data_5NJE # _model_server_result.job_id a_xlzga0eQMdKXEdsTK9YQ _model_server_result.datetime_utc '2024-12-22 11:25:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nje # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 5NJE # _exptl.entry_id 5NJE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 296.931 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Alpha-Bromo-3-Iodotoluene _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.73 _cell.angle_gamma 90 _cell.entry_id 5NJE _cell.length_a 33.402 _cell.length_b 93.601 _cell.length_c 36.175 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NJE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H6 Br I' _chem_comp.formula_weight 296.931 _chem_comp.id 8Z5 _chem_comp.mon_nstd_flag . _chem_comp.name Alpha-Bromo-3-Iodotoluene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 8Z5 sing 1 n n C BR 8Z5 sing 2 n n C6 C1 8Z5 doub 3 n y C6 C5 8Z5 sing 4 n y C1 C2 8Z5 sing 5 n y I C5 8Z5 sing 6 n n C5 C4 8Z5 doub 7 n y C2 C3 8Z5 doub 8 n y C4 C3 8Z5 sing 9 n y C4 H1 8Z5 sing 10 n n C6 H2 8Z5 sing 11 n n C3 H3 8Z5 sing 12 n n C2 H4 8Z5 sing 13 n n C H5 8Z5 sing 14 n n C H6 8Z5 sing 15 n n # _atom_sites.entry_id 5NJE _atom_sites.fract_transf_matrix[1][1] 0.029938 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006216 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028233 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8Z5 A 1 701 1 8Z5 DRG . C 3 HOH A 1 801 16 HOH HOH . C 3 HOH A 2 802 3 HOH HOH . C 3 HOH A 3 803 2 HOH HOH . C 3 HOH A 4 804 1 HOH HOH . C 3 HOH A 5 805 14 HOH HOH . C 3 HOH A 6 806 8 HOH HOH . C 3 HOH A 7 807 4 HOH HOH . C 3 HOH A 8 808 9 HOH HOH . C 3 HOH A 9 809 5 HOH HOH . C 3 HOH A 10 810 7 HOH HOH . C 3 HOH A 11 811 6 HOH HOH . C 3 HOH A 12 812 12 HOH HOH . C 3 HOH A 13 813 11 HOH HOH . C 3 HOH A 14 814 10 HOH HOH . C 3 HOH A 15 815 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 8Z5 . . . B 2 89.807 12.708 79.063 0.31 36.45 ? C4 8Z5 701 A 1 HETATM 2 C C5 8Z5 . . . B 2 91.101 12.98 78.65 0.31 40.68 ? C5 8Z5 701 A 1 HETATM 3 C C6 8Z5 . . . B 2 91.462 14.269 78.274 0.31 43.82 ? C6 8Z5 701 A 1 HETATM 4 C C3 8Z5 . . . B 2 88.865 13.721 79.109 0.31 40.56 ? C3 8Z5 701 A 1 HETATM 5 I I 8Z5 . . . B 2 92.486 11.393 78.606 0.31 41.16 ? I 8Z5 701 A 1 HETATM 6 C C2 8Z5 . . . B 2 89.221 15.007 78.738 0.31 44.14 ? C2 8Z5 701 A 1 HETATM 7 C C1 8Z5 . . . B 2 90.512 15.286 78.323 0.31 45.4 ? C1 8Z5 701 A 1 HETATM 8 C C 8Z5 . . . B 2 90.851 16.686 77.932 0.31 48.67 ? C 8Z5 701 A 1 HETATM 9 BR BR 8Z5 . . . B 2 91.121 17.986 79.351 0.31 67.2 ? BR 8Z5 701 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #