HOH HOH . 
D 4 HOH A 39 439 53 HOH HOH . 
D 4 HOH A 40 440 16 HOH HOH . 
D 4 HOH A 41 441 32 HOH HOH . 
D 4 HOH A 42 442 7 HOH HOH . 
D 4 HOH A 43 443 39 HOH HOH . 
D 4 HOH A 44 444 65 HOH HOH . 
D 4 HOH A 45 445 9 HOH HOH . 
D 4 HOH A 46 446 80 HOH HOH . 
D 4 HOH A 47 447 54 HOH HOH . 
D 4 HOH A 48 448 58 HOH HOH . 
D 4 HOH A 49 449 1 HOH HOH . 
D 4 HOH A 50 450 5 HOH HOH . 
D 4 HOH A 51 451 38 HOH HOH . 
D 4 HOH A 52 452 17 HOH HOH . 
D 4 HOH A 53 453 51 HOH HOH . 
D 4 HOH A 54 454 33 HOH HOH . 
D 4 HOH A 55 455 24 HOH HOH . 
D 4 HOH A 56 456 20 HOH HOH . 
D 4 HOH A 57 457 44 HOH HOH . 
D 4 HOH A 58 458 62 HOH HOH . 
D 4 HOH A 59 459 18 HOH HOH . 
D 4 HOH A 60 460 21 HOH HOH . 
D 4 HOH A 61 461 25 HOH HOH . 
D 4 HOH A 62 462 14 HOH HOH . 
D 4 HOH A 63 463 26 HOH HOH . 
D 4 HOH A 64 464 30 HOH HOH . 
D 4 HOH A 65 465 77 HOH HOH . 
D 4 HOH A 66 466 56 HOH HOH . 
D 4 HOH A 67 467 19 HOH HOH . 
D 4 HOH A 68 468 66 HOH HOH . 
D 4 HOH A 69 469 31 HOH HOH . 
D 4 HOH A 70 470 59 HOH HOH . 
D 4 HOH A 71 471 70 HOH HOH . 
D 4 HOH A 72 472 41 HOH HOH . 
D 4 HOH A 73 473 46 HOH HOH . 
D 4 HOH A 74 474 22 HOH HOH . 
D 4 HOH A 75 475 37 HOH HOH . 
D 4 HOH A 76 476 84 HOH HOH . 
D 4 HOH A 77 477 27 HOH HOH . 
D 4 HOH A 78 478 61 HOH HOH . 
D 4 HOH A 79 479 47 HOH HOH . 
D 4 HOH A 80 480 45 HOH HOH . 
D 4 HOH A 81 481 49 HOH HOH . 
D 4 HOH A 82 482 67 HOH HOH . 
D 4 HOH A 83 483 50 HOH HOH . 
D 4 HOH A 84 484 48 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O24 8YW . . . B 2 -5.047 -25.777 4.815 1 55.83 ? O24 8YW 301 A 1 
HETATM 2 O O25 8YW . . . B 2 -5.074 -26.05 2.573 1 41.97 ? O25 8YW 301 A 1 
HETATM 3 N N23 8YW . . . B 2 -5.842 -26.051 3.732 1 45.7 ? N23 8YW 301 A 1 
HETATM 4 C C3 8YW . . . B 2 -7.143 -26.471 3.776 1 35.75 ? C3 8YW 301 A 1 
HETATM 5 C C4 8YW . . . B 2 -7.905 -26.471 2.641 1 28 ? C4 8YW 301 A 1 
HETATM 6 C C5 8YW . . . B 2 -9.162 -26.983 2.63 1 30.07 ? C5 8YW 301 A 1 
HETATM 7 C C2 8YW . . . B 2 -7.712 -26.951 4.917 1 30.64 ? C2 8YW 301 A 1 
HETATM 8 C C1 8YW . . . B 2 -8.985 -27.463 4.904 1 30.85 ? C1 8YW 301 A 1 
HETATM 9 C C6 8YW . . . B 2 -9.739 -27.45 3.775 1 30.97 ? C6 8YW 301 A 1 
HETATM 10 C C7 8YW . . . B 2 -10.998 -28.011 3.829 1 38.17 ? C7 8YW 301 A 1 
HETATM 11 O O22 8YW . . . B 2 -11.83 -27.598 4.916 1 47.89 ? O22 8YW 301 A 1 
HETATM 12 C C9 8YW . . . B 2 -11.755 -27.698 2.612 1 43.8 ? C9 8YW 301 A 1 
HETATM 13 N N10 8YW . . . B 2 -13.03 -28.453 2.674 1 44.4 ? N10 8YW 301 A 1 
HETATM 14 C C11 8YW . . . B 2 -13.691 -28.396 1.561 1 36.76 ? C11 8YW 301 A 1 
HETATM 15 O O12 8YW . . . B 2 -13.11 -27.86 0.606 1 27.81 ? O12 8YW 301 A 1 
HETATM 16 C C13 8YW . . . B 2 -14.977 -28.957 1.462 1 35.33 ? C13 8YW 301 A 1 
HETATM 17 C C18 8YW . . . B 2 -15.331 -29.435 0.191 1 37.27 ? C18 8YW 301 A 1 
HETATM 18 C C17 8YW . . . B 2 -16.463 -30.142 -0.045 1 34.94 ? C17 8YW 301 A 1 
HETATM 19 O O19 8YW . . . B 2 -16.912 -30.564 -1.255 1 35.38 ? O19 8YW 301 A 1 
HETATM 20 C C20 8YW . . . B 2 -18.2 -31.202 -0.943 1 35.84 ? C20 8YW 301 A 1 
HETATM 21 O O21 8YW . . . B 2 -18.394 -31.185 0.5 1 38.49 ? O21 8YW 301 A 1 
HETATM 22 C C16 8YW . . . B 2 -17.289 -30.47 0.942 1 31.8 ? C16 8YW 301 A 1 
HETATM 23 C C15 8YW . . . B 2 -16.954 -30.117 2.191 1 33.33 ? C15 8YW 301 A 1 
HETATM 24 C C14 8YW . . . B 2 -15.803 -29.374 2.504 1 32.95 ? C14 8YW 301 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           34 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           1158 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           24 
#