data_5NKQ # _model_server_result.job_id iP62d82vOcifwhu3mn64OQ _model_server_result.datetime_utc '2025-01-09 02:04:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nkq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":203}' # _entry.id 5NKQ # _exptl.entry_id 5NKQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 18.998 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLUORIDE ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 109.41 _cell.angle_beta 101.4 _cell.angle_gamma 101.37 _cell.entry_id 5NKQ _cell.length_a 40.59 _cell.length_b 84.06 _cell.length_c 85.96 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NKQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,H,I,J,K,L,M,S,T,X,Z 1 1 C,D,E,G,N,O,P,Q,R,U,V,W,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 77 A GLY 77 1_555 I NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc2 A O THR 80 A THR 80 1_555 I NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc3 I NA NA . A NA 201 1_555 B O GLY 77 B GLY 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc4 I NA NA . A NA 201 1_555 B O THR 80 B THR 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc5 C O GLY 77 C GLY 77 1_555 N NA NA . C NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc6 C O THR 80 C THR 80 1_555 N NA NA . C NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc7 N NA NA . C NA 201 1_555 D O GLY 77 D GLY 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc8 N NA NA . C NA 201 1_555 D O THR 80 D THR 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? # _chem_comp.formula 'F -1' _chem_comp.formula_weight 18.998 _chem_comp.id F _chem_comp.mon_nstd_flag . _chem_comp.name 'FLUORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5NKQ _atom_sites.fract_transf_matrix[1][1] 0.024637 _atom_sites.fract_transf_matrix[1][2] 0.004954 _atom_sites.fract_transf_matrix[1][3] 0.007461 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012134 _atom_sites.fract_transf_matrix[2][3] 0.005083 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012866 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 NA A 1 201 2 NA NA . J 4 F A 1 202 6 F F . K 4 F A 1 203 8 F F . L 4 F B 1 201 5 F F . M 4 F B 1 202 7 F F . N 3 NA C 1 201 1 NA NA . O 4 F C 1 202 2 F F . P 4 F C 1 203 3 F F . Q 4 F C 1 204 4 F F . R 4 F D 1 201 1 F F . S 5 HOH A 1 301 201 HOH HOH . S 5 HOH A 2 302 151 HOH HOH . S 5 HOH A 3 303 186 HOH HOH . S 5 HOH A 4 304 143 HOH HOH . S 5 HOH A 5 305 260 HOH HOH . S 5 HOH A 6 306 132 HOH HOH . S 5 HOH A 7 307 213 HOH HOH . S 5 HOH A 8 308 99 HOH HOH . S 5 HOH A 9 309 133 HOH HOH . S 5 HOH A 10 310 100 HOH HOH . S 5 HOH A 11 311 23 HOH HOH . S 5 HOH A 12 312 191 HOH HOH . S 5 HOH A 13 313 92 HOH HOH . S 5 HOH A 14 314 12 HOH HOH . S 5 HOH A 15 315 71 HOH HOH . S 5 HOH A 16 316 21 HOH HOH . S 5 HOH A 17 317 226 HOH HOH . S 5 HOH A 18 318 173 HOH HOH . S 5 HOH A 19 319 114 HOH HOH . S 5 HOH A 20 320 103 HOH HOH . S 5 HOH A 21 321 141 HOH HOH . S 5 HOH A 22 322 279 HOH HOH . S 5 HOH A 23 323 238 HOH HOH . S 5 HOH A 24 324 91 HOH HOH . S 5 HOH A 25 325 227 HOH HOH . S 5 HOH A 26 326 199 HOH HOH . S 5 HOH A 27 327 229 HOH HOH . S 5 HOH A 28 328 250 HOH HOH . S 5 HOH A 29 329 224 HOH HOH . S 5 HOH A 30 330 157 HOH HOH . S 5 HOH A 31 331 267 HOH HOH . S 5 HOH A 32 332 265 HOH HOH . S 5 HOH A 33 333 248 HOH HOH . S 5 HOH A 34 334 156 HOH HOH . S 5 HOH A 35 335 236 HOH HOH . S 5 HOH A 36 336 163 HOH HOH . S 5 HOH A 37 337 233 HOH HOH . T 5 HOH B 1 301 53 HOH HOH . T 5 HOH B 2 302 216 HOH HOH . T 5 HOH B 3 303 66 HOH HOH . T 5 HOH B 4 304 95 HOH HOH . T 5 HOH B 5 305 57 HOH HOH . T 5 HOH B 6 306 74 HOH HOH . T 5 HOH B 7 307 68 HOH HOH . T 5 HOH B 8 308 79 HOH HOH . T 5 HOH B 9 309 19 HOH HOH . T 5 HOH B 10 310 37 HOH HOH . T 5 HOH B 11 311 70 HOH HOH . T 5 HOH B 12 312 8 HOH HOH . T 5 HOH B 13 313 89 HOH HOH . T 5 HOH B 14 314 36 HOH HOH . T 5 HOH B 15 315 39 HOH HOH . T 5 HOH B 16 316 160 HOH HOH . T 5 HOH B 17 317 188 HOH HOH . T 5 HOH B 18 318 228 HOH HOH . T 5 HOH B 19 319 190 HOH HOH . T 5 HOH B 20 320 252 HOH HOH . T 5 HOH B 21 321 208 HOH HOH . T 5 HOH B 22 322 170 HOH HOH . T 5 HOH B 23 323 177 HOH HOH . T 5 HOH B 24 324 169 HOH HOH . T 5 HOH B 25 325 225 HOH HOH . T 5 HOH B 26 326 166 HOH HOH . T 5 HOH B 27 327 220 HOH HOH . T 5 HOH B 28 328 240 HOH HOH . T 5 HOH B 29 329 197 HOH HOH . T 5 HOH B 30 330 181 HOH HOH . T 5 HOH B 31 331 200 HOH HOH . U 5 HOH C 1 301 121 HOH HOH . U 5 HOH C 2 302 98 HOH HOH . U 5 HOH C 3 303 51 HOH HOH . U 5 HOH C 4 304 104 HOH HOH . U 5 HOH C 5 305 149 HOH HOH . U 5 HOH C 6 306 108 HOH HOH . U 5 HOH C 7 307 59 HOH HOH . U 5 HOH C 8 308 164 HOH HOH . U 5 HOH C 9 309 3 HOH HOH . U 5 HOH C 10 310 88 HOH HOH . U 5 HOH C 11 311 211 HOH HOH . U 5 HOH C 12 312 241 HOH HOH . U 5 HOH C 13 313 61 HOH HOH . U 5 HOH C 14 314 147 HOH HOH . U 5 HOH C 15 315 183 HOH HOH . U 5 HOH C 16 316 171 HOH HOH . U 5 HOH C 17 317 259 HOH HOH . U 5 HOH C 18 318 187 HOH HOH . U 5 HOH C 19 319 135 HOH HOH . U 5 HOH C 20 320 136 HOH HOH . U 5 HOH C 21 321 184 HOH HOH . U 5 HOH C 22 322 202 HOH HOH . U 5 HOH C 23 323 140 HOH HOH . U 5 HOH C 24 324 172 HOH HOH . U 5 HOH C 25 325 264 HOH HOH . U 5 HOH C 26 326 138 HOH HOH . V 5 HOH D 1 301 249 HOH HOH . V 5 HOH D 2 302 25 HOH HOH . V 5 HOH D 3 303 4 HOH HOH . V 5 HOH D 4 304 22 HOH HOH . V 5 HOH D 5 305 244 HOH HOH . V 5 HOH D 6 306 161 HOH HOH . V 5 HOH D 7 307 131 HOH HOH . V 5 HOH D 8 308 64 HOH HOH . V 5 HOH D 9 309 112 HOH HOH . V 5 HOH D 10 310 16 HOH HOH . V 5 HOH D 11 311 14 HOH HOH . V 5 HOH D 12 312 146 HOH HOH . V 5 HOH D 13 313 32 HOH HOH . V 5 HOH D 14 314 47 HOH HOH . V 5 HOH D 15 315 38 HOH HOH . V 5 HOH D 16 316 41 HOH HOH . V 5 HOH D 17 317 210 HOH HOH . V 5 HOH D 18 318 258 HOH HOH . V 5 HOH D 19 319 116 HOH HOH . V 5 HOH D 20 320 118 HOH HOH . V 5 HOH D 21 321 110 HOH HOH . V 5 HOH D 22 322 214 HOH HOH . V 5 HOH D 23 323 106 HOH HOH . V 5 HOH D 24 324 221 HOH HOH . V 5 HOH D 25 325 222 HOH HOH . V 5 HOH D 26 326 255 HOH HOH . V 5 HOH D 27 327 223 HOH HOH . V 5 HOH D 28 328 254 HOH HOH . W 5 HOH E 1 101 167 HOH HOH . W 5 HOH E 2 102 124 HOH HOH . W 5 HOH E 3 103 130 HOH HOH . W 5 HOH E 4 104 84 HOH HOH . W 5 HOH E 5 105 261 HOH HOH . W 5 HOH E 6 106 102 HOH HOH . W 5 HOH E 7 107 54 HOH HOH . W 5 HOH E 8 108 1 HOH HOH . W 5 HOH E 9 109 24 HOH HOH . W 5 HOH E 10 110 256 HOH HOH . W 5 HOH E 11 111 271 HOH HOH . W 5 HOH E 12 112 194 HOH HOH . W 5 HOH E 13 113 42 HOH HOH . W 5 HOH E 14 114 232 HOH HOH . W 5 HOH E 15 115 262 HOH HOH . W 5 HOH E 16 116 127 HOH HOH . W 5 HOH E 17 117 63 HOH HOH . W 5 HOH E 18 118 185 HOH HOH . W 5 HOH E 19 119 87 HOH HOH . W 5 HOH E 20 120 268 HOH HOH . W 5 HOH E 21 121 162 HOH HOH . W 5 HOH E 22 122 155 HOH HOH . X 5 HOH F 1 101 251 HOH HOH . X 5 HOH F 2 102 113 HOH HOH . X 5 HOH F 3 103 69 HOH HOH . X 5 HOH F 4 104 52 HOH HOH . X 5 HOH F 5 105 72 HOH HOH . X 5 HOH F 6 106 93 HOH HOH . X 5 HOH F 7 107 101 HOH HOH . X 5 HOH F 8 108 46 HOH HOH . X 5 HOH F 9 109 43 HOH HOH . X 5 HOH F 10 110 56 HOH HOH . X 5 HOH F 11 111 273 HOH HOH . X 5 HOH F 12 112 60 HOH HOH . X 5 HOH F 13 113 153 HOH HOH . X 5 HOH F 14 114 31 HOH HOH . X 5 HOH F 15 115 62 HOH HOH . X 5 HOH F 16 116 150 HOH HOH . X 5 HOH F 17 117 235 HOH HOH . X 5 HOH F 18 118 270 HOH HOH . X 5 HOH F 19 119 178 HOH HOH . X 5 HOH F 20 120 123 HOH HOH . X 5 HOH F 21 121 30 HOH HOH . X 5 HOH F 22 122 129 HOH HOH . X 5 HOH F 23 123 247 HOH HOH . X 5 HOH F 24 124 278 HOH HOH . X 5 HOH F 25 125 239 HOH HOH . X 5 HOH F 26 126 242 HOH HOH . Y 5 HOH G 1 101 111 HOH HOH . Y 5 HOH G 2 102 122 HOH HOH . Y 5 HOH G 3 103 245 HOH HOH . Y 5 HOH G 4 104 109 HOH HOH . Y 5 HOH G 5 105 243 HOH HOH . Y 5 HOH G 6 106 5 HOH HOH . Y 5 HOH G 7 107 2 HOH HOH . Y 5 HOH G 8 108 20 HOH HOH . Y 5 HOH G 9 109 9 HOH HOH . Y 5 HOH G 10 110 83 HOH HOH . Y 5 HOH G 11 111 195 HOH HOH . Y 5 HOH G 12 112 75 HOH HOH . Y 5 HOH G 13 113 158 HOH HOH . Y 5 HOH G 14 114 6 HOH HOH . Y 5 HOH G 15 115 73 HOH HOH . Y 5 HOH G 16 116 49 HOH HOH . Y 5 HOH G 17 117 40 HOH HOH . Y 5 HOH G 18 118 18 HOH HOH . Y 5 HOH G 19 119 148 HOH HOH . Y 5 HOH G 20 120 17 HOH HOH . Y 5 HOH G 21 121 81 HOH HOH . Y 5 HOH G 22 122 15 HOH HOH . Y 5 HOH G 23 123 94 HOH HOH . Y 5 HOH G 24 124 48 HOH HOH . Y 5 HOH G 25 125 11 HOH HOH . Y 5 HOH G 26 126 10 HOH HOH . Y 5 HOH G 27 127 97 HOH HOH . Y 5 HOH G 28 128 217 HOH HOH . Y 5 HOH G 29 129 58 HOH HOH . Y 5 HOH G 30 130 126 HOH HOH . Y 5 HOH G 31 131 139 HOH HOH . Y 5 HOH G 32 132 120 HOH HOH . Y 5 HOH G 33 133 82 HOH HOH . Y 5 HOH G 34 134 192 HOH HOH . Y 5 HOH G 35 135 193 HOH HOH . Y 5 HOH G 36 136 90 HOH HOH . Y 5 HOH G 37 137 80 HOH HOH . Y 5 HOH G 38 138 207 HOH HOH . Y 5 HOH G 39 139 182 HOH HOH . Y 5 HOH G 40 140 154 HOH HOH . Y 5 HOH G 41 141 237 HOH HOH . Y 5 HOH G 42 142 105 HOH HOH . Y 5 HOH G 43 143 180 HOH HOH . Y 5 HOH G 44 144 196 HOH HOH . Y 5 HOH G 45 145 78 HOH HOH . Y 5 HOH G 46 146 119 HOH HOH . Y 5 HOH G 47 147 86 HOH HOH . Y 5 HOH G 48 148 212 HOH HOH . Y 5 HOH G 49 149 174 HOH HOH . Y 5 HOH G 50 150 168 HOH HOH . Y 5 HOH G 51 151 274 HOH HOH . Y 5 HOH G 52 152 203 HOH HOH . Y 5 HOH G 53 153 218 HOH HOH . Y 5 HOH G 54 154 179 HOH HOH . Y 5 HOH G 55 155 96 HOH HOH . Y 5 HOH G 56 156 230 HOH HOH . Z 5 HOH H 1 101 231 HOH HOH . Z 5 HOH H 2 102 55 HOH HOH . Z 5 HOH H 3 103 276 HOH HOH . Z 5 HOH H 4 104 13 HOH HOH . Z 5 HOH H 5 105 7 HOH HOH . Z 5 HOH H 6 106 175 HOH HOH . Z 5 HOH H 7 107 263 HOH HOH . Z 5 HOH H 8 108 107 HOH HOH . Z 5 HOH H 9 109 50 HOH HOH . Z 5 HOH H 10 110 26 HOH HOH . Z 5 HOH H 11 111 253 HOH HOH . Z 5 HOH H 12 112 246 HOH HOH . Z 5 HOH H 13 113 115 HOH HOH . Z 5 HOH H 14 114 275 HOH HOH . Z 5 HOH H 15 115 65 HOH HOH . Z 5 HOH H 16 116 145 HOH HOH . Z 5 HOH H 17 117 67 HOH HOH . Z 5 HOH H 18 118 33 HOH HOH . Z 5 HOH H 19 119 144 HOH HOH . Z 5 HOH H 20 120 128 HOH HOH . Z 5 HOH H 21 121 269 HOH HOH . Z 5 HOH H 22 122 117 HOH HOH . Z 5 HOH H 23 123 35 HOH HOH . Z 5 HOH H 24 124 209 HOH HOH . Z 5 HOH H 25 125 34 HOH HOH . Z 5 HOH H 26 126 134 HOH HOH . Z 5 HOH H 27 127 159 HOH HOH . Z 5 HOH H 28 128 45 HOH HOH . Z 5 HOH H 29 129 28 HOH HOH . Z 5 HOH H 30 130 77 HOH HOH . Z 5 HOH H 31 131 176 HOH HOH . Z 5 HOH H 32 132 125 HOH HOH . Z 5 HOH H 33 133 44 HOH HOH . Z 5 HOH H 34 134 219 HOH HOH . Z 5 HOH H 35 135 206 HOH HOH . Z 5 HOH H 36 136 137 HOH HOH . Z 5 HOH H 37 137 85 HOH HOH . Z 5 HOH H 38 138 29 HOH HOH . Z 5 HOH H 39 139 257 HOH HOH . Z 5 HOH H 40 140 189 HOH HOH . Z 5 HOH H 41 141 27 HOH HOH . Z 5 HOH H 42 142 76 HOH HOH . Z 5 HOH H 43 143 198 HOH HOH . Z 5 HOH H 44 144 266 HOH HOH . Z 5 HOH H 45 145 152 HOH HOH . Z 5 HOH H 46 146 277 HOH HOH . Z 5 HOH H 47 147 142 HOH HOH . Z 5 HOH H 48 148 205 HOH HOH . Z 5 HOH H 49 149 165 HOH HOH . Z 5 HOH H 50 150 234 HOH HOH . Z 5 HOH H 51 151 272 HOH HOH . Z 5 HOH H 52 152 204 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol F _atom_site.label_atom_id F _atom_site.label_comp_id F _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 4 _atom_site.Cartn_x -7.616 _atom_site.Cartn_y -40.683 _atom_site.Cartn_z 29.274 _atom_site.occupancy 0.9 _atom_site.B_iso_or_equiv 37.33 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id F _atom_site.auth_comp_id F _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #