data_5NJ7
#
_model_server_result.job_id            rWjW2o3nGF9qn7h7xT41UQ 
_model_server_result.datetime_utc      '2024-11-24 02:59:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nj7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    5NJ7 
#
_exptl.entry_id    5NJ7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              418.117 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            arsenoplatin-1 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.17 
_cell.angle_gamma         90 
_cell.entry_id            5NJ7 
_cell.length_a            100.535 
_cell.length_b            32.855 
_cell.length_c            72.939 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NJ7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf5 B SG CYS 26 B CYS 26 1_555 B SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf6 B SG CYS 40 B CYS 40 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf7 B SG CYS 58 B CYS 58 1_555 B SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
disulf ? disulf8 B SG CYS 65 B CYS 65 1_555 B SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc1 A NE2 HIS 105 A HIS 105 1_555 C PT1 A6R . A A6R 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc2 A ND1 HIS 119 A HIS 119 1_555 D PT1 A6R . A A6R 202 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc3 B NE2 HIS 105 B HIS 105 1_555 F PT1 A6R . B A6R 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc4 B ND1 HIS 119 B HIS 119 1_555 E PT1 A6R . B A6R 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.115 ? 
#
_chem_comp.formula           'C4 H8 As N2 O4 Pt' 
_chem_comp.formula_weight    418.117 
_chem_comp.id                A6R 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              arsenoplatin-1 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 A6R sing 1 n n 
C3 C4 A6R sing 2 n n 
C3 O2 A6R sing 3 n n 
C3 N2 A6R doub 4 n n 
PT1 AS1 A6R sing 5 n n 
PT1 N1 A6R sing 6 n n 
PT1 N2 A6R sing 7 n n 
AS1 O1 A6R sing 8 n n 
AS1 O2 A6R sing 9 n n 
AS1 O3 A6R sing 10 n n 
AS1 O4 A6R sing 11 n n 
O1 C1 A6R sing 12 n n 
N1 C1 A6R doub 13 n n 
C2 H1 A6R sing 14 n n 
C2 H2 A6R sing 15 n n 
C2 H3 A6R sing 16 n n 
C4 H4 A6R sing 17 n n 
C4 H5 A6R sing 18 n n 
C4 H6 A6R sing 19 n n 
O3 H7 A6R sing 20 n n 
O4 H8 A6R sing 21 n n 
#
_atom_sites.entry_id                     5NJ7 
_atom_sites.fract_transf_matrix[1][1]    0.009947 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000029 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.030437 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01371 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A6R A 1 201 1 A6R PTS . 
D 2 A6R A 1 202 3 A6R PTS . 
E 2 A6R B 1 201 2 A6R PTS . 
F 2 A6R B 1 202 4 A6R PTS . 
G 3 HOH A 1 301 54 HOH HOH . 
G 3 HOH A 2 302 3 HOH HOH . 
G 3 HOH A 3 303 44 HOH HOH . 
G 3 HOH A 4 304 111 HOH HOH . 
G 3 HOH A 5 305 119 HOH HOH . 
G 3 HOH A 6 306 97 HOH HOH . 
G 3 HOH A 7 307 120 HOH HOH . 
G 3 HOH A 8 308 4 HOH HOH . 
G 3 HOH A 9 309 79 HOH HOH . 
G 3 HOH A 10 310 28 HOH HOH . 
G 3 HOH A 11 311 71 HOH HOH . 
G 3 HOH A 12 312 24 HOH HOH . 
G 3 HOH A 13 313 69 HOH HOH . 
G 3 HOH A 14 314 42 HOH HOH . 
G 3 HOH A 15 315 35 HOH HOH . 
G 3 HOH A 16 316 135 HOH HOH . 
G 3 HOH A 17 317 34 HOH HOH . 
G 3 HOH A 18 318 118 HOH HOH . 
G 3 HOH A 19 319 112 HOH HOH . 
G 3 HOH A 20 320 63 HOH HOH . 
G 3 HOH A 21 321 46 HOH HOH . 
G 3 HOH A 22 322 70 HOH HOH . 
G 3 HOH A 23 323 81 HOH HOH . 
G 3 HOH A 24 324 109 HOH HOH . 
G 3 HOH A 25 325 121 HOH HOH . 
G 3 HOH A 26 326 91 HOH HOH . 
G 3 HOH A 27 327 108 HOH HOH . 
G 3 HOH A 28 328 87 HOH HOH . 
G 3 HOH A 29 329 15 HOH HOH . 
G 3 HOH A 30 330 122 HOH HOH . 
G 3 HOH A 31 331 100 HOH HOH . 
G 3 HOH A 32 332 83 HOH HOH . 
G 3 HOH A 33 333 114 HOH HOH . 
G 3 HOH A 34 334 32 HOH HOH . 
G 3 HOH A 35 335 68 HOH HOH . 
G 3 HOH A 36 336 95 HOH HOH . 
G 3 HOH A 37 337 110 HOH HOH . 
G 3 HOH A 38 338 11 HOH HOH . 
G 3 HOH A 39 339 117 HOH HOH . 
G 3 HOH A 40 340 59 HOH HOH . 
G 3 HOH A 41 341 105 HOH HOH . 
G 3 HOH A 42 342 130 HOH HOH . 
G 3 HOH A 43 343 12 HOH HOH . 
G 3 HOH A 44 344 106 HOH HOH . 
G 3 HOH A 45 345 10 HOH HOH . 
G 3 HOH A 46 346 101 HOH HOH . 
G 3 HOH A 47 347 86 HOH HOH . 
G 3 HOH A 48 348 90 HOH HOH . 
G 3 HOH A 49 349 84 HOH HOH . 
G 3 HOH A 50 350 33 HOH HOH . 
G 3 HOH A 51 351 88 HOH HOH . 
G 3 HOH A 52 352 129 HOH HOH . 
G 3 HOH A 53 353 48 HOH HOH . 
G 3 HOH A 54 354 132 HOH HOH . 
G 3 HOH A 55 355 99 HOH HOH . 
G 3 HOH A 56 356 2 HOH HOH . 
G 3 HOH A 57 357 45 HOH HOH . 
G 3 HOH A 58 358 9 HOH HOH . 
G 3 HOH A 59 359 64 HOH HOH . 
G 3 HOH A 60 360 31 HOH HOH . 
G 3 HOH A 61 361 142 HOH HOH . 
G 3 HOH A 62 362 5 HOH HOH . 
G 3 HOH A 63 363 115 HOH HOH . 
G 3 HOH A 64 364 49 HOH HOH . 
G 3 HOH A 65 365 139 HOH HOH . 
G 3 HOH A 66 366 66 HOH HOH . 
G 3 HOH A 67 367 20 HOH HOH . 
G 3 HOH A 68 368 107 HOH HOH . 
H 3 HOH B 1 301 67 HOH HOH . 
H 3 HOH B 2 302 141 HOH HOH . 
H 3 HOH B 3 303 26 HOH HOH . 
H 3 HOH B 4 304 47 HOH HOH . 
H 3 HOH B 5 305 21 HOH HOH . 
H 3 HOH B 6 306 55 HOH HOH . 
H 3 HOH B 7 307 89 HOH HOH . 
H 3 HOH B 8 308 82 HOH HOH . 
H 3 HOH B 9 309 52 HOH HOH . 
H 3 HOH B 10 310 76 HOH HOH . 
H 3 HOH B 11 311 60 HOH HOH . 
H 3 HOH B 12 312 25 HOH HOH . 
H 3 HOH B 13 313 133 HOH HOH . 
H 3 HOH B 14 314 8 HOH HOH . 
H 3 HOH B 15 315 56 HOH HOH . 
H 3 HOH B 16 316 128 HOH HOH . 
H 3 HOH B 17 317 93 HOH HOH . 
H 3 HOH B 18 318 77 HOH HOH . 
H 3 HOH B 19 319 80 HOH HOH . 
H 3 HOH B 20 320 65 HOH HOH . 
H 3 HOH B 21 321 51 HOH HOH . 
H 3 HOH B 22 322 36 HOH HOH . 
H 3 HOH B 23 323 126 HOH HOH . 
H 3 HOH B 24 324 134 HOH HOH . 
H 3 HOH B 25 325 127 HOH HOH . 
H 3 HOH B 26 326 72 HOH HOH . 
H 3 HOH B 27 327 37 HOH HOH . 
H 3 HOH B 28 328 103 HOH HOH . 
H 3 HOH B 29 329 16 HOH HOH . 
H 3 HOH B 30 330 62 HOH HOH . 
H 3 HOH B 31 331 57 HOH HOH . 
H 3 HOH B 32 332 53 HOH HOH . 
H 3 HOH B 33 333 14 HOH HOH . 
H 3 HOH B 34 334 50 HOH HOH . 
H 3 HOH B 35 335 19 HOH HOH . 
H 3 HOH B 36 336 41 HOH HOH . 
H 3 HOH B 37 337 43 HOH HOH . 
H 3 HOH B 38 338 73 HOH HOH . 
H 3 HOH B 39 339 104 HOH HOH . 
H 3 HOH B 40 340 75 HOH HOH . 
H 3 HOH B 41 341 143 HOH HOH . 
H 3 HOH B 42 342 23 HOH HOH . 
H 3 HOH B 43 343 125 HOH HOH . 
H 3 HOH B 44 344 18 HOH HOH . 
H 3 HOH B 45 345 58 HOH HOH . 
H 3 HOH B 46 346 138 HOH HOH . 
H 3 HOH B 47 347 27 HOH HOH . 
H 3 HOH B 48 348 39 HOH HOH . 
H 3 HOH B 49 349 13 HOH HOH . 
H 3 HOH B 50 350 30 HOH HOH . 
H 3 HOH B 51 351 116 HOH HOH . 
H 3 HOH B 52 352 17 HOH HOH . 
H 3 HOH B 53 353 92 HOH HOH . 
H 3 HOH B 54 354 40 HOH HOH . 
H 3 HOH B 55 355 140 HOH HOH . 
H 3 HOH B 56 356 78 HOH HOH . 
H 3 HOH B 57 357 1 HOH HOH . 
H 3 HOH B 58 358 29 HOH HOH . 
H 3 HOH B 59 359 94 HOH HOH . 
H 3 HOH B 60 360 85 HOH HOH . 
H 3 HOH B 61 361 7 HOH HOH . 
H 3 HOH B 62 362 123 HOH HOH . 
H 3 HOH B 63 363 137 HOH HOH . 
H 3 HOH B 64 364 61 HOH HOH . 
H 3 HOH B 65 365 38 HOH HOH . 
H 3 HOH B 66 366 102 HOH HOH . 
H 3 HOH B 67 367 113 HOH HOH . 
H 3 HOH B 68 368 136 HOH HOH . 
H 3 HOH B 69 369 22 HOH HOH . 
H 3 HOH B 70 370 124 HOH HOH . 
H 3 HOH B 71 371 74 HOH HOH . 
H 3 HOH B 72 372 98 HOH HOH . 
H 3 HOH B 73 373 131 HOH HOH . 
H 3 HOH B 74 374 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 A6R . A . E 2 37.822 -25.184 71.893 0.6 41.48 ? C2 A6R 201 B 1 
HETATM 2 C C3 A6R . A . E 2 41.829 -21.671 76.136 0.6 49.42 ? C3 A6R 201 B 1 
HETATM 3 C C4 A6R . A . E 2 42.715 -20.956 77.125 0.6 49.42 ? C4 A6R 201 B 1 
HETATM 4 PT PT1 A6R . A . E 2 40.61 -22.463 73.711 0.6 41.14 ? PT1 A6R 201 B 1 
HETATM 5 AS AS1 A6R . A . E 2 39.832 -23.721 75.438 0.6 54.7 ? AS1 A6R 201 B 1 
HETATM 6 O O1 A6R . A . E 2 38.619 -24.73 74.134 0.6 41.29 ? O1 A6R 201 B 1 
HETATM 7 O O2 A6R . A . E 2 41.043 -22.621 76.594 0.6 48.86 ? O2 A6R 201 B 1 
HETATM 8 O O3 A6R . A . E 2 38.495 -23.22 76.395 0.6 53.75 ? O3 A6R 201 B 1 
HETATM 9 O O4 A6R . A . E 2 40.381 -25.228 76.065 0.6 49.32 ? O4 A6R 201 B 1 
HETATM 10 N N1 A6R . A . E 2 39.503 -23.551 72.467 0.6 34.08 ? N1 A6R 201 B 1 
HETATM 11 N N2 A6R . A . E 2 41.886 -21.434 74.885 0.6 43.71 ? N2 A6R 201 B 1 
HETATM 12 C C1 A6R . A . E 2 38.692 -24.44 72.874 0.6 39.77 ? C1 A6R 201 B 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           12 
#