data_5NKA
#
_model_server_result.job_id            28EMB1i4Ivz0KnnDlXq_jA 
_model_server_result.datetime_utc      '2025-06-25 05:55:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nka 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1002}' 
#
_entry.id    5NKA 
#
_exptl.entry_id    5NKA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.8 
_cell.angle_gamma         90 
_cell.entry_id            5NKA 
_cell.length_a            32.685 
_cell.length_b            106.041 
_cell.length_c            39.689 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NKA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 146 n n 
C1 C2 EDO sing 147 n n 
C1 H11 EDO sing 148 n n 
C1 H12 EDO sing 149 n n 
O1 HO1 EDO sing 150 n n 
C2 O2 EDO sing 151 n n 
C2 H21 EDO sing 152 n n 
C2 H22 EDO sing 153 n n 
O2 HO2 EDO sing 154 n n 
#
_atom_sites.entry_id                     5NKA 
_atom_sites.fract_transf_matrix[1][1]    0.030595 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002034 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00943 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025252 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 91H A 1 1001 1001 91H DRG . 
C 3 EDO A 1 1002 1002 EDO EDO . 
D 4 HOH A 1 1101 207 HOH HOH . 
D 4 HOH A 2 1102 198 HOH HOH . 
D 4 HOH A 3 1103 165 HOH HOH . 
D 4 HOH A 4 1104 215 HOH HOH . 
D 4 HOH A 5 1105 107 HOH HOH . 
D 4 HOH A 6 1106 108 HOH HOH . 
D 4 HOH A 7 1107 177 HOH HOH . 
D 4 HOH A 8 1108 81 HOH HOH . 
D 4 HOH A 9 1109 183 HOH HOH . 
D 4 HOH A 10 1110 123 HOH HOH . 
D 4 HOH A 11 1111 77 HOH HOH . 
D 4 HOH A 12 1112 69 HOH HOH . 
D 4 HOH A 13 1113 53 HOH HOH . 
D 4 HOH A 14 1114 125 HOH HOH . 
D 4 HOH A 15 1115 86 HOH HOH . 
D 4 HOH A 16 1116 52 HOH HOH . 
D 4 HOH A 17 1117 26 HOH HOH . 
D 4 HOH A 18 1118 104 HOH HOH . 
D 4 HOH A 19 1119 44 HOH HOH . 
D 4 HOH A 20 1120 22 HOH HOH . 
D 4 HOH A 21 1121 113 HOH HOH . 
D 4 HOH A 22 1122 49 HOH HOH . 
D 4 HOH A 23 1123 221 HOH HOH . 
D 4 HOH A 24 1124 23 HOH HOH . 
D 4 HOH A 25 1125 111 HOH HOH . 
D 4 HOH A 26 1126 92 HOH HOH . 
D 4 HOH A 27 1127 71 HOH HOH . 
D 4 HOH A 28 1128 119 HOH HOH . 
D 4 HOH A 29 1129 217 HOH HOH . 
D 4 HOH A 30 1130 150 HOH HOH . 
D 4 HOH A 31 1131 101 HOH HOH . 
D 4 HOH A 32 1132 4 HOH HOH . 
D 4 HOH A 33 1133 78 HOH HOH . 
D 4 HOH A 34 1134 10 HOH HOH . 
D 4 HOH A 35 1135 72 HOH HOH . 
D 4 HOH A 36 1136 45 HOH HOH . 
D 4 HOH A 37 1137 7 HOH HOH . 
D 4 HOH A 38 1138 36 HOH HOH . 
D 4 HOH A 39 1139 64 HOH HOH . 
D 4 HOH A 40 1140 6 HOH HOH . 
D 4 HOH A 41 1141 226 HOH HOH . 
D 4 HOH A 42 1142 73 HOH HOH . 
D 4 HOH A 43 1143 106 HOH HOH . 
D 4 HOH A 44 1144 32 HOH HOH . 
D 4 HOH A 45 1145 157 HOH HOH . 
D 4 HOH A 46 1146 163 HOH HOH . 
D 4 HOH A 47 1147 17 HOH HOH . 
D 4 HOH A 48 1148 9 HOH HOH . 
D 4 HOH A 49 1149 41 HOH HOH . 
D 4 HOH A 50 1150 12 HOH HOH . 
D 4 HOH A 51 1151 54 HOH HOH . 
D 4 HOH A 52 1152 21 HOH HOH . 
D 4 HOH A 53 1153 57 HOH HOH . 
D 4 HOH A 54 1154 65 HOH HOH . 
D 4 HOH A 55 1155 46 HOH HOH . 
D 4 HOH A 56 1156 25 HOH HOH . 
D 4 HOH A 57 1157 1 HOH HOH . 
D 4 HOH A 58 1158 114 HOH HOH . 
D 4 HOH A 59 1159 70 HOH HOH . 
D 4 HOH A 60 1160 40 HOH HOH . 
D 4 HOH A 61 1161 109 HOH HOH . 
D 4 HOH A 62 1162 133 HOH HOH . 
D 4 HOH A 63 1163 187 HOH HOH . 
D 4 HOH A 64 1164 35 HOH HOH . 
D 4 HOH A 65 1165 96 HOH HOH . 
D 4 HOH A 66 1166 160 HOH HOH . 
D 4 HOH A 67 1167 59 HOH HOH . 
D 4 HOH A 68 1168 214 HOH HOH . 
D 4 HOH A 69 1169 11 HOH HOH . 
D 4 HOH A 70 1170 83 HOH HOH . 
D 4 HOH A 71 1171 14 HOH HOH . 
D 4 HOH A 72 1172 118 HOH HOH . 
D 4 HOH A 73 1173 50 HOH HOH . 
D 4 HOH A 74 1174 218 HOH HOH . 
D 4 HOH A 75 1175 37 HOH HOH . 
D 4 HOH A 76 1176 192 HOH HOH . 
D 4 HOH A 77 1177 55 HOH HOH . 
D 4 HOH A 78 1178 42 HOH HOH . 
D 4 HOH A 79 1179 38 HOH HOH . 
D 4 HOH A 80 1180 19 HOH HOH . 
D 4 HOH A 81 1181 28 HOH HOH . 
D 4 HOH A 82 1182 117 HOH HOH . 
D 4 HOH A 83 1183 8 HOH HOH . 
D 4 HOH A 84 1184 210 HOH HOH . 
D 4 HOH A 85 1185 220 HOH HOH . 
D 4 HOH A 86 1186 60 HOH HOH . 
D 4 HOH A 87 1187 99 HOH HOH . 
D 4 HOH A 88 1188 58 HOH HOH . 
D 4 HOH A 89 1189 103 HOH HOH . 
D 4 HOH A 90 1190 20 HOH HOH . 
D 4 HOH A 91 1191 121 HOH HOH . 
D 4 HOH A 92 1192 134 HOH HOH . 
D 4 HOH A 93 1193 88 HOH HOH . 
D 4 HOH A 94 1194 132 HOH HOH . 
D 4 HOH A 95 1195 222 HOH HOH . 
D 4 HOH A 96 1196 147 HOH HOH . 
D 4 HOH A 97 1197 68 HOH HOH . 
D 4 HOH A 98 1198 171 HOH HOH . 
D 4 HOH A 99 1199 63 HOH HOH . 
D 4 HOH A 100 1200 93 HOH HOH . 
D 4 HOH A 101 1201 195 HOH HOH . 
D 4 HOH A 102 1202 90 HOH HOH . 
D 4 HOH A 103 1203 87 HOH HOH . 
D 4 HOH A 104 1204 3 HOH HOH . 
D 4 HOH A 105 1205 142 HOH HOH . 
D 4 HOH A 106 1206 18 HOH HOH . 
D 4 HOH A 107 1207 209 HOH HOH . 
D 4 HOH A 108 1208 24 HOH HOH . 
D 4 HOH A 109 1209 100 HOH HOH . 
D 4 HOH A 110 1210 27 HOH HOH . 
D 4 HOH A 111 1211 97 HOH HOH . 
D 4 HOH A 112 1212 105 HOH HOH . 
D 4 HOH A 113 1213 138 HOH HOH . 
D 4 HOH A 114 1214 74 HOH HOH . 
D 4 HOH A 115 1215 122 HOH HOH . 
D 4 HOH A 116 1216 181 HOH HOH . 
D 4 HOH A 117 1217 202 HOH HOH . 
D 4 HOH A 118 1218 75 HOH HOH . 
D 4 HOH A 119 1219 136 HOH HOH . 
D 4 HOH A 120 1220 31 HOH HOH . 
D 4 HOH A 121 1221 127 HOH HOH . 
D 4 HOH A 122 1222 162 HOH HOH . 
D 4 HOH A 123 1223 82 HOH HOH . 
D 4 HOH A 124 1224 2 HOH HOH . 
D 4 HOH A 125 1225 91 HOH HOH . 
D 4 HOH A 126 1226 16 HOH HOH . 
D 4 HOH A 127 1227 115 HOH HOH . 
D 4 HOH A 128 1228 47 HOH HOH . 
D 4 HOH A 129 1229 33 HOH HOH . 
D 4 HOH A 130 1230 211 HOH HOH . 
D 4 HOH A 131 1231 197 HOH HOH . 
D 4 HOH A 132 1232 5 HOH HOH . 
D 4 HOH A 133 1233 176 HOH HOH . 
D 4 HOH A 134 1234 164 HOH HOH . 
D 4 HOH A 135 1235 148 HOH HOH . 
D 4 HOH A 136 1236 79 HOH HOH . 
D 4 HOH A 137 1237 30 HOH HOH . 
D 4 HOH A 138 1238 39 HOH HOH . 
D 4 HOH A 139 1239 13 HOH HOH . 
D 4 HOH A 140 1240 170 HOH HOH . 
D 4 HOH A 141 1241 43 HOH HOH . 
D 4 HOH A 142 1242 51 HOH HOH . 
D 4 HOH A 143 1243 61 HOH HOH . 
D 4 HOH A 144 1244 149 HOH HOH . 
D 4 HOH A 145 1245 180 HOH HOH . 
D 4 HOH A 146 1246 66 HOH HOH . 
D 4 HOH A 147 1247 144 HOH HOH . 
D 4 HOH A 148 1248 224 HOH HOH . 
D 4 HOH A 149 1249 112 HOH HOH . 
D 4 HOH A 150 1250 80 HOH HOH . 
D 4 HOH A 151 1251 188 HOH HOH . 
D 4 HOH A 152 1252 62 HOH HOH . 
D 4 HOH A 153 1253 190 HOH HOH . 
D 4 HOH A 154 1254 29 HOH HOH . 
D 4 HOH A 155 1255 56 HOH HOH . 
D 4 HOH A 156 1256 94 HOH HOH . 
D 4 HOH A 157 1257 76 HOH HOH . 
D 4 HOH A 158 1258 48 HOH HOH . 
D 4 HOH A 159 1259 131 HOH HOH . 
D 4 HOH A 160 1260 213 HOH HOH . 
D 4 HOH A 161 1261 95 HOH HOH . 
D 4 HOH A 162 1262 120 HOH HOH . 
D 4 HOH A 163 1263 145 HOH HOH . 
D 4 HOH A 164 1264 34 HOH HOH . 
D 4 HOH A 165 1265 191 HOH HOH . 
D 4 HOH A 166 1266 102 HOH HOH . 
D 4 HOH A 167 1267 204 HOH HOH . 
D 4 HOH A 168 1268 67 HOH HOH . 
D 4 HOH A 169 1269 175 HOH HOH . 
D 4 HOH A 170 1270 89 HOH HOH . 
D 4 HOH A 171 1271 223 HOH HOH . 
D 4 HOH A 172 1272 129 HOH HOH . 
D 4 HOH A 173 1273 126 HOH HOH . 
D 4 HOH A 174 1274 116 HOH HOH . 
D 4 HOH A 175 1275 179 HOH HOH . 
D 4 HOH A 176 1276 110 HOH HOH . 
D 4 HOH A 177 1277 155 HOH HOH . 
D 4 HOH A 178 1278 206 HOH HOH . 
D 4 HOH A 179 1279 135 HOH HOH . 
D 4 HOH A 180 1280 15 HOH HOH . 
D 4 HOH A 181 1281 184 HOH HOH . 
D 4 HOH A 182 1282 200 HOH HOH . 
D 4 HOH A 183 1283 201 HOH HOH . 
D 4 HOH A 184 1284 158 HOH HOH . 
D 4 HOH A 185 1285 205 HOH HOH . 
D 4 HOH A 186 1286 219 HOH HOH . 
D 4 HOH A 187 1287 161 HOH HOH . 
D 4 HOH A 188 1288 203 HOH HOH . 
D 4 HOH A 189 1289 212 HOH HOH . 
D 4 HOH A 190 1290 166 HOH HOH . 
D 4 HOH A 191 1291 196 HOH HOH . 
D 4 HOH A 192 1292 128 HOH HOH . 
D 4 HOH A 193 1293 173 HOH HOH . 
D 4 HOH A 194 1294 199 HOH HOH . 
D 4 HOH A 195 1295 227 HOH HOH . 
D 4 HOH A 196 1296 137 HOH HOH . 
D 4 HOH A 197 1297 168 HOH HOH . 
D 4 HOH A 198 1298 146 HOH HOH . 
D 4 HOH A 199 1299 153 HOH HOH . 
D 4 HOH A 200 1300 225 HOH HOH . 
D 4 HOH A 201 1301 167 HOH HOH . 
D 4 HOH A 202 1302 194 HOH HOH . 
D 4 HOH A 203 1303 182 HOH HOH . 
D 4 HOH A 204 1304 216 HOH HOH . 
D 4 HOH A 205 1305 185 HOH HOH . 
D 4 HOH A 206 1306 154 HOH HOH . 
D 4 HOH A 207 1307 151 HOH HOH . 
D 4 HOH A 208 1308 98 HOH HOH . 
D 4 HOH A 209 1309 208 HOH HOH . 
D 4 HOH A 210 1310 178 HOH HOH . 
D 4 HOH A 211 1311 141 HOH HOH . 
D 4 HOH A 212 1312 169 HOH HOH . 
D 4 HOH A 213 1313 130 HOH HOH . 
D 4 HOH A 214 1314 186 HOH HOH . 
D 4 HOH A 215 1315 152 HOH HOH . 
D 4 HOH A 216 1316 85 HOH HOH . 
D 4 HOH A 217 1317 84 HOH HOH . 
D 4 HOH A 218 1318 193 HOH HOH . 
D 4 HOH A 219 1319 159 HOH HOH . 
D 4 HOH A 220 1320 174 HOH HOH . 
D 4 HOH A 221 1321 156 HOH HOH . 
D 4 HOH A 222 1322 143 HOH HOH . 
D 4 HOH A 223 1323 189 HOH HOH . 
D 4 HOH A 224 1324 139 HOH HOH . 
D 4 HOH A 225 1325 124 HOH HOH . 
D 4 HOH A 226 1326 140 HOH HOH . 
D 4 HOH A 227 1327 172 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 112.944 -2.149 18.757 1 12.62 ? C1 EDO 1002 A 1 
HETATM 2 O O1 EDO . . . C 3 111.541 -2.491 18.859 1 13.66 ? O1 EDO 1002 A 1 
HETATM 3 C C2 EDO . . . C 3 113.291 -2.007 17.258 1 13.9 ? C2 EDO 1002 A 1 
HETATM 4 O O2 EDO . . . C 3 113.395 -3.268 16.665 1 13.81 ? O2 EDO 1002 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#