data_5NKN # _model_server_result.job_id WtYbyxkqfgA3ii1kj3kJTw _model_server_result.datetime_utc '2024-11-22 15:37:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nkn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5NKN # _exptl.entry_id 5NKN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 399.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NKN _cell.length_a 46.68 _cell.length_b 46.68 _cell.length_c 136.85 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NKN _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 72 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 76 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 171 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 175 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.06 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C22 H25 N O6' _chem_comp.formula_weight 399.437 _chem_comp.id LOC _chem_comp.mon_nstd_flag . _chem_comp.name N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms COLCHICINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C12 LOC doub 194 n n C12 C13 LOC sing 195 n n C12 N1 LOC sing 196 n n N1 C11 LOC sing 197 n n C11 C14 LOC sing 198 n n C11 C10 LOC sing 199 n n C14 C15 LOC doub 200 n n C14 C21 LOC sing 201 n n C15 C16 LOC sing 202 n n C10 C9 LOC sing 203 n n C9 C8 LOC sing 204 n n C8 C7 LOC doub 205 n y C8 C22 LOC sing 206 n y C7 C5 LOC sing 207 n y C5 C3 LOC doub 208 n y C5 O3 LOC sing 209 n n C3 C1 LOC sing 210 n y C3 O2 LOC sing 211 n n C1 O1 LOC sing 212 n n C1 C22 LOC doub 213 n y O1 C2 LOC sing 214 n n O2 C4 LOC sing 215 n n O3 C6 LOC sing 216 n n C22 C21 LOC sing 217 n n C21 C20 LOC doub 218 n n C20 C19 LOC sing 219 n n C19 C17 LOC doub 220 n n C17 C16 LOC sing 221 n n C17 O6 LOC sing 222 n n C16 O5 LOC doub 223 n n O6 C18 LOC sing 224 n n C13 H13 LOC sing 225 n n C13 H13A LOC sing 226 n n C13 H13B LOC sing 227 n n N1 HN1 LOC sing 228 n n C11 H11 LOC sing 229 n n C15 H15 LOC sing 230 n n C10 H10 LOC sing 231 n n C10 H10A LOC sing 232 n n C9 H9 LOC sing 233 n n C9 H9A LOC sing 234 n n C7 H7 LOC sing 235 n n C2 H2 LOC sing 236 n n C2 H2A LOC sing 237 n n C2 H2B LOC sing 238 n n C4 H4 LOC sing 239 n n C4 H4A LOC sing 240 n n C4 H4B LOC sing 241 n n C6 H6 LOC sing 242 n n C6 H6A LOC sing 243 n n C6 H6B LOC sing 244 n n C20 H20 LOC sing 245 n n C19 H19 LOC sing 246 n n C18 H18 LOC sing 247 n n C18 H18A LOC sing 248 n n C18 H18B LOC sing 249 n n # _atom_sites.entry_id 5NKN _atom_sites.fract_transf_matrix[1][1] 0.021423 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021423 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007307 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LOC A 1 201 1 LOC LOC . C 3 HOH A 1 301 6 HOH HOH . C 3 HOH A 2 302 24 HOH HOH . C 3 HOH A 3 303 1 HOH HOH . C 3 HOH A 4 304 19 HOH HOH . C 3 HOH A 5 305 8 HOH HOH . C 3 HOH A 6 306 10 HOH HOH . C 3 HOH A 7 307 18 HOH HOH . C 3 HOH A 8 308 2 HOH HOH . C 3 HOH A 9 309 28 HOH HOH . C 3 HOH A 10 310 20 HOH HOH . C 3 HOH A 11 311 15 HOH HOH . C 3 HOH A 12 312 9 HOH HOH . C 3 HOH A 13 313 4 HOH HOH . C 3 HOH A 14 314 3 HOH HOH . C 3 HOH A 15 315 17 HOH HOH . C 3 HOH A 16 316 36 HOH HOH . C 3 HOH A 17 317 11 HOH HOH . C 3 HOH A 18 318 5 HOH HOH . C 3 HOH A 19 319 21 HOH HOH . C 3 HOH A 20 320 12 HOH HOH . C 3 HOH A 21 321 22 HOH HOH . C 3 HOH A 22 322 14 HOH HOH . C 3 HOH A 23 323 7 HOH HOH . C 3 HOH A 24 324 33 HOH HOH . C 3 HOH A 25 325 23 HOH HOH . C 3 HOH A 26 326 16 HOH HOH . C 3 HOH A 27 327 27 HOH HOH . C 3 HOH A 28 328 32 HOH HOH . C 3 HOH A 29 329 13 HOH HOH . C 3 HOH A 30 330 26 HOH HOH . C 3 HOH A 31 331 30 HOH HOH . C 3 HOH A 32 332 34 HOH HOH . C 3 HOH A 33 333 31 HOH HOH . C 3 HOH A 34 334 35 HOH HOH . C 3 HOH A 35 335 25 HOH HOH . C 3 HOH A 36 336 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 LOC . . . B 2 -9.207 15.718 -23.258 1 30.3 ? O4 LOC 201 A 1 HETATM 2 C C12 LOC . . . B 2 -10.071 16.437 -23.743 1 33.71 ? C12 LOC 201 A 1 HETATM 3 C C13 LOC . . . B 2 -9.862 17.108 -25.069 1 33.9 ? C13 LOC 201 A 1 HETATM 4 N N1 LOC . . . B 2 -11.246 16.687 -23.151 1 28.54 ? N1 LOC 201 A 1 HETATM 5 C C11 LOC . . . B 2 -11.622 16.092 -21.871 1 29.83 ? C11 LOC 201 A 1 HETATM 6 C C14 LOC . . . B 2 -12.229 14.709 -21.962 1 25.17 ? C14 LOC 201 A 1 HETATM 7 C C15 LOC . . . B 2 -12.877 14.409 -23.101 1 29.78 ? C15 LOC 201 A 1 HETATM 8 C C10 LOC . . . B 2 -12.593 16.996 -21.106 1 23.38 ? C10 LOC 201 A 1 HETATM 9 C C9 LOC . . . B 2 -12.957 16.498 -19.7 1 23.97 ? C9 LOC 201 A 1 HETATM 10 C C8 LOC . . . B 2 -11.852 15.726 -19 1 22.49 ? C8 LOC 201 A 1 HETATM 11 C C7 LOC . . . B 2 -11.254 16.247 -17.843 1 21.7 ? C7 LOC 201 A 1 HETATM 12 C C5 LOC . . . B 2 -10.226 15.578 -17.162 1 19.27 ? C5 LOC 201 A 1 HETATM 13 C C3 LOC . . . B 2 -9.747 14.273 -17.654 1 19.54 ? C3 LOC 201 A 1 HETATM 14 C C1 LOC . . . B 2 -10.348 13.675 -18.855 1 21.13 ? C1 LOC 201 A 1 HETATM 15 O O1 LOC . . . B 2 -9.883 12.472 -19.296 1 22.44 ? O1 LOC 201 A 1 HETATM 16 C C2 LOC . . . B 2 -8.727 12.457 -20.135 1 19.98 ? C2 LOC 201 A 1 HETATM 17 O O2 LOC . . . B 2 -8.775 13.595 -16.98 1 19.8 ? O2 LOC 201 A 1 HETATM 18 C C4 LOC . . . B 2 -9.202 12.609 -16.045 1 15.97 ? C4 LOC 201 A 1 HETATM 19 O O3 LOC . . . B 2 -9.613 16.052 -16.025 1 17.68 ? O3 LOC 201 A 1 HETATM 20 C C6 LOC . . . B 2 -9.827 17.351 -15.473 1 21.03 ? C6 LOC 201 A 1 HETATM 21 C C22 LOC . . . B 2 -11.418 14.416 -19.56 1 20.44 ? C22 LOC 201 A 1 HETATM 22 C C21 LOC . . . B 2 -12.091 13.859 -20.781 1 20.87 ? C21 LOC 201 A 1 HETATM 23 C C20 LOC . . . B 2 -12.594 12.632 -20.588 1 23.34 ? C20 LOC 201 A 1 HETATM 24 C C19 LOC . . . B 2 -13.318 11.753 -21.481 1 27.5 ? C19 LOC 201 A 1 HETATM 25 C C17 LOC . . . B 2 -13.736 11.964 -22.728 1 25.05 ? C17 LOC 201 A 1 HETATM 26 C C16 LOC . . . B 2 -13.569 13.177 -23.494 1 27.54 ? C16 LOC 201 A 1 HETATM 27 O O5 LOC . . . B 2 -14.079 13.196 -24.604 1 37.22 ? O5 LOC 201 A 1 HETATM 28 O O6 LOC . . . B 2 -14.455 10.901 -23.421 1 32.16 ? O6 LOC 201 A 1 HETATM 29 C C18 LOC . . . B 2 -14.375 9.508 -23.098 1 41.04 ? C18 LOC 201 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 29 #