data_5NJ4 # _model_server_result.job_id BdKSuchEfeTASBP0laQ07Q _model_server_result.datetime_utc '2024-11-16 16:31:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nj4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"IA","auth_seq_id":408}' # _entry.id 5NJ4 # _exptl.entry_id 5NJ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NJ4 _cell.length_a 226.5 _cell.length_b 226.5 _cell.length_c 113.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NJ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 K N N ? 7 L N N ? 7 N N N ? 7 O N N ? 7 P N N ? 7 Q N N ? 7 GA N N ? 7 HA N N ? 7 IA N N ? 7 JA N N ? 7 KA N N ? 7 LA N N ? 7 MA N N ? 7 NA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 1 C CYS 1 1_555 I CG3 DGA . C DGA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.617 ? covale ? covale2 A SG CYS 87 C CYS 87 1_555 E CAB HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.754 ? covale ? covale3 A SG CYS 90 C CYS 90 1_555 E CAC HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? covale ? covale4 A SG CYS 132 C CYS 132 1_555 F CAB HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.797 ? covale ? covale5 A SG CYS 135 C CYS 135 1_555 F CAC HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? covale ? covale6 A SG CYS 244 C CYS 244 1_555 G CAB HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.773 ? covale ? covale7 A SG CYS 247 C CYS 247 1_555 G CAC HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? covale ? covale8 A SG CYS 305 C CYS 305 1_555 H CAB HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.785 ? covale ? covale9 A SG CYS 308 C CYS 308 1_555 H CAC HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? covale ? covale10 B C FME 1 H FME 1 1_555 B N TYR 2 H TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A SD MET 74 C MET 74 1_555 E FE HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc2 A NE2 HIS 91 C HIS 91 1_555 E FE HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc3 A SD MET 110 C MET 110 1_555 F FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc4 A NE2 HIS 124 C HIS 124 1_555 H FE HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc5 A NE2 HIS 136 C HIS 136 1_555 F FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc6 A SD MET 233 C MET 233 1_555 G FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc7 A NE2 HIS 248 C HIS 248 1_555 G FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc8 A NE2 HIS 309 C HIS 309 1_555 H FE HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc9 C NE2 HIS 190 L HIS 190 1_555 AA FE FE2 . L FE2 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc10 C NE2 HIS 230 L HIS 230 1_555 AA FE FE2 . L FE2 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc11 AA FE FE2 . L FE2 306 1_555 D NE2 HIS 217 M HIS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc12 AA FE FE2 . L FE2 306 1_555 D OE1 GLU 232 M GLU 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc13 AA FE FE2 . L FE2 306 1_555 D OE2 GLU 232 M GLU 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc14 AA FE FE2 . L FE2 306 1_555 D NE2 HIS 264 M HIS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 1087 n n S O2 SO4 doub 1088 n n S O3 SO4 sing 1089 n n S O4 SO4 sing 1090 n n # _atom_sites.entry_id 5NJ4 _atom_sites.fract_transf_matrix[1][1] 0.004415 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004415 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00878 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HEC C 1 401 401 HEC HEC . F 5 HEC C 1 402 402 HEC HEC . G 5 HEC C 1 403 403 HEC HEC . H 5 HEC C 1 404 404 HEC HEC . I 6 DGA C 1 405 1278 DGA DGA . J 7 SO4 C 1 406 7 SO4 SO4 . K 7 SO4 C 1 407 11 SO4 SO4 . L 7 SO4 C 1 408 12 SO4 SO4 . M 8 LDA H 1 701 701 LDA LDA . N 7 SO4 H 1 702 1 SO4 SO4 . O 7 SO4 H 1 703 10 SO4 SO4 . P 7 SO4 H 1 704 18 SO4 SO4 . Q 7 SO4 H 1 705 21 SO4 SO4 . R 8 LDA H 1 706 1 LDA LDA . S 8 LDA H 1 707 2 LDA LDA . T 9 HTO H 1 708 2 HTO HTO . U 9 HTO H 1 709 3 HTO HTO . V 10 BCB L 1 301 400 BCB BCB . W 10 BCB L 1 302 401 BCB BCB . X 11 BPB L 1 303 402 BPB BPB . Y 8 LDA L 1 304 8 LDA LDA . Z 9 HTO L 1 305 1 HTO HTO . AA 12 FE2 L 1 306 500 FE2 FE2 . BA 13 MQ7 M 1 401 501 MQ7 MQ7 . CA 10 BCB M 1 402 400 BCB BCB . DA 10 BCB M 1 403 401 BCB BCB . EA 11 BPB M 1 404 402 BPB BPB . FA 14 NS5 M 1 405 600 NS5 NS5 . GA 7 SO4 M 1 406 3 SO4 SO4 . HA 7 SO4 M 1 407 5 SO4 SO4 . IA 7 SO4 M 1 408 6 SO4 SO4 . JA 7 SO4 M 1 409 9 SO4 SO4 . KA 7 SO4 M 1 410 13 SO4 SO4 . LA 7 SO4 M 1 411 15 SO4 SO4 . MA 7 SO4 M 1 412 19 SO4 SO4 . NA 7 SO4 M 1 413 20 SO4 SO4 . OA 8 LDA M 1 414 3 LDA LDA . PA 8 LDA M 1 415 4 LDA LDA . QA 8 LDA M 1 416 7 LDA LDA . RA 15 HOH C 1 501 97 HOH HOH . RA 15 HOH C 2 502 115 HOH HOH . RA 15 HOH C 3 503 103 HOH HOH . RA 15 HOH C 4 504 119 HOH HOH . RA 15 HOH C 5 505 107 HOH HOH . RA 15 HOH C 6 506 144 HOH HOH . RA 15 HOH C 7 507 132 HOH HOH . RA 15 HOH C 8 508 117 HOH HOH . RA 15 HOH C 9 509 57 HOH HOH . RA 15 HOH C 10 510 94 HOH HOH . RA 15 HOH C 11 511 71 HOH HOH . RA 15 HOH C 12 512 138 HOH HOH . RA 15 HOH C 13 513 101 HOH HOH . RA 15 HOH C 14 514 135 HOH HOH . RA 15 HOH C 15 515 37 HOH HOH . RA 15 HOH C 16 516 114 HOH HOH . RA 15 HOH C 17 517 91 HOH HOH . RA 15 HOH C 18 518 104 HOH HOH . RA 15 HOH C 19 519 36 HOH HOH . RA 15 HOH C 20 520 77 HOH HOH . RA 15 HOH C 21 521 39 HOH HOH . RA 15 HOH C 22 522 60 HOH HOH . RA 15 HOH C 23 523 38 HOH HOH . RA 15 HOH C 24 524 49 HOH HOH . RA 15 HOH C 25 525 81 HOH HOH . RA 15 HOH C 26 526 50 HOH HOH . RA 15 HOH C 27 527 78 HOH HOH . RA 15 HOH C 28 528 87 HOH HOH . RA 15 HOH C 29 529 45 HOH HOH . RA 15 HOH C 30 530 64 HOH HOH . RA 15 HOH C 31 531 17 HOH HOH . RA 15 HOH C 32 532 12 HOH HOH . RA 15 HOH C 33 533 86 HOH HOH . RA 15 HOH C 34 534 67 HOH HOH . RA 15 HOH C 35 535 73 HOH HOH . RA 15 HOH C 36 536 54 HOH HOH . RA 15 HOH C 37 537 68 HOH HOH . RA 15 HOH C 38 538 92 HOH HOH . RA 15 HOH C 39 539 139 HOH HOH . RA 15 HOH C 40 540 11 HOH HOH . RA 15 HOH C 41 541 128 HOH HOH . RA 15 HOH C 42 542 44 HOH HOH . RA 15 HOH C 43 543 83 HOH HOH . RA 15 HOH C 44 544 100 HOH HOH . RA 15 HOH C 45 545 79 HOH HOH . RA 15 HOH C 46 546 143 HOH HOH . RA 15 HOH C 47 547 90 HOH HOH . RA 15 HOH C 48 548 102 HOH HOH . RA 15 HOH C 49 549 88 HOH HOH . RA 15 HOH C 50 550 89 HOH HOH . RA 15 HOH C 51 551 98 HOH HOH . RA 15 HOH C 52 552 96 HOH HOH . RA 15 HOH C 53 553 65 HOH HOH . RA 15 HOH C 54 554 15 HOH HOH . RA 15 HOH C 55 555 146 HOH HOH . RA 15 HOH C 56 556 130 HOH HOH . RA 15 HOH C 57 557 82 HOH HOH . RA 15 HOH C 58 558 134 HOH HOH . SA 15 HOH H 1 801 109 HOH HOH . SA 15 HOH H 2 802 62 HOH HOH . SA 15 HOH H 3 803 113 HOH HOH . SA 15 HOH H 4 804 121 HOH HOH . SA 15 HOH H 5 805 2 HOH HOH . SA 15 HOH H 6 806 127 HOH HOH . SA 15 HOH H 7 807 140 HOH HOH . SA 15 HOH H 8 808 122 HOH HOH . SA 15 HOH H 9 809 116 HOH HOH . SA 15 HOH H 10 810 80 HOH HOH . SA 15 HOH H 11 811 118 HOH HOH . SA 15 HOH H 12 812 27 HOH HOH . SA 15 HOH H 13 813 26 HOH HOH . SA 15 HOH H 14 814 75 HOH HOH . SA 15 HOH H 15 815 85 HOH HOH . SA 15 HOH H 16 816 145 HOH HOH . SA 15 HOH H 17 817 61 HOH HOH . SA 15 HOH H 18 818 125 HOH HOH . SA 15 HOH H 19 819 95 HOH HOH . SA 15 HOH H 20 820 142 HOH HOH . SA 15 HOH H 21 821 120 HOH HOH . SA 15 HOH H 22 822 141 HOH HOH . SA 15 HOH H 23 823 99 HOH HOH . TA 15 HOH L 1 401 106 HOH HOH . TA 15 HOH L 2 402 111 HOH HOH . TA 15 HOH L 3 403 52 HOH HOH . TA 15 HOH L 4 404 72 HOH HOH . TA 15 HOH L 5 405 18 HOH HOH . TA 15 HOH L 6 406 13 HOH HOH . TA 15 HOH L 7 407 28 HOH HOH . TA 15 HOH L 8 408 63 HOH HOH . TA 15 HOH L 9 409 58 HOH HOH . TA 15 HOH L 10 410 41 HOH HOH . TA 15 HOH L 11 411 35 HOH HOH . TA 15 HOH L 12 412 59 HOH HOH . TA 15 HOH L 13 413 34 HOH HOH . TA 15 HOH L 14 414 9 HOH HOH . TA 15 HOH L 15 415 108 HOH HOH . TA 15 HOH L 16 416 33 HOH HOH . TA 15 HOH L 17 417 84 HOH HOH . TA 15 HOH L 18 418 66 HOH HOH . TA 15 HOH L 19 419 40 HOH HOH . TA 15 HOH L 20 420 137 HOH HOH . TA 15 HOH L 21 421 29 HOH HOH . TA 15 HOH L 22 422 14 HOH HOH . TA 15 HOH L 23 423 53 HOH HOH . TA 15 HOH L 24 424 10 HOH HOH . UA 15 HOH M 1 501 93 HOH HOH . UA 15 HOH M 2 502 105 HOH HOH . UA 15 HOH M 3 503 5 HOH HOH . UA 15 HOH M 4 504 123 HOH HOH . UA 15 HOH M 5 505 43 HOH HOH . UA 15 HOH M 6 506 112 HOH HOH . UA 15 HOH M 7 507 24 HOH HOH . UA 15 HOH M 8 508 126 HOH HOH . UA 15 HOH M 9 509 6 HOH HOH . UA 15 HOH M 10 510 51 HOH HOH . UA 15 HOH M 11 511 1 HOH HOH . UA 15 HOH M 12 512 70 HOH HOH . UA 15 HOH M 13 513 55 HOH HOH . UA 15 HOH M 14 514 110 HOH HOH . UA 15 HOH M 15 515 30 HOH HOH . UA 15 HOH M 16 516 31 HOH HOH . UA 15 HOH M 17 517 32 HOH HOH . UA 15 HOH M 18 518 4 HOH HOH . UA 15 HOH M 19 519 8 HOH HOH . UA 15 HOH M 20 520 131 HOH HOH . UA 15 HOH M 21 521 21 HOH HOH . UA 15 HOH M 22 522 42 HOH HOH . UA 15 HOH M 23 523 3 HOH HOH . UA 15 HOH M 24 524 19 HOH HOH . UA 15 HOH M 25 525 16 HOH HOH . UA 15 HOH M 26 526 133 HOH HOH . UA 15 HOH M 27 527 48 HOH HOH . UA 15 HOH M 28 528 76 HOH HOH . UA 15 HOH M 29 529 22 HOH HOH . UA 15 HOH M 30 530 23 HOH HOH . UA 15 HOH M 31 531 136 HOH HOH . UA 15 HOH M 32 532 25 HOH HOH . UA 15 HOH M 33 533 47 HOH HOH . UA 15 HOH M 34 534 20 HOH HOH . UA 15 HOH M 35 535 74 HOH HOH . UA 15 HOH M 36 536 69 HOH HOH . UA 15 HOH M 37 537 7 HOH HOH . UA 15 HOH M 38 538 56 HOH HOH . UA 15 HOH M 39 539 124 HOH HOH . UA 15 HOH M 40 540 129 HOH HOH . UA 15 HOH M 41 541 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . IA 7 32.427 -38.671 12.526 1 77.59 ? S SO4 408 M 1 HETATM 2 O O1 SO4 . . . IA 7 31.27 -38.152 11.783 1 84.5 ? O1 SO4 408 M 1 HETATM 3 O O2 SO4 . . . IA 7 33.454 -39.122 11.57 1 83.88 ? O2 SO4 408 M 1 HETATM 4 O O3 SO4 . . . IA 7 32.89 -37.566 13.372 1 86.85 ? O3 SO4 408 M 1 HETATM 5 O O4 SO4 . . . IA 7 32.071 -39.838 13.348 1 90.01 ? O4 SO4 408 M 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #