data_5NJP
#
_model_server_result.job_id            QVOdsffbMVWtaeJR_pvHng 
_model_server_result.datetime_utc      '2024-11-13 07:27:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5njp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":206}' 
#
_entry.id    5NJP 
#
_exptl.entry_id    5NJP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NJP 
_cell.length_a            79.61 
_cell.length_b            79.61 
_cell.length_c            38.3 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NJP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 NAG NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG A 201 NAG 
2 n B NAG 2 B 2 NAG A 202 NAG 
2 n B NAG 3 B 3 NAG A 203 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
covale ? covale1 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale2 B O4 NAG . B NAG 2 1_555 B C1 NAG . B NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
metalc ? metalc1 A O SER 60 A SER 60 1_555 E NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc2 A O CYS 64 A CYS 64 1_555 E NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc3 A OG SER 72 A SER 72 1_555 E NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc4 A O ARG 73 A ARG 73 1_555 E NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? 
metalc ? metalc5 E NA NA . A NA 206 1_555 F O HOH . A HOH 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? 
metalc ? metalc6 E NA NA . A NA 206 1_555 F O HOH . A HOH 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5NJP 
_atom_sites.fract_transf_matrix[1][1]    0.012561 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012561 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02611 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CL A 1 204 130 CL CL . 
D 3 CL A 1 205 131 CL CL . 
E 4 NA A 1 206 132 NA NA . 
F 5 HOH A 1 301 192 HOH HOH . 
F 5 HOH A 2 302 191 HOH HOH . 
F 5 HOH A 3 303 184 HOH HOH . 
F 5 HOH A 4 304 144 HOH HOH . 
F 5 HOH A 5 305 152 HOH HOH . 
F 5 HOH A 6 306 159 HOH HOH . 
F 5 HOH A 7 307 135 HOH HOH . 
F 5 HOH A 8 308 134 HOH HOH . 
F 5 HOH A 9 309 187 HOH HOH . 
F 5 HOH A 10 310 188 HOH HOH . 
F 5 HOH A 11 311 151 HOH HOH . 
F 5 HOH A 12 312 141 HOH HOH . 
F 5 HOH A 13 313 136 HOH HOH . 
F 5 HOH A 14 314 180 HOH HOH . 
F 5 HOH A 15 315 156 HOH HOH . 
F 5 HOH A 16 316 167 HOH HOH . 
F 5 HOH A 17 317 155 HOH HOH . 
F 5 HOH A 18 318 166 HOH HOH . 
F 5 HOH A 19 319 174 HOH HOH . 
F 5 HOH A 20 320 190 HOH HOH . 
F 5 HOH A 21 321 146 HOH HOH . 
F 5 HOH A 22 322 153 HOH HOH . 
F 5 HOH A 23 323 176 HOH HOH . 
F 5 HOH A 24 324 140 HOH HOH . 
F 5 HOH A 25 325 183 HOH HOH . 
F 5 HOH A 26 326 168 HOH HOH . 
F 5 HOH A 27 327 148 HOH HOH . 
F 5 HOH A 28 328 182 HOH HOH . 
F 5 HOH A 29 329 177 HOH HOH . 
F 5 HOH A 30 330 143 HOH HOH . 
F 5 HOH A 31 331 172 HOH HOH . 
F 5 HOH A 32 332 158 HOH HOH . 
F 5 HOH A 33 333 137 HOH HOH . 
F 5 HOH A 34 334 145 HOH HOH . 
F 5 HOH A 35 335 170 HOH HOH . 
F 5 HOH A 36 336 138 HOH HOH . 
F 5 HOH A 37 337 133 HOH HOH . 
F 5 HOH A 38 338 164 HOH HOH . 
F 5 HOH A 39 339 173 HOH HOH . 
F 5 HOH A 40 340 169 HOH HOH . 
F 5 HOH A 41 341 142 HOH HOH . 
F 5 HOH A 42 342 163 HOH HOH . 
F 5 HOH A 43 343 179 HOH HOH . 
F 5 HOH A 44 344 171 HOH HOH . 
F 5 HOH A 45 345 161 HOH HOH . 
F 5 HOH A 46 346 139 HOH HOH . 
F 5 HOH A 47 347 149 HOH HOH . 
F 5 HOH A 48 348 186 HOH HOH . 
F 5 HOH A 49 349 165 HOH HOH . 
F 5 HOH A 50 350 175 HOH HOH . 
F 5 HOH A 51 351 181 HOH HOH . 
F 5 HOH A 52 352 157 HOH HOH . 
F 5 HOH A 53 353 147 HOH HOH . 
F 5 HOH A 54 354 162 HOH HOH . 
F 5 HOH A 55 355 150 HOH HOH . 
F 5 HOH A 56 356 154 HOH HOH . 
F 5 HOH A 57 357 160 HOH HOH . 
F 5 HOH A 58 358 178 HOH HOH . 
F 5 HOH A 59 359 185 HOH HOH . 
F 5 HOH A 60 360 189 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               7.964 
_atom_site.Cartn_y               14.856 
_atom_site.Cartn_z               32.103 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        37.54 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           206 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#