data_5NJ1
#
_model_server_result.job_id            uSQfcF2k1JqJv0PhMjPh7w 
_model_server_result.datetime_utc      '2024-11-24 04:36:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nj1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    5NJ1 
#
_exptl.entry_id    5NJ1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NJ1 
_cell.length_a            79.512 
_cell.length_b            79.512 
_cell.length_c            35.906 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NJ1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale1 A C ALY 1 A ALY 1 1_555 A N VAL 2 A VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale2 A C ALA 95 A ALA 95 1_555 A N ALY 96 A ALY 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale3 A C ALY 96 A ALY 96 1_555 A N LYS 97 A LYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
metalc ? metalc1 A NE2 HIS 15 A HIS 15 1_555 I PT1 A6R . A A6R 208 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc2 A O SER 60 A SER 60 1_555 J NA NA . A NA 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc3 A O CYS 64 A CYS 64 1_555 J NA NA . A NA 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc4 A OG SER 72 A SER 72 1_555 J NA NA . A NA 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc5 A O ARG 73 A ARG 73 1_555 J NA NA . A NA 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? 
metalc ? metalc6 F O3 NO3 . A NO3 205 1_555 J NA NA . A NA 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? 
metalc ? metalc7 J NA NA . A NA 209 1_555 K O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 132 n n 
C1 C2 EDO sing 133 n n 
C1 H11 EDO sing 134 n n 
C1 H12 EDO sing 135 n n 
O1 HO1 EDO sing 136 n n 
C2 O2 EDO sing 137 n n 
C2 H21 EDO sing 138 n n 
C2 H22 EDO sing 139 n n 
O2 HO2 EDO sing 140 n n 
#
_atom_sites.entry_id                     5NJ1 
_atom_sites.fract_transf_matrix[1][1]    0.012577 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012577 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02785 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 201 302 EDO EDO . 
C 2 EDO A 1 202 303 EDO EDO . 
D 3 NO3 A 1 203 401 NO3 NO3 . 
E 3 NO3 A 1 204 404 NO3 NO3 . 
F 3 NO3 A 1 205 406 NO3 NO3 . 
G 3 NO3 A 1 206 407 NO3 NO3 . 
H 3 NO3 A 1 207 408 NO3 NO3 . 
I 4 A6R A 1 208 2 A6R PTS . 
J 5 NA A 1 209 1 NA NA . 
K 6 HOH A 1 301 65 HOH HOH . 
K 6 HOH A 2 302 76 HOH HOH . 
K 6 HOH A 3 303 25 HOH HOH . 
K 6 HOH A 4 304 74 HOH HOH . 
K 6 HOH A 5 305 96 HOH HOH . 
K 6 HOH A 6 306 17 HOH HOH . 
K 6 HOH A 7 307 32 HOH HOH . 
K 6 HOH A 8 308 55 HOH HOH . 
K 6 HOH A 9 309 50 HOH HOH . 
K 6 HOH A 10 310 39 HOH HOH . 
K 6 HOH A 11 311 22 HOH HOH . 
K 6 HOH A 12 312 69 HOH HOH . 
K 6 HOH A 13 313 23 HOH HOH . 
K 6 HOH A 14 314 12 HOH HOH . 
K 6 HOH A 15 315 98 HOH HOH . 
K 6 HOH A 16 316 64 HOH HOH . 
K 6 HOH A 17 317 30 HOH HOH . 
K 6 HOH A 18 318 28 HOH HOH . 
K 6 HOH A 19 319 18 HOH HOH . 
K 6 HOH A 20 320 71 HOH HOH . 
K 6 HOH A 21 321 15 HOH HOH . 
K 6 HOH A 22 322 2 HOH HOH . 
K 6 HOH A 23 323 7 HOH HOH . 
K 6 HOH A 24 324 38 HOH HOH . 
K 6 HOH A 25 325 44 HOH HOH . 
K 6 HOH A 26 326 45 HOH HOH . 
K 6 HOH A 27 327 40 HOH HOH . 
K 6 HOH A 28 328 43 HOH HOH . 
K 6 HOH A 29 329 63 HOH HOH . 
K 6 HOH A 30 330 86 HOH HOH . 
K 6 HOH A 31 331 11 HOH HOH . 
K 6 HOH A 32 332 51 HOH HOH . 
K 6 HOH A 33 333 14 HOH HOH . 
K 6 HOH A 34 334 92 HOH HOH . 
K 6 HOH A 35 335 42 HOH HOH . 
K 6 HOH A 36 336 36 HOH HOH . 
K 6 HOH A 37 337 102 HOH HOH . 
K 6 HOH A 38 338 109 HOH HOH . 
K 6 HOH A 39 339 87 HOH HOH . 
K 6 HOH A 40 340 84 HOH HOH . 
K 6 HOH A 41 341 37 HOH HOH . 
K 6 HOH A 42 342 8 HOH HOH . 
K 6 HOH A 43 343 83 HOH HOH . 
K 6 HOH A 44 344 26 HOH HOH . 
K 6 HOH A 45 345 107 HOH HOH . 
K 6 HOH A 46 346 62 HOH HOH . 
K 6 HOH A 47 347 9 HOH HOH . 
K 6 HOH A 48 348 104 HOH HOH . 
K 6 HOH A 49 349 61 HOH HOH . 
K 6 HOH A 50 350 20 HOH HOH . 
K 6 HOH A 51 351 35 HOH HOH . 
K 6 HOH A 52 352 78 HOH HOH . 
K 6 HOH A 53 353 27 HOH HOH . 
K 6 HOH A 54 354 99 HOH HOH . 
K 6 HOH A 55 355 21 HOH HOH . 
K 6 HOH A 56 356 75 HOH HOH . 
K 6 HOH A 57 357 79 HOH HOH . 
K 6 HOH A 58 358 57 HOH HOH . 
K 6 HOH A 59 359 34 HOH HOH . 
K 6 HOH A 60 360 47 HOH HOH . 
K 6 HOH A 61 361 16 HOH HOH . 
K 6 HOH A 62 362 105 HOH HOH . 
K 6 HOH A 63 363 66 HOH HOH . 
K 6 HOH A 64 364 3 HOH HOH . 
K 6 HOH A 65 365 110 HOH HOH . 
K 6 HOH A 66 366 103 HOH HOH . 
K 6 HOH A 67 367 19 HOH HOH . 
K 6 HOH A 68 368 52 HOH HOH . 
K 6 HOH A 69 369 13 HOH HOH . 
K 6 HOH A 70 370 46 HOH HOH . 
K 6 HOH A 71 371 88 HOH HOH . 
K 6 HOH A 72 372 72 HOH HOH . 
K 6 HOH A 73 373 54 HOH HOH . 
K 6 HOH A 74 374 91 HOH HOH . 
K 6 HOH A 75 375 73 HOH HOH . 
K 6 HOH A 76 376 89 HOH HOH . 
K 6 HOH A 77 377 31 HOH HOH . 
K 6 HOH A 78 378 60 HOH HOH . 
K 6 HOH A 79 379 29 HOH HOH . 
K 6 HOH A 80 380 53 HOH HOH . 
K 6 HOH A 81 381 100 HOH HOH . 
K 6 HOH A 82 382 85 HOH HOH . 
K 6 HOH A 83 383 41 HOH HOH . 
K 6 HOH A 84 384 90 HOH HOH . 
K 6 HOH A 85 385 5 HOH HOH . 
K 6 HOH A 86 386 33 HOH HOH . 
K 6 HOH A 87 387 77 HOH HOH . 
K 6 HOH A 88 388 49 HOH HOH . 
K 6 HOH A 89 389 10 HOH HOH . 
K 6 HOH A 90 390 94 HOH HOH . 
K 6 HOH A 91 391 70 HOH HOH . 
K 6 HOH A 92 392 93 HOH HOH . 
K 6 HOH A 93 393 106 HOH HOH . 
K 6 HOH A 94 394 48 HOH HOH . 
K 6 HOH A 95 395 82 HOH HOH . 
K 6 HOH A 96 396 111 HOH HOH . 
K 6 HOH A 97 397 58 HOH HOH . 
K 6 HOH A 98 398 97 HOH HOH . 
K 6 HOH A 99 399 108 HOH HOH . 
K 6 HOH A 100 400 6 HOH HOH . 
K 6 HOH A 101 401 80 HOH HOH . 
K 6 HOH A 102 402 95 HOH HOH . 
K 6 HOH A 103 403 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 2 -29.642 -1.587 -25.409 0.8 51.81 ? C1 EDO 202 A 1 
HETATM 2 O O1 EDO . . . C 2 -29.774 -2.345 -24.216 0.8 51.91 ? O1 EDO 202 A 1 
HETATM 3 C C2 EDO . . . C 2 -28.185 -1.747 -25.789 0.8 56.74 ? C2 EDO 202 A 1 
HETATM 4 O O2 EDO . . . C 2 -27.794 -3.104 -25.527 0.8 59.75 ? O2 EDO 202 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#