data_5NKY # _model_server_result.job_id tT_zTUQDBnaeYVVyuA9tcg _model_server_result.datetime_utc '2024-11-16 22:23:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nky # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 5NKY # _exptl.entry_id 5NKY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 444.647 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(1~{S})-1-[(2~{R},5~{S})-5-(2-oxidanylpropan-2-yl)oxolan-2-yl]ethyl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5NKY _cell.length_a 66.191 _cell.length_b 66.191 _cell.length_c 261.698 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NKY _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -33.0955 57.323088 -43.616333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H44 O4' _chem_comp.formula_weight 444.647 _chem_comp.id 91W _chem_comp.mon_nstd_flag . _chem_comp.name (1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(1~{S})-1-[(2~{R},5~{S})-5-(2-oxidanylpropan-2-yl)oxolan-2-yl]ethyl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C9 91W sing 1 n n C11 C9 91W sing 2 n n C9 O1 91W sing 3 n n C9 C8 91W sing 4 n n C8 O 91W sing 5 n n C8 C12 91W sing 6 n n O C7 91W sing 7 n n C12 C13 91W sing 8 n n C7 C13 91W sing 9 n n C7 C6 91W sing 10 n n C C1 91W sing 11 n n C27 C26 91W doub 12 n n C6 C14 91W sing 13 n n C6 C5 91W sing 14 n n C17 C18 91W sing 15 n n C17 C16 91W sing 16 n n C18 C1 91W sing 17 n n O3 C25 91W sing 18 n n C24 C25 91W sing 19 n n C24 C23 91W sing 20 n n C1 C5 91W sing 21 n n C1 C2 91W sing 22 n n C26 C21 91W sing 23 n n C26 C25 91W sing 24 n n C22 C21 91W sing 25 n n C22 C23 91W sing 26 n n C21 C20 91W doub 27 z n C5 C4 91W sing 28 n n C23 O2 91W sing 29 n n C20 C19 91W sing 30 n n C16 C15 91W sing 31 n n C19 C15 91W doub 32 e n C15 C2 91W sing 33 n n C4 C3 91W sing 34 n n C2 C3 91W sing 35 n n O3 H1 91W sing 36 n n C25 H2 91W sing 37 n n C24 H3 91W sing 38 n n C24 H4 91W sing 39 n n C23 H5 91W sing 40 n n O2 H6 91W sing 41 n n C22 H7 91W sing 42 n n C22 H8 91W sing 43 n n C27 H9 91W sing 44 n n C27 H10 91W sing 45 n n C20 H11 91W sing 46 n n C19 H12 91W sing 47 n n C2 H13 91W sing 48 n n C16 H14 91W sing 49 n n C16 H15 91W sing 50 n n C17 H16 91W sing 51 n n C17 H17 91W sing 52 n n C18 H18 91W sing 53 n n C18 H19 91W sing 54 n n C H20 91W sing 55 n n C H21 91W sing 56 n n C H22 91W sing 57 n n C5 H23 91W sing 58 n n C4 H24 91W sing 59 n n C4 H25 91W sing 60 n n C3 H26 91W sing 61 n n C3 H27 91W sing 62 n n C6 H28 91W sing 63 n n C14 H29 91W sing 64 n n C14 H30 91W sing 65 n n C14 H31 91W sing 66 n n C7 H32 91W sing 67 n n C13 H33 91W sing 68 n n C13 H34 91W sing 69 n n C12 H35 91W sing 70 n n C12 H36 91W sing 71 n n C8 H37 91W sing 72 n n C11 H38 91W sing 73 n n C11 H39 91W sing 74 n n C11 H40 91W sing 75 n n O1 H41 91W sing 76 n n C10 H42 91W sing 77 n n C10 H43 91W sing 78 n n C10 H44 91W sing 79 n n # _atom_sites.entry_id 5NKY _atom_sites.fract_transf_matrix[1][1] 0.015108 _atom_sites.fract_transf_matrix[1][2] 0.008722 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 91W A 1 500 500 91W AM2 . D 4 HOH A 1 601 4 HOH HOH . D 4 HOH A 2 602 15 HOH HOH . D 4 HOH A 3 603 8 HOH HOH . D 4 HOH A 4 604 2 HOH HOH . D 4 HOH A 5 605 6 HOH HOH . D 4 HOH A 6 606 3 HOH HOH . D 4 HOH A 7 607 14 HOH HOH . D 4 HOH A 8 608 12 HOH HOH . D 4 HOH A 9 609 7 HOH HOH . D 4 HOH A 10 610 9 HOH HOH . D 4 HOH A 11 611 5 HOH HOH . D 4 HOH A 12 612 10 HOH HOH . D 4 HOH A 13 613 11 HOH HOH . D 4 HOH A 14 614 1 HOH HOH . D 4 HOH A 15 615 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 91W . . . C 3 -34.874 23.487 -5.784 1 38.43 ? O3 91W 500 A 1 HETATM 2 C C25 91W . . . C 3 -35.458 22.332 -5.263 1 40.79 ? C25 91W 500 A 1 HETATM 3 C C24 91W . . . C 3 -36.888 22.22 -5.743 1 33.25 ? C24 91W 500 A 1 HETATM 4 C C23 91W . . . C 3 -37.496 20.969 -5.153 1 41.88 ? C23 91W 500 A 1 HETATM 5 O O2 91W . . . C 3 -37.549 21.072 -3.742 1 40.36 ? O2 91W 500 A 1 HETATM 6 C C22 91W . . . C 3 -36.714 19.746 -5.585 1 36.06 ? C22 91W 500 A 1 HETATM 7 C C26 91W . . . C 3 -34.651 21.131 -5.678 1 40 ? C26 91W 500 A 1 HETATM 8 C C27 91W . . . C 3 -33.502 21.228 -6.292 1 42.08 ? C27 91W 500 A 1 HETATM 9 C C21 91W . . . C 3 -35.229 19.833 -5.394 1 35.12 ? C21 91W 500 A 1 HETATM 10 C C20 91W . . . C 3 -34.447 18.769 -5.131 1 36.14 ? C20 91W 500 A 1 HETATM 11 C C19 91W . . . C 3 -33.047 18.722 -4.888 1 38.5 ? C19 91W 500 A 1 HETATM 12 C C15 91W . . . C 3 -32.323 17.605 -4.725 1 38.17 ? C15 91W 500 A 1 HETATM 13 C C2 91W . . . C 3 -30.847 17.53 -4.428 1 40.74 ? C2 91W 500 A 1 HETATM 14 C C16 91W . . . C 3 -32.863 16.232 -4.955 1 42.88 ? C16 91W 500 A 1 HETATM 15 C C17 91W . . . C 3 -32.178 15.565 -6.127 1 43.07 ? C17 91W 500 A 1 HETATM 16 C C18 91W . . . C 3 -30.668 15.608 -5.995 1 38.7 ? C18 91W 500 A 1 HETATM 17 C C1 91W . . . C 3 -30.144 17.003 -5.701 1 43.06 ? C1 91W 500 A 1 HETATM 18 C C 91W . . . C 3 -30.429 17.942 -6.876 1 43.23 ? C 91W 500 A 1 HETATM 19 C C5 91W . . . C 3 -28.694 17.137 -5.229 1 45.57 ? C5 91W 500 A 1 HETATM 20 C C4 91W . . . C 3 -28.632 18.554 -4.666 1 44.43 ? C4 91W 500 A 1 HETATM 21 C C3 91W . . . C 3 -30.019 18.762 -4.03 1 45.09 ? C3 91W 500 A 1 HETATM 22 C C6 91W . . . C 3 -27.547 16.781 -6.194 1 46.89 ? C6 91W 500 A 1 HETATM 23 C C14 91W . . . C 3 -26.252 16.513 -5.442 1 45.21 ? C14 91W 500 A 1 HETATM 24 C C7 91W . . . C 3 -27.344 17.869 -7.247 1 42.88 ? C7 91W 500 A 1 HETATM 25 C C13 91W . . . C 3 -26.594 19.102 -6.804 1 48.03 ? C13 91W 500 A 1 HETATM 26 C C12 91W . . . C 3 -25.882 19.509 -8.091 1 48.73 ? C12 91W 500 A 1 HETATM 27 C C8 91W . . . C 3 -26.114 18.341 -9.042 1 48.04 ? C8 91W 500 A 1 HETATM 28 O O 91W . . . C 3 -26.442 17.256 -8.186 1 46.82 ? O 91W 500 A 1 HETATM 29 C C9 91W . . . C 3 -24.934 17.936 -9.92 1 49.97 ? C9 91W 500 A 1 HETATM 30 C C11 91W . . . C 3 -25.228 16.655 -10.662 1 48.37 ? C11 91W 500 A 1 HETATM 31 O O1 91W . . . C 3 -23.781 17.726 -9.11 1 48.29 ? O1 91W 500 A 1 HETATM 32 C C10 91W . . . C 3 -24.597 19.038 -10.895 1 49.08 ? C10 91W 500 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #