data_5NK3 # _model_server_result.job_id SXSv6xHTbCJz_Ap3WUzyWA _model_server_result.datetime_utc '2024-11-22 06:23:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nk3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 5NK3 # _exptl.entry_id 5NK3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 75.9 _cell.angle_beta 80.88 _cell.angle_gamma 70.53 _cell.entry_id 5NK3 _cell.length_a 32.804 _cell.length_b 40.918 _cell.length_c 52.01 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NK3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 139 n n C1 C2 EDO sing 140 n n C1 H11 EDO sing 141 n n C1 H12 EDO sing 142 n n O1 HO1 EDO sing 143 n n C2 O2 EDO sing 144 n n C2 H21 EDO sing 145 n n C2 H22 EDO sing 146 n n O2 HO2 EDO sing 147 n n # _atom_sites.entry_id 5NK3 _atom_sites.fract_transf_matrix[1][1] 0.030484 _atom_sites.fract_transf_matrix[1][2] -0.010779 _atom_sites.fract_transf_matrix[1][3] -0.002744 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025922 _atom_sites.fract_transf_matrix[2][3] -0.005427 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019896 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 92Q A 1 1001 1001 92Q 92Q . C 3 EDO A 1 1002 1002 EDO EDO . D 4 HOH A 1 1101 127 HOH HOH . D 4 HOH A 2 1102 59 HOH HOH . D 4 HOH A 3 1103 120 HOH HOH . D 4 HOH A 4 1104 32 HOH HOH . D 4 HOH A 5 1105 117 HOH HOH . D 4 HOH A 6 1106 33 HOH HOH . D 4 HOH A 7 1107 43 HOH HOH . D 4 HOH A 8 1108 18 HOH HOH . D 4 HOH A 9 1109 77 HOH HOH . D 4 HOH A 10 1110 11 HOH HOH . D 4 HOH A 11 1111 39 HOH HOH . D 4 HOH A 12 1112 106 HOH HOH . D 4 HOH A 13 1113 122 HOH HOH . D 4 HOH A 14 1114 84 HOH HOH . D 4 HOH A 15 1115 35 HOH HOH . D 4 HOH A 16 1116 28 HOH HOH . D 4 HOH A 17 1117 99 HOH HOH . D 4 HOH A 18 1118 4 HOH HOH . D 4 HOH A 19 1119 71 HOH HOH . D 4 HOH A 20 1120 9 HOH HOH . D 4 HOH A 21 1121 40 HOH HOH . D 4 HOH A 22 1122 65 HOH HOH . D 4 HOH A 23 1123 112 HOH HOH . D 4 HOH A 24 1124 26 HOH HOH . D 4 HOH A 25 1125 12 HOH HOH . D 4 HOH A 26 1126 53 HOH HOH . D 4 HOH A 27 1127 17 HOH HOH . D 4 HOH A 28 1128 10 HOH HOH . D 4 HOH A 29 1129 29 HOH HOH . D 4 HOH A 30 1130 2 HOH HOH . D 4 HOH A 31 1131 56 HOH HOH . D 4 HOH A 32 1132 118 HOH HOH . D 4 HOH A 33 1133 52 HOH HOH . D 4 HOH A 34 1134 119 HOH HOH . D 4 HOH A 35 1135 25 HOH HOH . D 4 HOH A 36 1136 49 HOH HOH . D 4 HOH A 37 1137 48 HOH HOH . D 4 HOH A 38 1138 13 HOH HOH . D 4 HOH A 39 1139 79 HOH HOH . D 4 HOH A 40 1140 89 HOH HOH . D 4 HOH A 41 1141 5 HOH HOH . D 4 HOH A 42 1142 42 HOH HOH . D 4 HOH A 43 1143 1 HOH HOH . D 4 HOH A 44 1144 38 HOH HOH . D 4 HOH A 45 1145 6 HOH HOH . D 4 HOH A 46 1146 51 HOH HOH . D 4 HOH A 47 1147 15 HOH HOH . D 4 HOH A 48 1148 47 HOH HOH . D 4 HOH A 49 1149 73 HOH HOH . D 4 HOH A 50 1150 58 HOH HOH . D 4 HOH A 51 1151 46 HOH HOH . D 4 HOH A 52 1152 61 HOH HOH . D 4 HOH A 53 1153 44 HOH HOH . D 4 HOH A 54 1154 123 HOH HOH . D 4 HOH A 55 1155 66 HOH HOH . D 4 HOH A 56 1156 8 HOH HOH . D 4 HOH A 57 1157 110 HOH HOH . D 4 HOH A 58 1158 57 HOH HOH . D 4 HOH A 59 1159 3 HOH HOH . D 4 HOH A 60 1160 36 HOH HOH . D 4 HOH A 61 1161 23 HOH HOH . D 4 HOH A 62 1162 72 HOH HOH . D 4 HOH A 63 1163 19 HOH HOH . D 4 HOH A 64 1164 54 HOH HOH . D 4 HOH A 65 1165 108 HOH HOH . D 4 HOH A 66 1166 83 HOH HOH . D 4 HOH A 67 1167 100 HOH HOH . D 4 HOH A 68 1168 105 HOH HOH . D 4 HOH A 69 1169 27 HOH HOH . D 4 HOH A 70 1170 24 HOH HOH . D 4 HOH A 71 1171 20 HOH HOH . D 4 HOH A 72 1172 97 HOH HOH . D 4 HOH A 73 1173 98 HOH HOH . D 4 HOH A 74 1174 81 HOH HOH . D 4 HOH A 75 1175 91 HOH HOH . D 4 HOH A 76 1176 14 HOH HOH . D 4 HOH A 77 1177 70 HOH HOH . D 4 HOH A 78 1178 7 HOH HOH . D 4 HOH A 79 1179 37 HOH HOH . D 4 HOH A 80 1180 55 HOH HOH . D 4 HOH A 81 1181 31 HOH HOH . D 4 HOH A 82 1182 63 HOH HOH . D 4 HOH A 83 1183 22 HOH HOH . D 4 HOH A 84 1184 45 HOH HOH . D 4 HOH A 85 1185 16 HOH HOH . D 4 HOH A 86 1186 34 HOH HOH . D 4 HOH A 87 1187 88 HOH HOH . D 4 HOH A 88 1188 80 HOH HOH . D 4 HOH A 89 1189 21 HOH HOH . D 4 HOH A 90 1190 129 HOH HOH . D 4 HOH A 91 1191 128 HOH HOH . D 4 HOH A 92 1192 76 HOH HOH . D 4 HOH A 93 1193 74 HOH HOH . D 4 HOH A 94 1194 62 HOH HOH . D 4 HOH A 95 1195 96 HOH HOH . D 4 HOH A 96 1196 30 HOH HOH . D 4 HOH A 97 1197 130 HOH HOH . D 4 HOH A 98 1198 94 HOH HOH . D 4 HOH A 99 1199 50 HOH HOH . D 4 HOH A 100 1200 125 HOH HOH . D 4 HOH A 101 1201 64 HOH HOH . D 4 HOH A 102 1202 93 HOH HOH . D 4 HOH A 103 1203 78 HOH HOH . D 4 HOH A 104 1204 60 HOH HOH . D 4 HOH A 105 1205 124 HOH HOH . D 4 HOH A 106 1206 68 HOH HOH . D 4 HOH A 107 1207 41 HOH HOH . D 4 HOH A 108 1208 103 HOH HOH . D 4 HOH A 109 1209 85 HOH HOH . D 4 HOH A 110 1210 109 HOH HOH . D 4 HOH A 111 1211 86 HOH HOH . D 4 HOH A 112 1212 67 HOH HOH . D 4 HOH A 113 1213 102 HOH HOH . D 4 HOH A 114 1214 104 HOH HOH . D 4 HOH A 115 1215 101 HOH HOH . D 4 HOH A 116 1216 126 HOH HOH . D 4 HOH A 117 1217 82 HOH HOH . D 4 HOH A 118 1218 113 HOH HOH . D 4 HOH A 119 1219 115 HOH HOH . D 4 HOH A 120 1220 111 HOH HOH . D 4 HOH A 121 1221 107 HOH HOH . D 4 HOH A 122 1222 114 HOH HOH . D 4 HOH A 123 1223 116 HOH HOH . D 4 HOH A 124 1224 90 HOH HOH . D 4 HOH A 125 1225 69 HOH HOH . D 4 HOH A 126 1226 92 HOH HOH . D 4 HOH A 127 1227 95 HOH HOH . D 4 HOH A 128 1228 75 HOH HOH . D 4 HOH A 129 1229 87 HOH HOH . D 4 HOH A 130 1230 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 112.222 46.349 -7.378 1 17.05 ? C1 EDO 1002 A 1 HETATM 2 O O1 EDO . . . C 3 110.848 46.492 -6.953 1 17.99 ? O1 EDO 1002 A 1 HETATM 3 C C2 EDO . . . C 3 112.551 44.859 -7.369 1 14.19 ? C2 EDO 1002 A 1 HETATM 4 O O2 EDO . . . C 3 112.74 44.467 -6.004 1 18.77 ? O2 EDO 1002 A 1 # _model_server_stats.io_time_ms 99 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #