data_5NK2 # _model_server_result.job_id 3Zd2eDfNs-PHGfcTZ7hjKw _model_server_result.datetime_utc '2024-10-19 16:50:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nk2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 5NK2 # _exptl.entry_id 5NK2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.88 _cell.angle_gamma 90 _cell.entry_id 5NK2 _cell.length_a 32.84 _cell.length_b 107.792 _cell.length_c 40.613 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NK2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 142 n n C1 C2 EDO sing 143 n n C1 H11 EDO sing 144 n n C1 H12 EDO sing 145 n n O1 HO1 EDO sing 146 n n C2 O2 EDO sing 147 n n C2 H21 EDO sing 148 n n C2 H22 EDO sing 149 n n O2 HO2 EDO sing 150 n n # _atom_sites.entry_id 5NK2 _atom_sites.fract_transf_matrix[1][1] 0.030451 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010412 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009277 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8ZZ A 1 1001 1001 8ZZ DRG . C 3 EDO A 1 1002 1002 EDO EDO . D 4 HOH A 1 1101 153 HOH HOH . D 4 HOH A 2 1102 121 HOH HOH . D 4 HOH A 3 1103 50 HOH HOH . D 4 HOH A 4 1104 122 HOH HOH . D 4 HOH A 5 1105 163 HOH HOH . D 4 HOH A 6 1106 156 HOH HOH . D 4 HOH A 7 1107 170 HOH HOH . D 4 HOH A 8 1108 155 HOH HOH . D 4 HOH A 9 1109 72 HOH HOH . D 4 HOH A 10 1110 142 HOH HOH . D 4 HOH A 11 1111 110 HOH HOH . D 4 HOH A 12 1112 88 HOH HOH . D 4 HOH A 13 1113 154 HOH HOH . D 4 HOH A 14 1114 213 HOH HOH . D 4 HOH A 15 1115 33 HOH HOH . D 4 HOH A 16 1116 49 HOH HOH . D 4 HOH A 17 1117 64 HOH HOH . D 4 HOH A 18 1118 85 HOH HOH . D 4 HOH A 19 1119 21 HOH HOH . D 4 HOH A 20 1120 6 HOH HOH . D 4 HOH A 21 1121 108 HOH HOH . D 4 HOH A 22 1122 52 HOH HOH . D 4 HOH A 23 1123 40 HOH HOH . D 4 HOH A 24 1124 34 HOH HOH . D 4 HOH A 25 1125 67 HOH HOH . D 4 HOH A 26 1126 47 HOH HOH . D 4 HOH A 27 1127 23 HOH HOH . D 4 HOH A 28 1128 12 HOH HOH . D 4 HOH A 29 1129 201 HOH HOH . D 4 HOH A 30 1130 135 HOH HOH . D 4 HOH A 31 1131 102 HOH HOH . D 4 HOH A 32 1132 75 HOH HOH . D 4 HOH A 33 1133 187 HOH HOH . D 4 HOH A 34 1134 111 HOH HOH . D 4 HOH A 35 1135 89 HOH HOH . D 4 HOH A 36 1136 53 HOH HOH . D 4 HOH A 37 1137 46 HOH HOH . D 4 HOH A 38 1138 18 HOH HOH . D 4 HOH A 39 1139 192 HOH HOH . D 4 HOH A 40 1140 42 HOH HOH . D 4 HOH A 41 1141 15 HOH HOH . D 4 HOH A 42 1142 82 HOH HOH . D 4 HOH A 43 1143 5 HOH HOH . D 4 HOH A 44 1144 66 HOH HOH . D 4 HOH A 45 1145 106 HOH HOH . D 4 HOH A 46 1146 58 HOH HOH . D 4 HOH A 47 1147 54 HOH HOH . D 4 HOH A 48 1148 22 HOH HOH . D 4 HOH A 49 1149 7 HOH HOH . D 4 HOH A 50 1150 113 HOH HOH . D 4 HOH A 51 1151 45 HOH HOH . D 4 HOH A 52 1152 41 HOH HOH . D 4 HOH A 53 1153 62 HOH HOH . D 4 HOH A 54 1154 177 HOH HOH . D 4 HOH A 55 1155 92 HOH HOH . D 4 HOH A 56 1156 56 HOH HOH . D 4 HOH A 57 1157 57 HOH HOH . D 4 HOH A 58 1158 91 HOH HOH . D 4 HOH A 59 1159 114 HOH HOH . D 4 HOH A 60 1160 70 HOH HOH . D 4 HOH A 61 1161 48 HOH HOH . D 4 HOH A 62 1162 17 HOH HOH . D 4 HOH A 63 1163 38 HOH HOH . D 4 HOH A 64 1164 26 HOH HOH . D 4 HOH A 65 1165 215 HOH HOH . D 4 HOH A 66 1166 78 HOH HOH . D 4 HOH A 67 1167 206 HOH HOH . D 4 HOH A 68 1168 25 HOH HOH . D 4 HOH A 69 1169 136 HOH HOH . D 4 HOH A 70 1170 8 HOH HOH . D 4 HOH A 71 1171 148 HOH HOH . D 4 HOH A 72 1172 203 HOH HOH . D 4 HOH A 73 1173 24 HOH HOH . D 4 HOH A 74 1174 194 HOH HOH . D 4 HOH A 75 1175 63 HOH HOH . D 4 HOH A 76 1176 9 HOH HOH . D 4 HOH A 77 1177 31 HOH HOH . D 4 HOH A 78 1178 145 HOH HOH . D 4 HOH A 79 1179 127 HOH HOH . D 4 HOH A 80 1180 60 HOH HOH . D 4 HOH A 81 1181 83 HOH HOH . D 4 HOH A 82 1182 10 HOH HOH . D 4 HOH A 83 1183 160 HOH HOH . D 4 HOH A 84 1184 79 HOH HOH . D 4 HOH A 85 1185 14 HOH HOH . D 4 HOH A 86 1186 76 HOH HOH . D 4 HOH A 87 1187 84 HOH HOH . D 4 HOH A 88 1188 119 HOH HOH . D 4 HOH A 89 1189 116 HOH HOH . D 4 HOH A 90 1190 219 HOH HOH . D 4 HOH A 91 1191 93 HOH HOH . D 4 HOH A 92 1192 35 HOH HOH . D 4 HOH A 93 1193 55 HOH HOH . D 4 HOH A 94 1194 43 HOH HOH . D 4 HOH A 95 1195 80 HOH HOH . D 4 HOH A 96 1196 109 HOH HOH . D 4 HOH A 97 1197 44 HOH HOH . D 4 HOH A 98 1198 69 HOH HOH . D 4 HOH A 99 1199 186 HOH HOH . D 4 HOH A 100 1200 73 HOH HOH . D 4 HOH A 101 1201 20 HOH HOH . D 4 HOH A 102 1202 214 HOH HOH . D 4 HOH A 103 1203 32 HOH HOH . D 4 HOH A 104 1204 16 HOH HOH . D 4 HOH A 105 1205 149 HOH HOH . D 4 HOH A 106 1206 65 HOH HOH . D 4 HOH A 107 1207 11 HOH HOH . D 4 HOH A 108 1208 210 HOH HOH . D 4 HOH A 109 1209 4 HOH HOH . D 4 HOH A 110 1210 90 HOH HOH . D 4 HOH A 111 1211 166 HOH HOH . D 4 HOH A 112 1212 29 HOH HOH . D 4 HOH A 113 1213 98 HOH HOH . D 4 HOH A 114 1214 19 HOH HOH . D 4 HOH A 115 1215 28 HOH HOH . D 4 HOH A 116 1216 2 HOH HOH . D 4 HOH A 117 1217 137 HOH HOH . D 4 HOH A 118 1218 3 HOH HOH . D 4 HOH A 119 1219 87 HOH HOH . D 4 HOH A 120 1220 71 HOH HOH . D 4 HOH A 121 1221 195 HOH HOH . D 4 HOH A 122 1222 193 HOH HOH . D 4 HOH A 123 1223 107 HOH HOH . D 4 HOH A 124 1224 141 HOH HOH . D 4 HOH A 125 1225 220 HOH HOH . D 4 HOH A 126 1226 196 HOH HOH . D 4 HOH A 127 1227 61 HOH HOH . D 4 HOH A 128 1228 157 HOH HOH . D 4 HOH A 129 1229 162 HOH HOH . D 4 HOH A 130 1230 124 HOH HOH . D 4 HOH A 131 1231 30 HOH HOH . D 4 HOH A 132 1232 13 HOH HOH . D 4 HOH A 133 1233 150 HOH HOH . D 4 HOH A 134 1234 27 HOH HOH . D 4 HOH A 135 1235 132 HOH HOH . D 4 HOH A 136 1236 68 HOH HOH . D 4 HOH A 137 1237 74 HOH HOH . D 4 HOH A 138 1238 134 HOH HOH . D 4 HOH A 139 1239 99 HOH HOH . D 4 HOH A 140 1240 218 HOH HOH . D 4 HOH A 141 1241 178 HOH HOH . D 4 HOH A 142 1242 101 HOH HOH . D 4 HOH A 143 1243 128 HOH HOH . D 4 HOH A 144 1244 51 HOH HOH . D 4 HOH A 145 1245 176 HOH HOH . D 4 HOH A 146 1246 208 HOH HOH . D 4 HOH A 147 1247 94 HOH HOH . D 4 HOH A 148 1248 125 HOH HOH . D 4 HOH A 149 1249 96 HOH HOH . D 4 HOH A 150 1250 97 HOH HOH . D 4 HOH A 151 1251 126 HOH HOH . D 4 HOH A 152 1252 129 HOH HOH . D 4 HOH A 153 1253 100 HOH HOH . D 4 HOH A 154 1254 86 HOH HOH . D 4 HOH A 155 1255 171 HOH HOH . D 4 HOH A 156 1256 188 HOH HOH . D 4 HOH A 157 1257 115 HOH HOH . D 4 HOH A 158 1258 133 HOH HOH . D 4 HOH A 159 1259 164 HOH HOH . D 4 HOH A 160 1260 191 HOH HOH . D 4 HOH A 161 1261 182 HOH HOH . D 4 HOH A 162 1262 180 HOH HOH . D 4 HOH A 163 1263 175 HOH HOH . D 4 HOH A 164 1264 77 HOH HOH . D 4 HOH A 165 1265 37 HOH HOH . D 4 HOH A 166 1266 139 HOH HOH . D 4 HOH A 167 1267 39 HOH HOH . D 4 HOH A 168 1268 212 HOH HOH . D 4 HOH A 169 1269 36 HOH HOH . D 4 HOH A 170 1270 209 HOH HOH . D 4 HOH A 171 1271 105 HOH HOH . D 4 HOH A 172 1272 199 HOH HOH . D 4 HOH A 173 1273 103 HOH HOH . D 4 HOH A 174 1274 144 HOH HOH . D 4 HOH A 175 1275 59 HOH HOH . D 4 HOH A 176 1276 168 HOH HOH . D 4 HOH A 177 1277 138 HOH HOH . D 4 HOH A 178 1278 205 HOH HOH . D 4 HOH A 179 1279 118 HOH HOH . D 4 HOH A 180 1280 120 HOH HOH . D 4 HOH A 181 1281 143 HOH HOH . D 4 HOH A 182 1282 173 HOH HOH . D 4 HOH A 183 1283 112 HOH HOH . D 4 HOH A 184 1284 158 HOH HOH . D 4 HOH A 185 1285 198 HOH HOH . D 4 HOH A 186 1286 1 HOH HOH . D 4 HOH A 187 1287 167 HOH HOH . D 4 HOH A 188 1288 117 HOH HOH . D 4 HOH A 189 1289 174 HOH HOH . D 4 HOH A 190 1290 216 HOH HOH . D 4 HOH A 191 1291 211 HOH HOH . D 4 HOH A 192 1292 161 HOH HOH . D 4 HOH A 193 1293 159 HOH HOH . D 4 HOH A 194 1294 169 HOH HOH . D 4 HOH A 195 1295 152 HOH HOH . D 4 HOH A 196 1296 104 HOH HOH . D 4 HOH A 197 1297 207 HOH HOH . D 4 HOH A 198 1298 184 HOH HOH . D 4 HOH A 199 1299 179 HOH HOH . D 4 HOH A 200 1300 140 HOH HOH . D 4 HOH A 201 1301 146 HOH HOH . D 4 HOH A 202 1302 202 HOH HOH . D 4 HOH A 203 1303 221 HOH HOH . D 4 HOH A 204 1304 165 HOH HOH . D 4 HOH A 205 1305 95 HOH HOH . D 4 HOH A 206 1306 181 HOH HOH . D 4 HOH A 207 1307 189 HOH HOH . D 4 HOH A 208 1308 183 HOH HOH . D 4 HOH A 209 1309 185 HOH HOH . D 4 HOH A 210 1310 204 HOH HOH . D 4 HOH A 211 1311 131 HOH HOH . D 4 HOH A 212 1312 200 HOH HOH . D 4 HOH A 213 1313 151 HOH HOH . D 4 HOH A 214 1314 123 HOH HOH . D 4 HOH A 215 1315 81 HOH HOH . D 4 HOH A 216 1316 130 HOH HOH . D 4 HOH A 217 1317 147 HOH HOH . D 4 HOH A 218 1318 172 HOH HOH . D 4 HOH A 219 1319 197 HOH HOH . D 4 HOH A 220 1320 217 HOH HOH . D 4 HOH A 221 1321 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 -71.42 0.507 19.04 1 11.61 ? C1 EDO 1002 A 1 HETATM 2 O O1 EDO . . . C 3 -70.035 0.874 19.147 1 12.45 ? O1 EDO 1002 A 1 HETATM 3 C C2 EDO . . . C 3 -71.777 0.431 17.555 1 11.98 ? C2 EDO 1002 A 1 HETATM 4 O O2 EDO . . . C 3 -71.985 1.772 17.065 1 13.28 ? O2 EDO 1002 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #